Wall clock time and date at job start Tue Mar 31 2020 23:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.52482 * 2 1 4 4 C 1.53040 * 109.49305 * 239.92188 * 2 1 3 5 5 C 1.53044 * 109.53419 * 178.68736 * 4 2 1 6 6 H 1.09011 * 109.49559 * 301.40719 * 5 4 2 7 7 C 1.53002 * 109.52465 * 181.33170 * 5 4 2 8 8 O 1.42899 * 109.47411 * 175.13958 * 7 5 4 9 9 C 1.53186 * 109.31623 * 61.36175 * 5 4 2 10 10 N 1.46925 * 108.77576 * 305.36552 * 9 5 4 11 11 S 1.65602 * 120.62867 * 233.58576 * 10 9 5 12 12 O 1.42090 * 106.40432 * 23.56249 * 11 10 9 13 13 O 1.42108 * 106.39840 * 156.48397 * 11 10 9 14 14 C 1.76205 * 107.21949 * 270.02058 * 11 10 9 15 15 C 1.38639 * 119.74915 * 269.73279 * 14 11 10 16 16 C 1.37615 * 120.24294 * 179.71761 * 15 14 11 17 17 C 1.40712 * 119.74958 * 0.57430 * 16 15 14 18 18 C 1.41394 * 120.24784 * 179.68242 * 17 16 15 19 19 H 1.07995 * 120.00006 * 204.40582 * 18 17 16 20 20 C 1.39952 * 120.00134 * 24.40096 * 18 17 16 21 21 N 1.30823 * 119.99296 * 17.85082 * 20 18 17 22 22 Si 1.86797 * 119.99912 * 197.84941 * 20 18 17 23 23 H 1.48496 * 109.46961 * 60.00106 * 22 20 18 24 24 H 1.48501 * 109.46584 * 180.02562 * 22 20 18 25 25 H 1.48492 * 109.47298 * 299.99603 * 22 20 18 26 26 C 1.40715 * 119.50997 * 359.69836 * 17 16 15 27 27 C 1.37620 * 119.74357 * 0.02562 * 26 17 16 28 28 C 1.46927 * 118.73745 * 53.60800 * 10 9 5 29 29 H 1.09004 * 109.46867 * 299.92173 * 1 2 3 30 30 H 1.09000 * 109.46737 * 59.91392 * 1 2 3 31 31 H 1.08997 * 109.47131 * 179.91576 * 1 2 3 32 32 H 1.09000 * 109.46416 * 298.70008 * 4 2 1 33 33 H 1.08992 * 109.46301 * 58.66884 * 4 2 1 34 34 H 1.08993 * 109.47256 * 295.14575 * 7 5 4 35 35 H 1.09005 * 109.46732 * 55.14284 * 7 5 4 36 36 H 0.96693 * 114.00140 * 180.02562 * 8 7 5 37 37 H 1.09005 * 109.58719 * 185.57609 * 9 5 4 38 38 H 1.08997 * 109.70326 * 65.22189 * 9 5 4 39 39 H 1.08003 * 119.87484 * 359.97438 * 15 14 11 40 40 H 1.08008 * 120.12440 * 180.27647 * 16 15 14 41 41 H 0.97003 * 119.99233 * 180.02562 * 21 20 18 42 42 H 1.07999 * 120.12937 * 179.97438 * 26 17 16 43 43 H 1.08009 * 119.87445 * 179.97438 * 27 26 17 44 44 H 1.09006 * 109.58494 * 186.60095 * 28 10 9 45 45 H 1.09003 * 109.58544 * 66.18080 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0407 -0.7230 -1.2484 5 6 3.5708 -0.6951 -1.2660 6 1 3.9159 0.3389 -1.2541 7 6 4.0804 -1.3889 -2.5309 8 8 5.5020 -1.2634 -2.6032 9 6 4.1052 -1.4267 -0.0309 10 7 3.5046 -0.8292 1.1695 11 16 4.4588 -0.2853 2.4089 12 8 5.7327 -0.0092 1.8432 13 8 3.6924 0.6852 3.1090 14 6 4.6893 -1.6333 3.5199 15 6 3.8000 -1.8219 4.5667 16 6 3.9671 -2.8747 5.4370 17 6 5.0523 -3.7544 5.2685 18 6 5.2379 -4.8356 6.1606 19 1 6.2213 -5.2604 6.2971 20 6 4.1470 -5.3553 6.8667 21 7 2.9277 -5.1008 6.4667 22 14 4.4321 -6.4122 8.3803 23 1 5.1778 -5.6288 9.3978 24 1 3.1242 -6.8357 8.9417 25 1 5.2208 -7.6129 8.0043 26 6 5.9519 -3.5499 4.2060 27 6 5.7620 -2.4937 3.3444 28 6 2.0413 -0.7238 1.2495 29 1 -0.3633 0.5126 0.8907 30 1 -0.3633 0.5152 -0.8892 31 1 -0.3633 -1.0276 -0.0015 32 1 1.6967 -1.7572 -1.2354 33 1 1.6582 -0.2244 -2.1389 34 1 3.8099 -2.4443 -2.5004 35 1 3.6295 -0.9234 -3.4074 36 1 5.8946 -1.6808 -3.3821 37 1 5.1896 -1.3247 0.0136 38 1 3.8395 -2.4824 -0.0855 39 1 2.9707 -1.1424 4.6970 40 1 3.2705 -3.0224 6.2491 41 1 2.1717 -5.4607 6.9563 42 1 6.7885 -4.2187 4.0676 43 1 6.4514 -2.3345 2.5283 44 1 1.7638 -0.1580 2.1389 45 1 1.6052 -1.7217 1.2980 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398653679.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:25 Heat of formation + Delta-G solvation = -149.425813 kcal Electronic energy + Delta-G solvation = -28081.632689 eV Core-core repulsion = 24188.703433 eV Total energy + Delta-G solvation = -3892.929255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.09501 -39.40402 -38.26662 -37.47133 -36.82485 -35.82239 -34.38980 -33.37776 -32.08544 -31.32150 -27.73250 -27.63332 -26.65412 -25.39219 -23.29515 -22.97579 -21.73795 -21.12911 -19.85355 -19.44523 -18.67514 -18.26331 -18.11404 -17.30621 -17.07791 -16.20840 -15.93515 -15.86961 -15.30779 -15.19861 -15.06896 -14.91922 -14.62678 -14.52373 -14.12034 -13.98765 -13.64065 -13.59890 -13.40822 -13.27197 -13.11403 -12.92389 -12.91137 -12.89413 -12.68563 -12.59943 -12.31409 -12.02035 -11.91157 -11.72991 -11.58645 -11.46388 -11.36763 -11.27520 -11.21175 -10.82162 -9.92308 -9.76011 -9.58291 -8.88618 -6.66573 -0.37924 0.46126 1.02753 1.35311 1.43951 1.49653 2.10437 2.14129 2.51007 2.90418 3.31669 3.43286 3.49775 3.78298 3.87954 3.94461 3.99514 4.26650 4.28445 4.29126 4.35321 4.46310 4.58381 4.66073 4.70032 4.74693 4.83063 4.87746 4.88348 4.89848 4.93080 5.04788 5.07114 5.17028 5.21676 5.27370 5.28019 5.43895 5.49452 5.52936 5.56535 5.68124 5.77927 5.91116 6.12788 6.46311 6.65999 6.78594 7.01521 8.06522 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015213 B = 0.003239 C = 0.003109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.035996 B = 8642.633904 C = 9005.287566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 H 0.065 0.935 4 C -0.098 4.098 5 C -0.101 4.101 6 H 0.064 0.936 7 C 0.084 3.916 8 O -0.598 6.598 9 C 0.123 3.877 10 N -0.998 5.998 11 S 2.713 3.287 12 O -1.000 7.000 13 O -1.001 7.001 14 C -0.798 4.798 15 C -0.021 4.021 16 C -0.206 4.206 17 C 0.111 3.889 18 C -0.466 4.466 19 H 0.092 0.908 20 C 0.036 3.964 21 N -0.794 5.794 22 Si 0.992 3.008 23 H -0.259 1.259 24 H -0.262 1.262 25 H -0.254 1.254 26 C -0.256 4.256 27 C -0.003 4.003 28 C 0.114 3.886 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.397 0.603 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.299 0.701 42 H 0.112 0.888 43 H 0.121 0.879 44 H 0.079 0.921 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.105 2.095 -14.883 16.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 H 0.083 0.917 4 C -0.135 4.135 5 C -0.121 4.121 6 H 0.082 0.918 7 C 0.006 3.994 8 O -0.406 6.406 9 C -0.001 4.001 10 N -0.835 5.835 11 S 2.812 3.188 12 O -0.991 6.991 13 O -0.991 6.991 14 C -0.891 4.891 15 C -0.041 4.041 16 C -0.226 4.226 17 C 0.108 3.892 18 C -0.493 4.493 19 H 0.110 0.890 20 C -0.184 4.184 21 N -0.417 5.417 22 Si 0.811 3.189 23 H -0.184 1.184 24 H -0.186 1.186 25 H -0.178 1.178 26 C -0.276 4.276 27 C -0.023 4.023 28 C -0.011 4.011 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.247 0.753 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.111 0.889 42 H 0.130 0.870 43 H 0.139 0.861 44 H 0.098 0.902 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.129 3.227 -14.223 15.820 hybrid contribution 0.276 -1.356 0.673 1.539 sum -5.853 1.871 -13.549 14.878 Atomic orbital electron populations 1.21749 0.92476 1.02892 1.02726 1.21459 0.97227 0.99337 0.94169 0.91665 1.21514 0.92053 1.02020 0.97930 1.21527 0.97055 1.00003 0.93550 0.91789 1.22219 0.80843 0.99856 0.96477 1.86511 1.21384 1.81656 1.51069 1.21527 0.97938 0.97358 0.83319 1.57629 1.16590 1.78318 1.31003 1.00618 0.72003 0.73804 0.72409 1.93443 1.42078 1.84896 1.78649 1.93431 1.72147 1.59280 1.74253 1.29697 1.11077 1.27415 1.20944 1.20431 0.95514 0.95321 0.92810 1.21351 1.02357 0.96524 1.02347 1.18189 0.90492 0.90953 0.89571 1.20224 0.96757 1.12887 1.19393 0.88980 1.27010 0.93640 0.97166 1.00600 1.69841 1.00666 1.34798 1.36347 0.85088 0.79315 0.78228 0.76268 1.18358 1.18627 1.17779 1.21273 1.04589 1.02389 0.99393 1.20420 0.93440 0.91746 0.96692 1.21732 0.77743 1.01729 0.99912 0.92627 0.90661 0.91567 0.90223 0.89131 0.91958 0.91051 0.75336 0.90520 0.90595 0.86844 0.86921 0.88943 0.86982 0.86145 0.90218 0.90408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.20 71.98 0.66 -1.54 16 2 C -0.10 -2.11 2.87 -10.72 -0.03 -2.14 16 3 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 4 C -0.10 -1.65 4.45 30.62 0.14 -1.52 16 5 C -0.10 -2.23 2.58 -10.72 -0.03 -2.26 16 6 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 7 C 0.08 1.40 6.43 71.98 0.46 1.86 16 8 O -0.60 -12.20 13.30 -148.98 -1.98 -14.18 16 9 C 0.12 3.55 5.59 86.36 0.48 4.04 16 10 N -1.00 -32.65 3.29 -513.08 -1.69 -34.34 16 11 S 2.71 112.23 5.72 -56.49 -0.32 111.91 16 12 O -1.00 -45.12 15.85 -128.00 -2.03 -47.15 16 13 O -1.00 -44.62 15.84 -128.00 -2.03 -46.65 16 14 C -0.80 -37.16 6.00 22.46 0.13 -37.02 16 15 C -0.02 -1.01 9.49 22.22 0.21 -0.80 16 16 C -0.21 -10.81 8.70 22.73 0.20 -10.61 16 17 C 0.11 5.91 5.57 -21.29 -0.12 5.79 16 18 C -0.47 -23.57 9.05 23.46 0.21 -23.36 16 19 H 0.09 4.39 7.91 -2.91 -0.02 4.36 16 20 C 0.04 1.65 5.14 85.26 0.44 2.09 16 21 N -0.79 -38.19 10.95 21.83 0.24 -37.95 16 22 Si 0.99 34.57 29.60 68.60 2.03 36.60 16 23 H -0.26 -8.99 7.11 99.48 0.71 -8.29 16 24 H -0.26 -8.55 7.11 99.48 0.71 -7.84 16 25 H -0.25 -8.50 7.11 99.48 0.71 -7.79 16 26 C -0.26 -12.68 9.80 22.73 0.22 -12.46 16 27 C 0.00 -0.15 9.49 22.22 0.21 0.06 16 28 C 0.11 3.13 5.76 86.36 0.50 3.62 16 29 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.40 4.05 9.12 -74.06 -0.68 3.37 16 37 H 0.08 2.55 6.76 -2.38 -0.02 2.53 16 38 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.11 5.12 7.59 -2.91 -0.02 5.10 16 40 H 0.11 6.00 6.16 -2.91 -0.02 5.98 16 41 H 0.30 12.77 8.30 -92.71 -0.77 12.00 16 42 H 0.11 5.08 8.06 -2.91 -0.02 5.06 16 43 H 0.12 5.12 7.60 -2.91 -0.02 5.10 16 44 H 0.08 2.38 6.92 -2.38 -0.02 2.37 16 45 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -68.64 373.96 -1.77 -70.41 By element: Atomic # 1 Polarization: 35.26 SS G_CDS: 0.32 Total: 35.58 kcal Atomic # 6 Polarization: -77.93 SS G_CDS: 3.69 Total: -74.24 kcal Atomic # 7 Polarization: -70.84 SS G_CDS: -1.45 Total: -72.29 kcal Atomic # 8 Polarization: -101.94 SS G_CDS: -6.04 Total: -107.98 kcal Atomic # 14 Polarization: 34.57 SS G_CDS: 2.03 Total: 36.60 kcal Atomic # 16 Polarization: 112.23 SS G_CDS: -0.32 Total: 111.91 kcal Total: -68.64 -1.77 -70.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398653679.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.015 kcal (2) G-P(sol) polarization free energy of solvation -68.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds