Wall clock time and date at job start Tue Mar 31 2020 23:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.50188 * 2 1 4 4 C 1.53035 * 109.50028 * 239.93257 * 2 1 3 5 5 C 1.53041 * 109.53790 * 301.38354 * 4 2 1 6 6 H 1.09005 * 109.49858 * 58.58726 * 5 4 2 7 7 C 1.53002 * 109.49711 * 178.67872 * 5 4 2 8 8 O 1.42901 * 109.46818 * 184.83675 * 7 5 4 9 9 C 1.53185 * 109.31344 * 298.63145 * 5 4 2 10 10 N 1.46931 * 108.77472 * 54.63504 * 9 5 4 11 11 S 1.65602 * 120.62903 * 126.11947 * 10 9 5 12 12 O 1.42099 * 106.39820 * 203.54067 * 11 10 9 13 13 O 1.42097 * 106.40433 * 336.45583 * 11 10 9 14 14 C 1.76198 * 107.21917 * 90.00162 * 11 10 9 15 15 C 1.38638 * 119.74512 * 269.72113 * 14 11 10 16 16 C 1.37621 * 120.24235 * 179.76198 * 15 14 11 17 17 C 1.40717 * 119.74938 * 0.48973 * 16 15 14 18 18 C 1.41388 * 120.24329 * 179.78546 * 17 16 15 19 19 H 1.08007 * 120.00108 * 204.36954 * 18 17 16 20 20 C 1.39944 * 120.00301 * 24.37417 * 18 17 16 21 21 N 1.30820 * 119.99866 * 17.87402 * 20 18 17 22 22 Si 1.86806 * 120.00150 * 197.87763 * 20 18 17 23 23 H 1.48496 * 109.46873 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.46964 * 119.99937 * 22 20 18 25 25 H 1.48501 * 109.47127 * 239.99757 * 22 20 18 26 26 C 1.40714 * 119.51000 * 359.76756 * 17 16 15 27 27 C 1.37624 * 119.74294 * 359.97438 * 26 17 16 28 28 C 1.46930 * 118.73605 * 306.39178 * 10 9 5 29 29 H 1.08999 * 109.47452 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46911 * 300.06370 * 1 2 3 31 31 H 1.08996 * 109.47025 * 60.06383 * 1 2 3 32 32 H 1.08993 * 109.46773 * 181.36060 * 4 2 1 33 33 H 1.09006 * 109.44648 * 61.39207 * 4 2 1 34 34 H 1.09003 * 109.47169 * 304.83745 * 7 5 4 35 35 H 1.08994 * 109.47199 * 64.84160 * 7 5 4 36 36 H 0.96708 * 113.99655 * 180.02562 * 8 7 5 37 37 H 1.08999 * 109.58989 * 294.84864 * 9 5 4 38 38 H 1.09000 * 109.58690 * 174.42207 * 9 5 4 39 39 H 1.07993 * 119.87925 * 0.02562 * 15 14 11 40 40 H 1.08006 * 120.12448 * 180.27644 * 16 15 14 41 41 H 0.97005 * 119.99629 * 180.02562 * 21 20 18 42 42 H 1.07994 * 120.12828 * 180.02562 * 26 17 16 43 43 H 1.07998 * 119.87361 * 180.02562 * 27 26 17 44 44 H 1.09002 * 109.58017 * 173.39731 * 28 10 9 45 45 H 1.08999 * 109.58738 * 293.81757 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0408 -0.7228 -1.2485 5 6 1.5037 -2.1557 -1.2661 6 1 0.4139 -2.1359 -1.2539 7 6 1.9880 -2.8671 -2.5311 8 8 1.3958 -4.1656 -2.6037 9 6 2.0153 -2.9038 -0.0311 10 7 1.6528 -2.1381 1.1694 11 16 0.8155 -2.8542 2.4058 12 8 0.1588 -1.8061 3.1054 13 8 0.1271 -3.9595 1.8371 14 6 2.0037 -3.5273 3.5192 15 6 2.4481 -4.8292 3.3464 16 6 3.3796 -5.3636 4.2071 17 6 3.8733 -4.5869 5.2716 18 6 4.8271 -5.1270 6.1647 19 1 4.9174 -4.7282 7.1643 20 6 5.6541 -6.1784 5.7535 21 7 5.8043 -6.4324 4.4790 22 14 6.5435 -7.2192 7.0244 23 1 6.2091 -6.7304 8.3862 24 1 6.1196 -8.6358 6.8885 25 1 8.0093 -7.1183 6.8088 26 6 3.4110 -3.2686 5.4403 27 6 2.4832 -2.7530 4.5644 28 6 2.0420 -0.7236 1.2494 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5148 0.8894 31 1 -0.3633 0.5128 -0.8905 32 1 3.1305 -0.7436 -1.2358 33 1 1.6980 -0.1955 -2.1388 34 1 1.6995 -2.2866 -3.4075 35 1 3.0732 -2.9640 -2.5006 36 1 1.6591 -4.6750 -3.3824 37 1 3.0992 -3.0036 -0.0873 38 1 1.5571 -3.8918 0.0135 39 1 2.0651 -5.4246 2.5310 40 1 3.7277 -6.3765 4.0680 41 1 6.3773 -7.1614 4.1940 42 1 3.7835 -2.6635 6.2536 43 1 2.1273 -1.7414 4.6917 44 1 1.6014 -0.2732 2.1389 45 1 3.1281 -0.6456 1.2976 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398653683.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:31 Heat of formation + Delta-G solvation = -123.919187 kcal Electronic energy + Delta-G solvation = -28342.555833 eV Core-core repulsion = 24450.732628 eV Total energy + Delta-G solvation = -3891.823205 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.28971 -37.54662 -36.71898 -36.43924 -35.07185 -34.02258 -32.98944 -32.22542 -30.23000 -29.44498 -26.96605 -25.84520 -25.79289 -24.29174 -21.63368 -21.37708 -21.09858 -19.36408 -18.19935 -17.61247 -17.32659 -17.17852 -16.52557 -15.81238 -15.50532 -14.94839 -14.88477 -14.25156 -14.11305 -14.06561 -13.70467 -13.48067 -13.25666 -13.20069 -13.11806 -12.42417 -12.28754 -12.16840 -11.83836 -11.75350 -11.58972 -11.42383 -11.35996 -11.26582 -11.18933 -11.15792 -11.07276 -10.89238 -10.84795 -10.45205 -10.37587 -10.16851 -10.04693 -9.73329 -9.55724 -9.48934 -8.56501 -7.92879 -7.68013 -7.13137 -4.78248 1.25577 2.27489 2.88269 2.90971 2.94736 2.96150 3.65567 3.67608 4.08930 4.26246 4.56697 4.69419 4.73712 4.86084 4.93756 5.16070 5.17923 5.33794 5.38851 5.44571 5.46172 5.50950 5.61010 5.62917 5.76936 5.88660 5.97922 6.00690 6.07474 6.08243 6.13190 6.14954 6.22940 6.44316 6.48556 6.69476 6.70919 6.86829 7.05093 7.08506 7.36208 7.44569 7.56122 7.66056 7.79076 7.98634 8.33978 8.53157 8.67193 9.78395 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015954 B = 0.003396 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.587272 B = 8243.691924 C = 9022.766418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.101 4.101 3 H 0.081 0.919 4 C -0.104 4.104 5 C -0.104 4.104 6 H 0.086 0.914 7 C 0.082 3.918 8 O -0.568 6.568 9 C 0.131 3.869 10 N -1.002 6.002 11 S 2.690 3.310 12 O -0.983 6.983 13 O -0.980 6.980 14 C -0.787 4.787 15 C -0.015 4.015 16 C -0.183 4.183 17 C 0.139 3.861 18 C -0.436 4.436 19 H 0.088 0.912 20 C 0.073 3.927 21 N -0.766 5.766 22 Si 0.916 3.084 23 H -0.256 1.256 24 H -0.267 1.267 25 H -0.270 1.270 26 C -0.239 4.239 27 C 0.001 3.999 28 C 0.123 3.877 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.047 0.953 36 H 0.377 0.623 37 H 0.064 0.936 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.122 0.878 41 H 0.288 0.712 42 H 0.100 0.900 43 H 0.103 0.897 44 H 0.092 0.908 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.511 7.465 -12.090 14.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.121 4.121 3 H 0.099 0.901 4 C -0.142 4.142 5 C -0.124 4.124 6 H 0.104 0.896 7 C 0.004 3.996 8 O -0.373 6.373 9 C 0.006 3.994 10 N -0.837 5.837 11 S 2.790 3.210 12 O -0.974 6.974 13 O -0.970 6.970 14 C -0.882 4.882 15 C -0.036 4.036 16 C -0.203 4.203 17 C 0.136 3.864 18 C -0.464 4.464 19 H 0.106 0.894 20 C -0.149 4.149 21 N -0.389 5.389 22 Si 0.739 3.261 23 H -0.180 1.180 24 H -0.192 1.192 25 H -0.196 1.196 26 C -0.259 4.259 27 C -0.019 4.019 28 C -0.003 4.003 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.223 0.777 37 H 0.082 0.918 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.140 0.860 41 H 0.099 0.901 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.110 0.890 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.591 7.507 -11.652 14.102 hybrid contribution 1.588 -0.808 0.120 1.786 sum -1.003 6.699 -11.532 13.374 Atomic orbital electron populations 1.21896 0.94992 1.02311 1.01663 1.21410 0.96536 0.99075 0.95042 0.90101 1.21478 1.00644 0.94313 0.97758 1.21549 1.02272 0.94688 0.93857 0.89600 1.22185 0.96408 0.83973 0.97049 1.86568 1.72737 1.28602 1.49428 1.21316 1.00030 0.95249 0.82822 1.57887 1.75398 1.18461 1.31914 1.01386 0.74341 0.72655 0.72581 1.93457 1.73195 1.57417 1.73329 1.93481 1.71839 1.53401 1.78318 1.29273 1.32235 1.06895 1.19843 1.20263 0.93925 0.92326 0.97052 1.21335 0.99511 1.00591 0.98874 1.17851 0.88406 0.89905 0.90274 1.19966 1.13735 1.12694 0.99971 0.89422 1.26130 0.96139 0.96556 0.96114 1.69829 1.28150 1.24738 1.16162 0.86117 0.78959 0.79668 0.81327 1.17977 1.19219 1.19554 1.21045 1.05180 0.96368 1.03355 1.20154 0.92860 0.96569 0.92351 1.21415 0.99910 0.80308 0.98620 0.92430 0.92095 0.92864 0.91512 0.91841 0.93699 0.93453 0.77657 0.91777 0.88359 0.87942 0.85978 0.90076 0.88213 0.87892 0.88954 0.91527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 8.70 37.16 0.32 -1.47 16 2 C -0.10 -1.10 3.21 -90.51 -0.29 -1.39 16 3 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.10 -1.03 4.71 -26.69 -0.13 -1.16 16 5 C -0.10 -1.25 2.24 -90.50 -0.20 -1.45 16 6 H 0.09 1.15 6.34 -51.93 -0.33 0.82 16 7 C 0.08 0.82 6.43 37.16 0.24 1.06 16 8 O -0.57 -6.49 13.30 -35.23 -0.47 -6.96 16 9 C 0.13 1.97 5.59 -3.71 -0.02 1.95 16 10 N -1.00 -16.31 2.73 -113.52 -0.31 -16.62 16 11 S 2.69 54.68 5.73 -107.50 -0.62 54.07 16 12 O -0.98 -21.09 15.84 -57.17 -0.91 -22.00 16 13 O -0.98 -22.08 15.84 -57.17 -0.91 -22.99 16 14 C -0.79 -17.95 6.00 -39.29 -0.24 -18.18 16 15 C -0.02 -0.37 9.49 -39.66 -0.38 -0.75 16 16 C -0.18 -4.67 8.70 -38.87 -0.34 -5.00 16 17 C 0.14 3.58 5.58 -106.83 -0.60 2.99 16 18 C -0.44 -10.81 9.05 -37.75 -0.34 -11.16 16 19 H 0.09 2.06 7.91 -52.48 -0.42 1.64 16 20 C 0.07 1.68 5.14 -17.34 -0.09 1.59 16 21 N -0.77 -18.30 10.95 55.55 0.61 -17.69 16 22 Si 0.92 17.12 29.60 -169.99 -5.03 12.09 16 23 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 24 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 25 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 26 C -0.24 -5.73 9.80 -38.87 -0.38 -6.11 16 27 C 0.00 0.02 9.49 -39.66 -0.38 -0.36 16 28 C 0.12 1.68 5.87 -3.71 -0.02 1.65 16 29 H 0.06 0.79 5.97 -51.93 -0.31 0.48 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.38 2.44 9.12 45.56 0.42 2.86 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.10 1.67 6.76 -51.93 -0.35 1.32 16 39 H 0.10 2.30 7.59 -52.49 -0.40 1.91 16 40 H 0.12 3.14 6.16 -52.48 -0.32 2.82 16 41 H 0.29 6.14 8.30 -40.82 -0.34 5.80 16 42 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 43 H 0.10 2.10 7.60 -52.49 -0.40 1.70 16 44 H 0.09 1.31 6.91 -51.93 -0.36 0.95 16 45 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 369.29 15.07 5.57 5.57 Total: -1.00 -31.15 369.29 -10.73 -41.87 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -5.83 Total: 10.46 kcal Atomic # 6 Polarization: -34.96 SS G_CDS: -2.83 Total: -37.79 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.30 Total: -34.32 kcal Atomic # 8 Polarization: -49.67 SS G_CDS: -2.28 Total: -51.95 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.03 Total: 12.09 kcal Atomic # 16 Polarization: 54.68 SS G_CDS: -0.62 Total: 54.07 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.15 -10.73 -41.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398653683.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.046 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds