Wall clock time and date at job start Tue Mar 31 2020 23:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.50188 * 2 1 4 4 C 1.53035 * 109.50028 * 239.93257 * 2 1 3 5 5 C 1.53041 * 109.53790 * 301.38354 * 4 2 1 6 6 H 1.09005 * 109.49858 * 58.58726 * 5 4 2 7 7 C 1.53002 * 109.49711 * 178.67872 * 5 4 2 8 8 O 1.42901 * 109.46818 * 184.83675 * 7 5 4 9 9 C 1.53185 * 109.31344 * 298.63145 * 5 4 2 10 10 N 1.46931 * 108.77472 * 54.63504 * 9 5 4 11 11 S 1.65602 * 120.62903 * 126.11947 * 10 9 5 12 12 O 1.42099 * 106.39820 * 203.54067 * 11 10 9 13 13 O 1.42097 * 106.40433 * 336.45583 * 11 10 9 14 14 C 1.76198 * 107.21917 * 90.00162 * 11 10 9 15 15 C 1.38638 * 119.74512 * 269.72113 * 14 11 10 16 16 C 1.37621 * 120.24235 * 179.76198 * 15 14 11 17 17 C 1.40717 * 119.74938 * 0.48973 * 16 15 14 18 18 C 1.41388 * 120.24329 * 179.78546 * 17 16 15 19 19 H 1.08007 * 120.00108 * 204.36954 * 18 17 16 20 20 C 1.39944 * 120.00301 * 24.37417 * 18 17 16 21 21 N 1.30820 * 119.99866 * 17.87402 * 20 18 17 22 22 Si 1.86806 * 120.00150 * 197.87763 * 20 18 17 23 23 H 1.48496 * 109.46873 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.46964 * 119.99937 * 22 20 18 25 25 H 1.48501 * 109.47127 * 239.99757 * 22 20 18 26 26 C 1.40714 * 119.51000 * 359.76756 * 17 16 15 27 27 C 1.37624 * 119.74294 * 359.97438 * 26 17 16 28 28 C 1.46930 * 118.73605 * 306.39178 * 10 9 5 29 29 H 1.08999 * 109.47452 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46911 * 300.06370 * 1 2 3 31 31 H 1.08996 * 109.47025 * 60.06383 * 1 2 3 32 32 H 1.08993 * 109.46773 * 181.36060 * 4 2 1 33 33 H 1.09006 * 109.44648 * 61.39207 * 4 2 1 34 34 H 1.09003 * 109.47169 * 304.83745 * 7 5 4 35 35 H 1.08994 * 109.47199 * 64.84160 * 7 5 4 36 36 H 0.96708 * 113.99655 * 180.02562 * 8 7 5 37 37 H 1.08999 * 109.58989 * 294.84864 * 9 5 4 38 38 H 1.09000 * 109.58690 * 174.42207 * 9 5 4 39 39 H 1.07993 * 119.87925 * 0.02562 * 15 14 11 40 40 H 1.08006 * 120.12448 * 180.27644 * 16 15 14 41 41 H 0.97005 * 119.99629 * 180.02562 * 21 20 18 42 42 H 1.07994 * 120.12828 * 180.02562 * 26 17 16 43 43 H 1.07998 * 119.87361 * 180.02562 * 27 26 17 44 44 H 1.09002 * 109.58017 * 173.39731 * 28 10 9 45 45 H 1.08999 * 109.58738 * 293.81757 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0408 -0.7228 -1.2485 5 6 1.5037 -2.1557 -1.2661 6 1 0.4139 -2.1359 -1.2539 7 6 1.9880 -2.8671 -2.5311 8 8 1.3958 -4.1656 -2.6037 9 6 2.0153 -2.9038 -0.0311 10 7 1.6528 -2.1381 1.1694 11 16 0.8155 -2.8542 2.4058 12 8 0.1588 -1.8061 3.1054 13 8 0.1271 -3.9595 1.8371 14 6 2.0037 -3.5273 3.5192 15 6 2.4481 -4.8292 3.3464 16 6 3.3796 -5.3636 4.2071 17 6 3.8733 -4.5869 5.2716 18 6 4.8271 -5.1270 6.1647 19 1 4.9174 -4.7282 7.1643 20 6 5.6541 -6.1784 5.7535 21 7 5.8043 -6.4324 4.4790 22 14 6.5435 -7.2192 7.0244 23 1 6.2091 -6.7304 8.3862 24 1 6.1196 -8.6358 6.8885 25 1 8.0093 -7.1183 6.8088 26 6 3.4110 -3.2686 5.4403 27 6 2.4832 -2.7530 4.5644 28 6 2.0420 -0.7236 1.2494 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5148 0.8894 31 1 -0.3633 0.5128 -0.8905 32 1 3.1305 -0.7436 -1.2358 33 1 1.6980 -0.1955 -2.1388 34 1 1.6995 -2.2866 -3.4075 35 1 3.0732 -2.9640 -2.5006 36 1 1.6591 -4.6750 -3.3824 37 1 3.0992 -3.0036 -0.0873 38 1 1.5571 -3.8918 0.0135 39 1 2.0651 -5.4246 2.5310 40 1 3.7277 -6.3765 4.0680 41 1 6.3773 -7.1614 4.1940 42 1 3.7835 -2.6635 6.2536 43 1 2.1273 -1.7414 4.6917 44 1 1.6014 -0.2732 2.1389 45 1 3.1281 -0.6456 1.2976 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398653683.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:30 Heat of formation + Delta-G solvation = -145.316683 kcal Electronic energy + Delta-G solvation = -28343.483698 eV Core-core repulsion = 24450.732628 eV Total energy + Delta-G solvation = -3892.751070 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.27654 -39.40518 -38.25255 -37.47740 -36.80690 -35.82527 -34.11259 -33.18144 -32.08641 -31.32404 -27.94734 -27.63354 -26.68727 -25.44455 -23.31415 -22.98059 -22.45102 -20.52870 -19.55305 -19.45047 -18.68295 -18.27741 -18.04494 -17.24647 -17.02143 -16.20481 -15.95536 -15.78246 -15.47886 -15.14804 -15.04394 -14.94469 -14.75686 -14.30472 -14.14894 -14.11964 -13.98056 -13.61338 -13.29960 -13.23049 -13.09941 -12.97053 -12.93453 -12.89096 -12.61946 -12.45892 -12.21655 -12.03975 -11.98754 -11.76320 -11.58887 -11.37216 -11.36386 -11.25192 -11.10961 -10.82568 -9.89086 -9.74199 -9.58456 -8.89057 -6.66681 -0.36248 0.45586 1.02531 1.35123 1.41232 1.52516 2.10552 2.15728 2.50940 2.91684 3.34918 3.45794 3.49761 3.79756 3.89835 3.90619 4.07017 4.26076 4.27991 4.28912 4.39430 4.46480 4.59171 4.67714 4.72342 4.75272 4.82719 4.84560 4.91244 4.92066 5.00679 5.05837 5.06994 5.09542 5.21494 5.27904 5.30858 5.41357 5.49567 5.53164 5.56416 5.70688 5.80394 5.91451 6.12421 6.46519 6.65924 6.78496 7.00414 8.06438 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015954 B = 0.003396 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.587272 B = 8243.691924 C = 9022.766418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.096 4.096 3 H 0.112 0.888 4 C -0.099 4.099 5 C -0.103 4.103 6 H 0.068 0.932 7 C 0.082 3.918 8 O -0.599 6.599 9 C 0.126 3.874 10 N -0.994 5.994 11 S 2.712 3.288 12 O -0.995 6.995 13 O -1.006 7.006 14 C -0.799 4.799 15 C -0.023 4.023 16 C -0.206 4.206 17 C 0.111 3.889 18 C -0.465 4.465 19 H 0.093 0.907 20 C 0.035 3.965 21 N -0.795 5.795 22 Si 0.992 3.008 23 H -0.254 1.254 24 H -0.262 1.262 25 H -0.259 1.259 26 C -0.255 4.255 27 C -0.002 4.002 28 C 0.110 3.890 29 H 0.031 0.969 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.396 0.604 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.299 0.701 42 H 0.114 0.886 43 H 0.126 0.874 44 H 0.084 0.916 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.383 8.914 -13.347 16.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.116 4.116 3 H 0.130 0.870 4 C -0.136 4.136 5 C -0.123 4.123 6 H 0.086 0.914 7 C 0.004 3.996 8 O -0.407 6.407 9 C 0.001 3.999 10 N -0.832 5.832 11 S 2.810 3.190 12 O -0.985 6.985 13 O -0.996 6.996 14 C -0.892 4.892 15 C -0.043 4.043 16 C -0.226 4.226 17 C 0.108 3.892 18 C -0.491 4.491 19 H 0.111 0.889 20 C -0.185 4.185 21 N -0.418 5.418 22 Si 0.811 3.189 23 H -0.177 1.177 24 H -0.187 1.187 25 H -0.184 1.184 26 C -0.276 4.276 27 C -0.022 4.022 28 C -0.014 4.014 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.246 0.754 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.126 0.874 40 H 0.129 0.871 41 H 0.110 0.890 42 H 0.132 0.868 43 H 0.144 0.856 44 H 0.102 0.898 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.450 8.949 -12.904 15.770 hybrid contribution 1.185 -1.208 0.402 1.739 sum -0.265 7.741 -12.502 14.707 Atomic orbital electron populations 1.21930 0.95908 1.00863 1.02462 1.21458 0.95720 1.00431 0.93998 0.86954 1.21488 1.01392 0.92542 0.98177 1.21572 1.01286 0.96232 0.93221 0.91351 1.22258 0.96992 0.83591 0.96739 1.86522 1.73426 1.29689 1.51073 1.21470 1.00440 0.94470 0.83561 1.57558 1.75198 1.19658 1.30821 1.00649 0.73804 0.71999 0.72507 1.93431 1.73535 1.57347 1.74201 1.93441 1.72630 1.54927 1.78635 1.29736 1.31959 1.06642 1.20905 1.20409 0.93766 0.93143 0.96963 1.21342 1.00814 1.00440 1.00026 1.18198 0.89364 0.90829 0.90852 1.20266 1.14403 1.14252 1.00201 0.88913 1.27026 0.96404 0.96987 0.98068 1.69855 1.28630 1.25358 1.17966 0.84999 0.77943 0.77604 0.78344 1.17695 1.18693 1.18370 1.21289 1.05889 0.96158 1.04233 1.20443 0.92339 0.97564 0.91805 1.21775 1.00982 0.78535 1.00114 0.94982 0.92963 0.90471 0.90122 0.89129 0.91029 0.92156 0.75437 0.90810 0.91176 0.87431 0.87107 0.88998 0.86776 0.85604 0.89766 0.89992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 8.70 71.98 0.63 -2.73 16 2 C -0.10 -1.81 3.21 -10.72 -0.03 -1.85 16 3 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 4 C -0.10 -1.59 4.71 30.62 0.14 -1.44 16 5 C -0.10 -2.30 2.24 -10.72 -0.02 -2.32 16 6 H 0.07 1.78 6.34 -2.38 -0.02 1.76 16 7 C 0.08 1.44 6.43 71.98 0.46 1.90 16 8 O -0.60 -13.07 13.30 -148.98 -1.98 -15.05 16 9 C 0.13 3.72 5.59 86.36 0.48 4.20 16 10 N -0.99 -32.04 2.73 -513.06 -1.40 -33.44 16 11 S 2.71 112.04 5.73 -56.49 -0.32 111.71 16 12 O -0.99 -42.81 15.84 -128.00 -2.03 -44.84 16 13 O -1.01 -46.76 15.84 -128.00 -2.03 -48.79 16 14 C -0.80 -37.30 6.00 22.46 0.13 -37.16 16 15 C -0.02 -1.14 9.49 22.22 0.21 -0.93 16 16 C -0.21 -10.98 8.70 22.73 0.20 -10.78 16 17 C 0.11 5.90 5.58 -21.29 -0.12 5.78 16 18 C -0.46 -23.52 9.05 23.46 0.21 -23.31 16 19 H 0.09 4.43 7.91 -2.91 -0.02 4.41 16 20 C 0.03 1.62 5.14 85.26 0.44 2.05 16 21 N -0.80 -38.63 10.95 21.83 0.24 -38.39 16 22 Si 0.99 34.74 29.60 68.60 2.03 36.77 16 23 H -0.25 -8.70 7.11 99.48 0.71 -7.99 16 24 H -0.26 -8.92 7.11 99.48 0.71 -8.22 16 25 H -0.26 -8.58 7.11 99.48 0.71 -7.87 16 26 C -0.26 -12.50 9.80 22.73 0.22 -12.27 16 27 C 0.00 -0.08 9.49 22.22 0.21 0.13 16 28 C 0.11 2.82 5.87 86.36 0.51 3.32 16 29 H 0.03 0.85 5.97 -2.39 -0.01 0.84 16 30 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.40 4.63 9.12 -74.05 -0.68 3.96 16 37 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.07 2.47 6.76 -2.39 -0.02 2.45 16 39 H 0.11 5.09 7.59 -2.91 -0.02 5.07 16 40 H 0.11 6.01 6.16 -2.91 -0.02 5.99 16 41 H 0.30 12.81 8.30 -92.70 -0.77 12.04 16 42 H 0.11 5.08 8.06 -2.91 -0.02 5.05 16 43 H 0.13 5.09 7.60 -2.91 -0.02 5.07 16 44 H 0.08 2.29 6.91 -2.39 -0.02 2.27 16 45 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -69.47 369.29 -1.49 -70.96 By element: Atomic # 1 Polarization: 36.13 SS G_CDS: 0.33 Total: 36.46 kcal Atomic # 6 Polarization: -79.08 SS G_CDS: 3.67 Total: -75.40 kcal Atomic # 7 Polarization: -70.66 SS G_CDS: -1.16 Total: -71.82 kcal Atomic # 8 Polarization: -102.64 SS G_CDS: -6.04 Total: -108.68 kcal Atomic # 14 Polarization: 34.74 SS G_CDS: 2.03 Total: 36.77 kcal Atomic # 16 Polarization: 112.04 SS G_CDS: -0.32 Total: 111.71 kcal Total: -69.47 -1.49 -70.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398653683.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.359 kcal (2) G-P(sol) polarization free energy of solvation -69.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds