Wall clock time and date at job start Tue Mar 31 2020 22:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47123 * 2 1 4 4 H 1.09002 * 109.51446 * 305.10367 * 3 2 1 5 5 C 1.53295 * 109.51668 * 184.99588 * 3 2 1 6 6 N 1.47147 * 108.38892 * 187.72204 * 5 3 2 7 7 S 1.65591 * 120.98606 * 230.51658 * 6 5 3 8 8 O 1.42100 * 106.40767 * 147.99901 * 7 6 5 9 9 O 1.42099 * 106.40239 * 15.07772 * 7 6 5 10 10 C 1.76202 * 107.21644 * 261.54154 * 7 6 5 11 11 C 1.38636 * 119.74700 * 263.47209 * 10 7 6 12 12 C 1.37618 * 120.24885 * 180.30472 * 11 10 7 13 13 C 1.40719 * 119.74269 * 359.42382 * 12 11 10 14 14 C 1.41390 * 120.24488 * 180.30135 * 13 12 11 15 15 H 1.08005 * 120.00482 * 212.72032 * 14 13 12 16 16 C 1.39950 * 120.00171 * 32.72217 * 14 13 12 17 17 N 1.30814 * 119.99977 * 15.16191 * 16 14 13 18 18 Si 1.86803 * 119.99813 * 195.16775 * 16 14 13 19 19 H 1.48494 * 109.47483 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47167 * 120.00051 * 18 16 14 21 21 H 1.48500 * 109.46547 * 239.99425 * 18 16 14 22 22 C 1.40715 * 119.51148 * 0.27650 * 13 12 11 23 23 C 1.37620 * 119.74498 * 0.02562 * 22 13 12 24 24 C 1.47154 * 118.03073 * 50.78699 * 6 5 3 25 25 H 1.08997 * 109.68654 * 68.94170 * 24 6 5 26 26 C 1.53001 * 109.67965 * 189.49324 * 24 6 5 27 27 C 1.53713 * 108.16526 * 309.15843 * 24 6 5 28 28 O 1.42959 * 109.14637 * 52.53705 * 27 24 6 29 29 H 1.08999 * 109.46634 * 60.00345 * 1 2 3 30 30 H 1.09006 * 109.46881 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47456 * 299.99895 * 1 2 3 32 32 H 1.08995 * 109.47456 * 240.00105 * 2 1 3 33 33 H 1.09004 * 109.47317 * 119.99661 * 2 1 3 34 34 H 1.08998 * 109.67945 * 68.00060 * 5 3 2 35 35 H 1.08999 * 109.70930 * 307.47173 * 5 3 2 36 36 H 1.08004 * 119.87854 * 0.02562 * 11 10 7 37 37 H 1.08000 * 120.13444 * 179.70124 * 12 11 10 38 38 H 0.96998 * 120.00703 * 180.02562 * 17 16 14 39 39 H 1.08003 * 120.12858 * 180.02562 * 22 13 12 40 40 H 1.07999 * 119.87560 * 180.02562 * 23 22 13 41 41 H 1.08996 * 109.47812 * 66.92523 * 26 24 6 42 42 H 1.09000 * 109.47090 * 186.92574 * 26 24 6 43 43 H 1.09004 * 109.47383 * 306.92189 * 26 24 6 44 44 H 1.08998 * 109.65828 * 292.57281 * 27 24 6 45 45 H 1.09003 * 109.48810 * 172.40009 * 27 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6044 1.9827 -0.8405 5 6 3.5678 1.4455 -0.1258 6 7 4.0464 2.8241 0.0632 7 16 5.0850 3.5222 -1.0212 8 8 4.7773 4.9094 -1.0358 9 8 5.0569 2.7077 -2.1852 10 6 6.7094 3.3798 -0.3534 11 6 7.2605 4.4415 0.3474 12 6 8.5307 4.3438 0.8679 13 6 9.2658 3.1561 0.6969 14 6 10.5692 3.0419 1.2328 15 1 11.3129 2.4479 0.7223 16 6 10.8958 3.6985 2.4248 17 7 9.9474 4.1651 3.1955 18 14 12.6860 3.9086 2.9151 19 1 13.5578 3.2962 1.8806 20 1 13.0000 5.3550 3.0347 21 1 12.9233 3.2410 4.2202 22 6 8.6938 2.0827 -0.0108 23 6 7.4244 2.2051 -0.5280 24 6 3.5795 3.5619 1.2478 25 1 4.0131 3.1248 2.1471 26 6 3.9939 5.0305 1.1365 27 6 2.0469 3.4577 1.3039 28 8 1.6672 2.0818 1.2232 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8553 1.0896 -1.1151 35 1 4.0008 0.7986 0.6371 36 1 6.6926 5.3504 0.4815 37 1 8.9600 5.1738 1.4094 38 1 10.1737 4.6205 4.0215 39 1 9.2489 1.1664 -0.1475 40 1 6.9832 1.3824 -1.0712 41 1 3.4548 5.4989 0.3131 42 1 3.7562 5.5466 2.0667 43 1 5.0662 5.0924 0.9505 44 1 1.6113 4.0052 0.4681 45 1 1.6878 3.8800 2.2424 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403809773.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:43 Heat of formation + Delta-G solvation = -100.609072 kcal Electronic energy + Delta-G solvation = -28495.844710 eV Core-core repulsion = 24605.032307 eV Total energy + Delta-G solvation = -3890.812402 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -39.54014 -37.64943 -36.95064 -35.40392 -35.06253 -34.06647 -33.99981 -31.34430 -30.29395 -29.57640 -27.51541 -26.21571 -25.75421 -23.38215 -21.89538 -21.52753 -21.21449 -20.86595 -18.37389 -17.62597 -16.97295 -16.85297 -16.51983 -16.06126 -15.48248 -15.15350 -14.76992 -14.46819 -14.29953 -14.19811 -13.76055 -13.48896 -13.38521 -13.24646 -12.80336 -12.50963 -12.39933 -12.06680 -11.94682 -11.91005 -11.77527 -11.55699 -11.42676 -11.37537 -11.22289 -11.16711 -11.11106 -11.00141 -10.92001 -10.67513 -10.40268 -10.27517 -9.85046 -9.77880 -9.54371 -9.49381 -8.55481 -7.91666 -7.76184 -7.13005 -4.81435 1.11329 2.19759 2.84083 2.87296 2.90645 2.95713 3.47153 3.68267 3.70240 4.23864 4.44375 4.59165 4.81588 4.83572 4.97085 5.04845 5.06258 5.22653 5.29749 5.30781 5.44140 5.47013 5.58722 5.65990 5.71454 5.81853 5.83601 5.88089 5.95009 5.99939 6.06077 6.18131 6.26617 6.29150 6.58975 6.66174 6.71384 6.78403 6.92168 6.99446 7.16334 7.31540 7.35267 7.53144 7.73334 7.94451 8.28718 8.49027 8.59487 9.82206 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018328 B = 0.003179 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.353419 B = 8804.475097 C = 8819.906944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.080 3.920 4 H 0.061 0.939 5 C 0.089 3.911 6 N -1.004 6.004 7 S 2.690 3.310 8 O -0.976 6.976 9 O -0.985 6.985 10 C -0.780 4.780 11 C -0.020 4.020 12 C -0.174 4.174 13 C 0.146 3.854 14 C -0.446 4.446 15 H 0.088 0.912 16 C 0.074 3.926 17 N -0.774 5.774 18 Si 0.916 3.084 19 H -0.257 1.257 20 H -0.268 1.268 21 H -0.271 1.271 22 C -0.232 4.232 23 C 0.000 4.000 24 C 0.123 3.877 25 H 0.081 0.919 26 C -0.183 4.183 27 C 0.057 3.943 28 O -0.375 6.375 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.288 0.712 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.065 0.935 43 H 0.082 0.918 44 H 0.055 0.945 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.220 -3.113 -0.409 12.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C 0.021 3.979 4 H 0.079 0.921 5 C -0.037 4.037 6 N -0.840 5.840 7 S 2.792 3.208 8 O -0.967 6.967 9 O -0.976 6.976 10 C -0.876 4.876 11 C -0.040 4.040 12 C -0.194 4.194 13 C 0.143 3.857 14 C -0.473 4.473 15 H 0.106 0.894 16 C -0.148 4.148 17 N -0.397 5.397 18 Si 0.739 3.261 19 H -0.181 1.181 20 H -0.193 1.193 21 H -0.196 1.196 22 C -0.252 4.252 23 C -0.020 4.020 24 C 0.017 3.983 25 H 0.099 0.901 26 C -0.241 4.241 27 C -0.021 4.021 28 O -0.294 6.294 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.120 0.880 35 H 0.093 0.907 36 H 0.127 0.873 37 H 0.133 0.867 38 H 0.099 0.901 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.109 0.891 42 H 0.084 0.916 43 H 0.100 0.900 44 H 0.073 0.927 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.656 -2.706 -0.850 12.970 hybrid contribution 1.562 0.018 0.817 1.763 sum -11.094 -2.688 -0.033 11.415 Atomic orbital electron populations 1.21700 0.95157 1.01437 1.02242 1.21530 0.96770 0.93984 1.03163 1.22486 0.93541 0.94394 0.87478 0.92057 1.22104 0.94681 0.83164 1.03735 1.58112 1.62825 1.23100 1.39936 1.01458 0.73808 0.72856 0.72716 1.93560 1.84444 1.31903 1.86794 1.93450 1.87828 1.70414 1.45865 1.29258 1.22571 1.05064 1.30739 1.20338 0.95518 0.94969 0.93156 1.21217 0.95217 0.98367 1.04600 1.17852 0.91949 0.89712 0.86216 1.19896 0.96802 1.25269 1.05379 0.89402 1.26059 1.00211 0.92603 0.95881 1.69790 1.34894 1.25294 1.09731 0.86125 0.81371 0.79277 0.79321 1.18069 1.19308 1.19600 1.21136 0.96158 0.98801 1.09150 1.20141 0.94572 0.93726 0.93551 1.21697 0.94991 0.93015 0.88604 0.90064 1.22720 1.04985 0.93223 1.03174 1.23086 0.93629 0.82879 1.02531 1.87897 1.79600 1.23945 1.37964 0.92972 0.92768 0.91962 0.90219 0.90748 0.87983 0.90714 0.87336 0.86708 0.90131 0.88041 0.88065 0.89113 0.91630 0.89974 0.92679 0.88003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.81 37.16 0.36 -0.94 16 2 C -0.12 -1.14 5.65 -26.73 -0.15 -1.29 16 3 C 0.08 0.98 2.77 -26.58 -0.07 0.91 16 4 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 5 C 0.09 1.24 6.01 -3.54 -0.02 1.22 16 6 N -1.00 -16.12 3.33 -105.81 -0.35 -16.47 16 7 S 2.69 51.79 5.26 -107.50 -0.57 51.22 16 8 O -0.98 -19.62 12.50 -57.17 -0.71 -20.33 16 9 O -0.98 -20.58 15.90 -57.17 -0.91 -21.49 16 10 C -0.78 -17.03 5.95 -39.29 -0.23 -17.27 16 11 C -0.02 -0.45 8.68 -39.66 -0.34 -0.79 16 12 C -0.17 -4.28 8.65 -38.87 -0.34 -4.62 16 13 C 0.15 3.68 5.47 -106.83 -0.58 3.10 16 14 C -0.45 -10.91 9.02 -37.74 -0.34 -11.26 16 15 H 0.09 2.05 7.89 -52.48 -0.41 1.64 16 16 C 0.07 1.70 5.14 -17.34 -0.09 1.61 16 17 N -0.77 -18.44 11.38 55.55 0.63 -17.81 16 18 Si 0.92 17.12 29.59 -169.99 -5.03 12.09 16 19 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 20 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 21 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 22 C -0.23 -5.45 9.80 -38.87 -0.38 -5.83 16 23 C 0.00 0.00 9.49 -39.66 -0.38 -0.37 16 24 C 0.12 1.78 3.72 -67.20 -0.25 1.53 16 25 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 26 C -0.18 -2.73 7.58 37.16 0.28 -2.45 16 27 C 0.06 0.70 6.31 37.53 0.24 0.94 16 28 O -0.38 -4.91 9.93 -35.23 -0.35 -5.26 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.60 7.83 -51.93 -0.41 0.19 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 1.41 6.80 -51.93 -0.35 1.06 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.11 2.26 5.78 -52.48 -0.30 1.96 16 37 H 0.11 2.86 6.70 -52.49 -0.35 2.50 16 38 H 0.29 6.15 8.30 -40.82 -0.34 5.81 16 39 H 0.10 2.20 8.06 -52.48 -0.42 1.77 16 40 H 0.10 2.00 7.76 -52.49 -0.41 1.60 16 41 H 0.09 1.39 6.62 -51.93 -0.34 1.05 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.08 1.42 3.37 -51.93 -0.18 1.24 16 44 H 0.05 0.66 8.12 -51.93 -0.42 0.23 16 45 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 363.78 15.07 5.48 5.48 Total: -1.00 -28.71 363.78 -10.64 -39.35 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -6.54 Total: 8.73 kcal Atomic # 6 Polarization: -33.22 SS G_CDS: -2.30 Total: -35.51 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 0.28 Total: -34.28 kcal Atomic # 8 Polarization: -45.11 SS G_CDS: -1.97 Total: -47.08 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.03 Total: 12.09 kcal Atomic # 16 Polarization: 51.79 SS G_CDS: -0.57 Total: 51.22 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.71 -10.64 -39.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403809773.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.255 kcal (2) G-P(sol) polarization free energy of solvation -28.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds