Wall clock time and date at job start Tue Mar 31 2020 22:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47123 * 2 1 4 4 H 1.09002 * 109.51446 * 305.10367 * 3 2 1 5 5 C 1.53295 * 109.51668 * 184.99588 * 3 2 1 6 6 N 1.47147 * 108.38892 * 187.72204 * 5 3 2 7 7 S 1.65591 * 120.98606 * 230.51658 * 6 5 3 8 8 O 1.42100 * 106.40767 * 147.99901 * 7 6 5 9 9 O 1.42099 * 106.40239 * 15.07772 * 7 6 5 10 10 C 1.76202 * 107.21644 * 261.54154 * 7 6 5 11 11 C 1.38636 * 119.74700 * 263.47209 * 10 7 6 12 12 C 1.37618 * 120.24885 * 180.30472 * 11 10 7 13 13 C 1.40719 * 119.74269 * 359.42382 * 12 11 10 14 14 C 1.41390 * 120.24488 * 180.30135 * 13 12 11 15 15 H 1.08005 * 120.00482 * 212.72032 * 14 13 12 16 16 C 1.39950 * 120.00171 * 32.72217 * 14 13 12 17 17 N 1.30814 * 119.99977 * 15.16191 * 16 14 13 18 18 Si 1.86803 * 119.99813 * 195.16775 * 16 14 13 19 19 H 1.48494 * 109.47483 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47167 * 120.00051 * 18 16 14 21 21 H 1.48500 * 109.46547 * 239.99425 * 18 16 14 22 22 C 1.40715 * 119.51148 * 0.27650 * 13 12 11 23 23 C 1.37620 * 119.74498 * 0.02562 * 22 13 12 24 24 C 1.47154 * 118.03073 * 50.78699 * 6 5 3 25 25 H 1.08997 * 109.68654 * 68.94170 * 24 6 5 26 26 C 1.53001 * 109.67965 * 189.49324 * 24 6 5 27 27 C 1.53713 * 108.16526 * 309.15843 * 24 6 5 28 28 O 1.42959 * 109.14637 * 52.53705 * 27 24 6 29 29 H 1.08999 * 109.46634 * 60.00345 * 1 2 3 30 30 H 1.09006 * 109.46881 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47456 * 299.99895 * 1 2 3 32 32 H 1.08995 * 109.47456 * 240.00105 * 2 1 3 33 33 H 1.09004 * 109.47317 * 119.99661 * 2 1 3 34 34 H 1.08998 * 109.67945 * 68.00060 * 5 3 2 35 35 H 1.08999 * 109.70930 * 307.47173 * 5 3 2 36 36 H 1.08004 * 119.87854 * 0.02562 * 11 10 7 37 37 H 1.08000 * 120.13444 * 179.70124 * 12 11 10 38 38 H 0.96998 * 120.00703 * 180.02562 * 17 16 14 39 39 H 1.08003 * 120.12858 * 180.02562 * 22 13 12 40 40 H 1.07999 * 119.87560 * 180.02562 * 23 22 13 41 41 H 1.08996 * 109.47812 * 66.92523 * 26 24 6 42 42 H 1.09000 * 109.47090 * 186.92574 * 26 24 6 43 43 H 1.09004 * 109.47383 * 306.92189 * 26 24 6 44 44 H 1.08998 * 109.65828 * 292.57281 * 27 24 6 45 45 H 1.09003 * 109.48810 * 172.40009 * 27 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6044 1.9827 -0.8405 5 6 3.5678 1.4455 -0.1258 6 7 4.0464 2.8241 0.0632 7 16 5.0850 3.5222 -1.0212 8 8 4.7773 4.9094 -1.0358 9 8 5.0569 2.7077 -2.1852 10 6 6.7094 3.3798 -0.3534 11 6 7.2605 4.4415 0.3474 12 6 8.5307 4.3438 0.8679 13 6 9.2658 3.1561 0.6969 14 6 10.5692 3.0419 1.2328 15 1 11.3129 2.4479 0.7223 16 6 10.8958 3.6985 2.4248 17 7 9.9474 4.1651 3.1955 18 14 12.6860 3.9086 2.9151 19 1 13.5578 3.2962 1.8806 20 1 13.0000 5.3550 3.0347 21 1 12.9233 3.2410 4.2202 22 6 8.6938 2.0827 -0.0108 23 6 7.4244 2.2051 -0.5280 24 6 3.5795 3.5619 1.2478 25 1 4.0131 3.1248 2.1471 26 6 3.9939 5.0305 1.1365 27 6 2.0469 3.4577 1.3039 28 8 1.6672 2.0818 1.2232 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8553 1.0896 -1.1151 35 1 4.0008 0.7986 0.6371 36 1 6.6926 5.3504 0.4815 37 1 8.9600 5.1738 1.4094 38 1 10.1737 4.6205 4.0215 39 1 9.2489 1.1664 -0.1475 40 1 6.9832 1.3824 -1.0712 41 1 3.4548 5.4989 0.3131 42 1 3.7562 5.5466 2.0667 43 1 5.0662 5.0924 0.9505 44 1 1.6113 4.0052 0.4681 45 1 1.6878 3.8800 2.2424 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403809773.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:42 Heat of formation + Delta-G solvation = -117.469338 kcal Electronic energy + Delta-G solvation = -28496.575826 eV Core-core repulsion = 24605.032307 eV Total energy + Delta-G solvation = -3891.543518 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.58875 -39.44295 -38.50595 -36.90391 -36.33218 -35.75984 -34.99767 -32.42143 -32.05610 -31.38241 -28.55567 -27.66914 -27.16501 -24.37772 -23.33659 -23.04391 -22.88556 -21.85057 -19.88647 -19.42416 -18.53739 -18.06413 -17.75298 -17.30401 -17.12633 -16.36741 -15.93544 -15.87126 -15.66371 -15.51548 -15.21310 -14.91180 -14.61114 -14.31459 -14.24579 -14.07123 -13.86953 -13.69675 -13.34770 -13.16521 -13.02910 -12.93559 -12.92483 -12.83474 -12.68123 -12.62610 -12.15750 -12.08007 -11.98601 -11.87761 -11.78738 -11.62098 -11.33825 -11.25303 -11.17976 -10.99372 -9.84234 -9.65719 -9.59524 -8.86085 -6.66331 -0.42221 0.43419 0.99002 1.35376 1.39554 1.51493 2.04288 2.12135 2.51245 2.77264 2.87262 3.39553 3.43894 3.65624 3.69720 3.90790 4.07416 4.09090 4.21339 4.21940 4.24807 4.31273 4.48988 4.58723 4.64860 4.67771 4.74792 4.79762 4.84106 4.90102 4.96742 5.03149 5.05882 5.14832 5.16876 5.19414 5.27605 5.46038 5.48881 5.51384 5.53413 5.58682 5.71198 5.90368 6.13495 6.19867 6.46235 6.67302 6.76220 8.12539 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018328 B = 0.003179 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.353419 B = 8804.475097 C = 8819.906944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C 0.081 3.919 4 H 0.063 0.937 5 C 0.080 3.920 6 N -1.000 6.000 7 S 2.715 3.285 8 O -0.985 6.985 9 O -1.000 7.000 10 C -0.791 4.791 11 C -0.021 4.021 12 C -0.197 4.197 13 C 0.119 3.881 14 C -0.478 4.478 15 H 0.090 0.910 16 C 0.036 3.964 17 N -0.806 5.806 18 Si 0.989 3.011 19 H -0.255 1.255 20 H -0.262 1.262 21 H -0.262 1.262 22 C -0.250 4.250 23 C -0.005 4.005 24 C 0.118 3.882 25 H 0.080 0.920 26 C -0.185 4.185 27 C 0.060 3.940 28 O -0.381 6.381 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.123 0.877 37 H 0.103 0.897 38 H 0.297 0.703 39 H 0.112 0.888 40 H 0.124 0.876 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.498 -3.650 -0.007 13.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 C 0.021 3.979 4 H 0.081 0.919 5 C -0.045 4.045 6 N -0.838 5.838 7 S 2.814 3.186 8 O -0.975 6.975 9 O -0.990 6.990 10 C -0.883 4.883 11 C -0.040 4.040 12 C -0.218 4.218 13 C 0.115 3.885 14 C -0.505 4.505 15 H 0.108 0.892 16 C -0.182 4.182 17 N -0.429 5.429 18 Si 0.809 3.191 19 H -0.179 1.179 20 H -0.187 1.187 21 H -0.187 1.187 22 C -0.270 4.270 23 C -0.024 4.024 24 C 0.013 3.987 25 H 0.098 0.902 26 C -0.243 4.243 27 C -0.019 4.019 28 O -0.300 6.300 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.112 0.888 33 H 0.093 0.907 34 H 0.121 0.879 35 H 0.099 0.901 36 H 0.140 0.860 37 H 0.121 0.879 38 H 0.108 0.892 39 H 0.130 0.870 40 H 0.142 0.858 41 H 0.105 0.895 42 H 0.112 0.888 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.908 -3.249 -0.449 14.290 hybrid contribution 1.782 0.175 0.664 1.910 sum -12.126 -3.075 0.216 12.512 Atomic orbital electron populations 1.21675 0.94318 1.02321 1.01933 1.21577 0.97451 0.92365 1.03919 1.22586 0.92011 0.95911 0.87349 0.91927 1.22380 0.96210 0.81858 1.04048 1.57883 1.61572 1.24270 1.40114 1.00780 0.72899 0.72535 0.72431 1.93558 1.84163 1.32733 1.87058 1.93425 1.87845 1.70789 1.46963 1.29812 1.24744 1.04420 1.29343 1.20551 0.94958 0.95912 0.92620 1.21230 0.96305 0.98259 1.05982 1.18192 0.92802 0.90350 0.87123 1.20146 0.96970 1.26907 1.06525 0.89235 1.26904 1.04489 0.91619 0.95196 1.69823 1.37011 1.25726 1.10357 0.85042 0.75684 0.79354 0.79046 1.17870 1.18684 1.18686 1.21365 0.96995 0.99019 1.09668 1.20449 0.94172 0.94598 0.93219 1.21902 0.96816 0.92413 0.87614 0.90208 1.22692 1.03081 0.93949 1.04537 1.23177 0.91564 0.82853 1.04267 1.87908 1.79410 1.24298 1.38340 0.92681 0.91332 0.92853 0.88813 0.90697 0.87896 0.90147 0.85950 0.87934 0.89236 0.86973 0.85822 0.89541 0.88842 0.92581 0.92150 0.85309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.81 71.98 0.71 -1.50 16 2 C -0.12 -1.97 5.65 30.59 0.17 -1.80 16 3 C 0.08 1.80 2.77 30.69 0.09 1.89 16 4 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 5 C 0.08 2.10 6.01 86.35 0.52 2.62 16 6 N -1.00 -30.77 3.33 -488.66 -1.63 -32.40 16 7 S 2.71 102.49 5.26 -56.49 -0.30 102.20 16 8 O -0.98 -38.90 12.50 -128.00 -1.60 -40.50 16 9 O -1.00 -40.73 15.90 -128.00 -2.04 -42.77 16 10 C -0.79 -34.67 5.95 22.46 0.13 -34.53 16 11 C -0.02 -0.96 8.68 22.22 0.19 -0.77 16 12 C -0.20 -10.11 8.65 22.73 0.20 -9.92 16 13 C 0.12 6.18 5.47 -21.29 -0.12 6.07 16 14 C -0.48 -24.13 9.02 23.46 0.21 -23.92 16 15 H 0.09 4.31 7.89 -2.91 -0.02 4.28 16 16 C 0.04 1.69 5.14 85.26 0.44 2.13 16 17 N -0.81 -39.22 11.38 21.83 0.25 -38.98 16 18 Si 0.99 35.13 29.59 68.60 2.03 37.16 16 19 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 20 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 21 H -0.26 -8.89 7.11 99.48 0.71 -8.18 16 22 C -0.25 -12.03 9.80 22.73 0.22 -11.80 16 23 C 0.00 -0.21 9.49 22.22 0.21 0.00 16 24 C 0.12 3.22 3.72 45.11 0.17 3.39 16 25 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 26 C -0.18 -5.25 7.58 71.98 0.55 -4.71 16 27 C 0.06 1.30 6.31 72.22 0.46 1.76 16 28 O -0.38 -9.00 9.93 -148.98 -1.48 -10.48 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.05 0.91 7.83 -2.39 -0.02 0.89 16 32 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.10 2.68 6.80 -2.39 -0.02 2.66 16 35 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.12 5.21 5.78 -2.91 -0.02 5.19 16 37 H 0.10 5.36 6.70 -2.91 -0.02 5.35 16 38 H 0.30 12.85 8.30 -92.71 -0.77 12.08 16 39 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 40 H 0.12 4.82 7.76 -2.91 -0.02 4.79 16 41 H 0.09 2.53 6.62 -2.39 -0.02 2.51 16 42 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.06 1.90 3.37 -2.39 -0.01 1.90 16 44 H 0.06 1.27 8.12 -2.39 -0.02 1.26 16 45 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -62.12 363.78 0.37 -61.75 By element: Atomic # 1 Polarization: 34.11 SS G_CDS: 0.99 Total: 35.11 kcal Atomic # 6 Polarization: -75.24 SS G_CDS: 4.14 Total: -71.09 kcal Atomic # 7 Polarization: -69.99 SS G_CDS: -1.38 Total: -71.37 kcal Atomic # 8 Polarization: -88.63 SS G_CDS: -5.12 Total: -93.75 kcal Atomic # 14 Polarization: 35.13 SS G_CDS: 2.03 Total: 37.16 kcal Atomic # 16 Polarization: 102.49 SS G_CDS: -0.30 Total: 102.20 kcal Total: -62.12 0.37 -61.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403809773.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.721 kcal (2) G-P(sol) polarization free energy of solvation -62.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds