Wall clock time and date at job start Tue Mar 31 2020 22:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47299 * 2 1 4 4 H 1.09003 * 109.51390 * 54.90095 * 3 2 1 5 5 C 1.53294 * 109.51156 * 174.99867 * 3 2 1 6 6 N 1.47156 * 108.38370 * 172.22696 * 5 3 2 7 7 S 1.65600 * 120.98184 * 129.44781 * 6 5 3 8 8 O 1.42101 * 106.39727 * 211.58349 * 7 6 5 9 9 O 1.42098 * 106.40112 * 344.50125 * 7 6 5 10 10 C 1.76193 * 107.21905 * 98.04472 * 7 6 5 11 11 C 1.38640 * 119.74638 * 269.71894 * 10 7 6 12 12 C 1.37624 * 120.24576 * 179.76279 * 11 10 7 13 13 C 1.40715 * 119.74402 * 0.49658 * 12 11 10 14 14 C 1.41393 * 120.24475 * 179.78636 * 13 12 11 15 15 H 1.07998 * 120.00406 * 205.58360 * 14 13 12 16 16 C 1.39952 * 119.99938 * 25.58203 * 14 13 12 17 17 N 1.30822 * 120.00086 * 17.29361 * 16 14 13 18 18 Si 1.86802 * 119.99986 * 197.29330 * 16 14 13 19 19 H 1.48501 * 109.47150 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47013 * 120.00214 * 18 16 14 21 21 H 1.48498 * 109.46875 * 239.99884 * 18 16 14 22 22 C 1.40714 * 119.51221 * 359.76257 * 13 12 11 23 23 C 1.37620 * 119.74518 * 359.97438 * 22 13 12 24 24 C 1.47154 * 118.03569 * 309.71741 * 6 5 3 25 25 H 1.09007 * 109.68067 * 290.56274 * 24 6 5 26 26 C 1.52993 * 109.68165 * 170.00847 * 24 6 5 27 27 C 1.52879 * 108.60761 * 50.22770 * 24 6 5 28 28 O 1.42960 * 109.51372 * 294.74828 * 3 2 1 29 29 H 1.09000 * 109.47300 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46917 * 300.00119 * 1 2 3 31 31 H 1.08992 * 109.47345 * 59.99592 * 1 2 3 32 32 H 1.08999 * 109.46917 * 239.99881 * 2 1 3 33 33 H 1.09002 * 109.46804 * 120.00420 * 2 1 3 34 34 H 1.09005 * 109.68340 * 52.50443 * 5 3 2 35 35 H 1.09001 * 109.68632 * 291.95132 * 5 3 2 36 36 H 1.07995 * 119.88025 * 0.02562 * 11 10 7 37 37 H 1.08002 * 120.12697 * 180.28444 * 12 11 10 38 38 H 0.97001 * 120.00472 * 179.97438 * 17 16 14 39 39 H 1.08003 * 120.12637 * 180.02562 * 22 13 12 40 40 H 1.08002 * 119.87402 * 180.02562 * 23 22 13 41 41 H 1.09004 * 109.47348 * 58.81243 * 26 24 6 42 42 H 1.08997 * 109.47210 * 178.80771 * 26 24 6 43 43 H 1.08996 * 109.47376 * 298.80549 * 26 24 6 44 44 H 1.08995 * 109.58441 * 187.92599 * 27 24 6 45 45 H 1.08997 * 109.40944 * 67.84222 * 27 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6045 1.9826 0.8406 5 6 3.5678 1.4453 0.1260 6 7 4.0466 2.8237 -0.0643 7 16 5.0845 3.5229 1.0201 8 8 4.7833 4.9116 1.0255 9 8 5.0481 2.7151 2.1886 10 6 6.7106 3.3691 0.3594 11 6 7.4752 2.2540 0.6662 12 6 8.7447 2.1210 0.1518 13 6 9.2699 3.1272 -0.6799 14 6 10.5747 3.0036 -1.2105 15 1 11.1332 3.8871 -1.4820 16 6 11.1424 1.7362 -1.3838 17 7 10.3805 0.6727 -1.3847 18 14 12.9881 1.5630 -1.6140 19 1 13.6201 2.9062 -1.5737 20 1 13.5458 0.7212 -0.5252 21 1 13.2655 0.9239 -2.9254 22 6 8.4869 4.2572 -0.9801 23 6 7.2179 4.3665 -0.4590 24 6 3.5710 3.5645 -1.2435 25 1 4.0038 3.1340 -2.1466 26 6 3.9775 5.0348 -1.1268 27 6 2.0473 3.4565 -1.3056 28 8 1.6674 2.0807 -1.2237 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 4.0003 0.7978 -0.6369 35 1 3.8553 1.0901 1.1156 36 1 7.0714 1.4848 1.3078 37 1 9.3369 1.2493 0.3884 38 1 10.7739 -0.2057 -1.5052 39 1 8.8800 5.0352 -1.6178 40 1 6.6149 5.2327 -0.6884 41 1 5.0622 5.1067 -1.0465 42 1 3.6421 5.5758 -2.0116 43 1 3.5178 5.4695 -0.2393 44 1 1.6891 3.8778 -2.2449 45 1 1.6110 4.0050 -0.4708 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403809775.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:50 Heat of formation + Delta-G solvation = -115.013007 kcal Electronic energy + Delta-G solvation = -28486.833243 eV Core-core repulsion = 24595.396239 eV Total energy + Delta-G solvation = -3891.437004 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.61493 -39.42775 -38.50368 -36.90164 -36.32561 -35.82134 -35.01299 -32.41014 -32.08586 -31.34525 -28.56111 -27.68659 -27.18096 -24.39158 -23.31550 -23.03712 -22.87185 -21.85234 -19.90431 -19.46931 -18.48546 -18.03620 -17.79551 -17.28416 -17.15971 -16.35625 -16.01711 -15.84853 -15.68204 -15.50433 -15.19998 -14.91597 -14.62935 -14.34939 -14.25408 -14.03156 -13.89775 -13.64190 -13.34218 -13.15183 -13.01321 -12.94950 -12.89729 -12.85913 -12.69859 -12.60863 -12.16665 -12.04724 -12.00133 -11.86847 -11.76908 -11.51117 -11.37134 -11.25350 -11.14271 -10.99078 -9.87154 -9.69105 -9.57603 -8.89232 -6.67147 -0.40208 0.45392 1.01990 1.34506 1.40154 1.51615 2.05018 2.10422 2.48866 2.76970 2.88484 3.40031 3.46861 3.67376 3.71295 3.90313 4.06657 4.08472 4.21409 4.22555 4.26262 4.31824 4.48111 4.58580 4.65689 4.68941 4.77752 4.81626 4.83102 4.89232 4.96024 5.01517 5.10281 5.14704 5.18029 5.20911 5.26660 5.47163 5.47936 5.53836 5.57745 5.61153 5.74767 5.90833 6.12875 6.19580 6.46345 6.65772 6.77931 8.06498 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016598 B = 0.003338 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.592759 B = 8386.456511 C = 9022.039166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 C 0.083 3.917 4 H 0.064 0.936 5 C 0.081 3.919 6 N -1.000 6.000 7 S 2.714 3.286 8 O -0.981 6.981 9 O -1.004 7.004 10 C -0.797 4.797 11 C -0.024 4.024 12 C -0.205 4.205 13 C 0.112 3.888 14 C -0.466 4.466 15 H 0.092 0.908 16 C 0.034 3.966 17 N -0.797 5.797 18 Si 0.992 3.008 19 H -0.254 1.254 20 H -0.262 1.262 21 H -0.261 1.261 22 C -0.256 4.256 23 C -0.003 4.003 24 C 0.116 3.884 25 H 0.080 0.920 26 C -0.191 4.191 27 C 0.058 3.942 28 O -0.381 6.381 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.298 0.702 39 H 0.113 0.887 40 H 0.134 0.866 41 H 0.057 0.943 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.132 0.868 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.441 -0.639 -1.692 13.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.154 4.154 3 C 0.023 3.977 4 H 0.081 0.919 5 C -0.044 4.044 6 N -0.838 5.838 7 S 2.813 3.187 8 O -0.972 6.972 9 O -0.995 6.995 10 C -0.890 4.890 11 C -0.044 4.044 12 C -0.225 4.225 13 C 0.108 3.892 14 C -0.493 4.493 15 H 0.110 0.890 16 C -0.185 4.185 17 N -0.420 5.420 18 Si 0.811 3.189 19 H -0.177 1.177 20 H -0.187 1.187 21 H -0.185 1.185 22 C -0.277 4.277 23 C -0.023 4.023 24 C 0.011 3.989 25 H 0.098 0.902 26 C -0.248 4.248 27 C -0.020 4.020 28 O -0.300 6.300 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.117 0.883 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.109 0.891 39 H 0.131 0.869 40 H 0.151 0.849 41 H 0.076 0.924 42 H 0.117 0.883 43 H 0.110 0.890 44 H 0.150 0.850 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.808 -0.611 -1.063 13.862 hybrid contribution 1.808 -0.340 -0.370 1.876 sum -12.000 -0.951 -1.433 12.123 Atomic orbital electron populations 1.21669 0.94147 1.02332 1.02003 1.21577 0.97579 0.92451 1.03805 1.22554 0.91835 0.95886 0.87415 0.91854 1.22338 0.96287 0.82038 1.03758 1.57869 1.61496 1.23985 1.40497 1.00787 0.72903 0.72628 0.72370 1.93551 1.84229 1.32367 1.87048 1.93414 1.87838 1.71225 1.47026 1.29727 1.24339 1.07422 1.27499 1.20430 0.94347 0.94451 0.95126 1.21320 0.96834 1.01857 1.02538 1.18203 0.92646 0.91032 0.87300 1.20247 0.99230 0.94547 1.35263 0.89004 1.27013 1.05881 0.94331 0.91298 1.69849 1.40069 1.00920 1.31173 0.85005 0.74736 0.79984 0.79201 1.17715 1.18674 1.18498 1.21317 0.96061 1.01847 1.08434 1.20600 0.95171 0.95108 0.91396 1.21767 0.96816 0.92629 0.87735 0.90210 1.22824 1.03107 0.93637 1.05271 1.23048 0.91768 0.82798 1.04389 1.87910 1.79419 1.24434 1.38194 0.91361 0.92632 0.92719 0.90791 0.89032 0.90509 0.88295 0.87142 0.87301 0.89058 0.86896 0.84892 0.92406 0.88338 0.89006 0.85049 0.92210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.81 71.98 0.71 -1.58 16 2 C -0.12 -2.13 5.64 30.59 0.17 -1.96 16 3 C 0.08 1.91 2.78 30.69 0.09 2.00 16 4 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 5 C 0.08 2.26 6.02 86.35 0.52 2.78 16 6 N -1.00 -31.33 3.35 -490.08 -1.64 -32.97 16 7 S 2.71 103.94 5.32 -56.49 -0.30 103.64 16 8 O -0.98 -38.11 12.49 -128.00 -1.60 -39.71 16 9 O -1.00 -42.56 15.71 -128.00 -2.01 -44.57 16 10 C -0.80 -35.46 6.00 22.46 0.13 -35.33 16 11 C -0.02 -1.13 9.49 22.22 0.21 -0.92 16 12 C -0.21 -10.70 8.69 22.73 0.20 -10.50 16 13 C 0.11 5.84 5.56 -21.29 -0.12 5.72 16 14 C -0.47 -23.39 9.05 23.46 0.21 -23.18 16 15 H 0.09 4.36 7.90 -2.91 -0.02 4.33 16 16 C 0.03 1.58 5.14 85.26 0.44 2.02 16 17 N -0.80 -38.59 11.00 21.83 0.24 -38.35 16 18 Si 0.99 34.66 29.59 68.60 2.03 36.69 16 19 H -0.25 -8.68 7.11 99.48 0.71 -7.97 16 20 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 21 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 22 C -0.26 -12.26 9.80 22.73 0.22 -12.04 16 23 C 0.00 -0.15 8.84 22.22 0.20 0.05 16 24 C 0.12 3.08 3.69 44.82 0.17 3.24 16 25 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 26 C -0.19 -5.05 7.53 71.98 0.54 -4.51 16 27 C 0.06 1.24 6.27 71.94 0.45 1.69 16 28 O -0.38 -9.10 9.93 -148.98 -1.48 -10.58 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 0.95 7.83 -2.39 -0.02 0.93 16 32 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 35 H 0.10 2.81 6.80 -2.39 -0.02 2.79 16 36 H 0.11 4.95 7.59 -2.91 -0.02 4.93 16 37 H 0.11 5.80 6.23 -2.91 -0.02 5.79 16 38 H 0.30 12.78 8.30 -92.71 -0.77 12.01 16 39 H 0.11 4.93 8.06 -2.91 -0.02 4.91 16 40 H 0.13 5.10 5.37 -2.91 -0.02 5.09 16 41 H 0.06 1.79 3.53 -2.38 -0.01 1.78 16 42 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.09 2.62 6.21 -2.39 -0.01 2.60 16 44 H 0.13 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.06 1.24 8.13 -2.39 -0.02 1.22 16 Total: -1.00 -62.44 362.24 0.37 -62.06 By element: Atomic # 1 Polarization: 35.30 SS G_CDS: 1.00 Total: 36.30 kcal Atomic # 6 Polarization: -76.65 SS G_CDS: 4.14 Total: -72.51 kcal Atomic # 7 Polarization: -69.92 SS G_CDS: -1.40 Total: -71.32 kcal Atomic # 8 Polarization: -89.77 SS G_CDS: -5.09 Total: -94.86 kcal Atomic # 14 Polarization: 34.66 SS G_CDS: 2.03 Total: 36.69 kcal Atomic # 16 Polarization: 103.94 SS G_CDS: -0.30 Total: 103.64 kcal Total: -62.44 0.37 -62.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403809775.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.949 kcal (2) G-P(sol) polarization free energy of solvation -62.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds