Wall clock time and date at job start Tue Mar 31 2020 22:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47522 * 2 1 4 4 H 1.08997 * 109.51161 * 304.89865 * 3 2 1 5 5 C 1.52873 * 109.58425 * 184.88089 * 3 2 1 6 6 N 1.47152 * 108.60916 * 187.92122 * 5 3 2 7 7 S 1.65596 * 120.98193 * 230.50118 * 6 5 3 8 8 O 1.42099 * 106.40104 * 156.17981 * 7 6 5 9 9 O 1.42095 * 106.40625 * 23.25804 * 7 6 5 10 10 C 1.76202 * 107.21807 * 269.71788 * 7 6 5 11 11 C 1.38635 * 119.75247 * 90.00302 * 10 7 6 12 12 C 1.37611 * 120.25212 * 180.02562 * 11 10 7 13 13 C 1.40717 * 119.74429 * 359.97438 * 12 11 10 14 14 C 1.41393 * 120.24544 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00167 * 334.84990 * 14 13 12 16 16 C 1.39947 * 120.00447 * 154.85088 * 14 13 12 17 17 N 1.30829 * 119.99580 * 334.27844 * 16 14 13 18 18 Si 1.86794 * 120.00413 * 154.27772 * 16 14 13 19 19 H 1.48504 * 109.47556 * 180.02562 * 18 16 14 20 20 H 1.48495 * 109.47307 * 60.00117 * 18 16 14 21 21 H 1.48499 * 109.47060 * 300.00218 * 18 16 14 22 22 C 1.40717 * 119.51251 * 0.27207 * 13 12 11 23 23 C 1.37622 * 119.74258 * 359.45159 * 22 13 12 24 24 C 1.47149 * 118.03468 * 50.22852 * 6 5 3 25 25 H 1.09000 * 109.68122 * 189.95635 * 24 6 5 26 26 C 1.53003 * 109.68460 * 69.43918 * 24 6 5 27 27 C 1.53298 * 108.38450 * 309.71575 * 24 6 5 28 28 O 1.42958 * 109.51283 * 64.99821 * 3 2 1 29 29 H 1.09003 * 109.46728 * 60.00104 * 1 2 3 30 30 H 1.08994 * 109.47253 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47108 * 300.00382 * 1 2 3 32 32 H 1.09003 * 109.47108 * 239.99618 * 2 1 3 33 33 H 1.09003 * 109.46728 * 119.99896 * 2 1 3 34 34 H 1.08997 * 109.61993 * 68.10075 * 5 3 2 35 35 H 1.09003 * 109.52580 * 307.68615 * 5 3 2 36 36 H 1.07997 * 119.87250 * 0.04365 * 11 10 7 37 37 H 1.07999 * 120.13162 * 179.97438 * 12 11 10 38 38 H 0.96996 * 120.00212 * 354.29995 * 17 16 14 39 39 H 1.07998 * 120.12873 * 179.72603 * 22 13 12 40 40 H 1.07997 * 119.87625 * 180.27232 * 23 22 13 41 41 H 1.09001 * 109.47100 * 59.99829 * 26 24 6 42 42 H 1.08993 * 109.47434 * 180.02562 * 26 24 6 43 43 H 1.09007 * 109.46744 * 300.00043 * 26 24 6 44 44 H 1.08997 * 109.51211 * 172.22460 * 27 24 6 45 45 H 1.09000 * 109.51229 * 292.37800 * 27 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6073 1.9816 -0.8426 5 6 3.5639 1.4471 -0.1225 6 7 4.0464 2.8238 0.0707 7 16 5.0887 3.5214 -1.0105 8 8 4.9191 4.9264 -0.8820 9 8 4.9176 2.8269 -2.2383 10 6 6.7248 3.1656 -0.4615 11 6 7.3629 2.0157 -0.9003 12 6 8.6404 1.7275 -0.4777 13 6 9.2993 2.6054 0.4028 14 6 10.6121 2.3199 0.8433 15 1 10.9655 1.2996 0.8622 16 6 11.4538 3.3595 1.2549 17 7 11.2723 4.5699 0.7927 18 14 12.8362 3.0190 2.4640 19 1 13.5763 4.2772 2.7372 20 1 13.7639 2.0143 1.8852 21 1 12.2673 2.4949 3.7316 22 6 8.6399 3.7670 0.8457 23 6 7.3645 4.0380 0.4055 24 6 3.5703 3.5643 1.2498 25 1 3.8638 4.6110 1.1690 26 6 4.1731 2.9566 2.5180 27 6 2.0419 3.4584 1.3027 28 8 1.6624 2.0825 1.2212 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8526 1.0924 -1.1120 35 1 3.9928 0.7973 0.6404 36 1 6.8556 1.3437 -1.5766 37 1 9.1355 0.8309 -0.8204 38 1 10.6091 4.7316 0.1036 39 1 9.1346 4.4454 1.5250 40 1 6.8581 4.9311 0.7407 41 1 5.2604 3.0165 2.4683 42 1 3.8180 3.5073 3.3890 43 1 3.8701 1.9128 2.6002 44 1 1.6799 3.8811 2.2398 45 1 1.6099 4.0055 0.4647 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000403809776.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:56 Heat of formation + Delta-G solvation = -121.264419 kcal Electronic energy + Delta-G solvation = -28432.695134 eV Core-core repulsion = 24540.987048 eV Total energy + Delta-G solvation = -3891.708086 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -39.69952 -37.85553 -36.73265 -35.33073 -35.22144 -34.28180 -34.13271 -31.20304 -30.17014 -29.53833 -27.87752 -26.20429 -25.65518 -23.97496 -21.88404 -21.51364 -21.37649 -20.32286 -18.43600 -18.25616 -17.54445 -16.75366 -16.72498 -15.69960 -15.29382 -15.08315 -14.81212 -14.70839 -14.26704 -13.93633 -13.85348 -13.76964 -13.38558 -13.19978 -12.82081 -12.55698 -12.34525 -12.25152 -12.08128 -11.96671 -11.86829 -11.58010 -11.55469 -11.44360 -11.36888 -11.27491 -11.15759 -11.12473 -11.03897 -10.61093 -10.43667 -10.27828 -10.05071 -9.96338 -9.63230 -9.37140 -8.63974 -8.15874 -7.99234 -7.57929 -4.93685 1.04593 2.15385 2.70173 2.95662 3.00552 3.17407 3.41730 3.65369 3.74446 4.15547 4.39429 4.51868 4.75273 4.82790 4.92071 4.99641 5.04188 5.14200 5.17507 5.24651 5.38962 5.43912 5.51841 5.59536 5.62435 5.73060 5.79637 5.84038 5.90106 5.91740 5.96987 5.99272 6.15166 6.26782 6.41770 6.47773 6.54562 6.79125 6.82305 7.04959 7.11694 7.23637 7.38412 7.41409 7.45624 7.80214 7.98513 8.36988 8.48301 9.62585 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018983 B = 0.003162 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.667760 B = 8854.253776 C = 8981.960405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.080 3.920 4 H 0.062 0.938 5 C 0.091 3.909 6 N -1.002 6.002 7 S 2.691 3.309 8 O -0.980 6.980 9 O -0.981 6.981 10 C -0.797 4.797 11 C 0.008 3.992 12 C -0.237 4.237 13 C 0.118 3.882 14 C -0.483 4.483 15 H 0.086 0.914 16 C 0.033 3.967 17 N -0.765 5.765 18 Si 1.069 2.931 19 H -0.270 1.270 20 H -0.272 1.272 21 H -0.270 1.270 22 C -0.235 4.235 23 C 0.007 3.993 24 C 0.112 3.888 25 H 0.107 0.893 26 C -0.159 4.159 27 C 0.059 3.941 28 O -0.372 6.372 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.306 0.694 39 H 0.110 0.890 40 H 0.104 0.896 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.103 0.897 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.698 -5.079 2.984 14.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C 0.021 3.979 4 H 0.080 0.920 5 C -0.034 4.034 6 N -0.837 5.837 7 S 2.793 3.207 8 O -0.971 6.971 9 O -0.972 6.972 10 C -0.893 4.893 11 C -0.012 4.012 12 C -0.258 4.258 13 C 0.114 3.886 14 C -0.509 4.509 15 H 0.104 0.896 16 C -0.192 4.192 17 N -0.386 5.386 18 Si 0.890 3.110 19 H -0.194 1.194 20 H -0.197 1.197 21 H -0.196 1.196 22 C -0.255 4.255 23 C -0.014 4.014 24 C 0.006 3.994 25 H 0.125 0.875 26 C -0.218 4.218 27 C -0.020 4.020 28 O -0.290 6.290 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.118 0.882 35 H 0.093 0.907 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.128 0.872 40 H 0.122 0.878 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.121 0.879 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.895 -3.880 3.188 13.838 hybrid contribution -0.441 -0.840 -0.683 1.169 sum -13.336 -4.720 2.505 14.366 Atomic orbital electron populations 1.21696 0.95135 1.01435 1.02244 1.21522 0.96786 0.93949 1.03117 1.22398 0.93542 0.94423 0.87542 0.92046 1.21963 0.94729 0.83272 1.03475 1.58158 1.62456 1.23347 1.39779 1.01325 0.73889 0.72757 0.72774 1.93471 1.86930 1.30088 1.86630 1.93465 1.86946 1.75271 1.41544 1.29144 1.22644 1.10542 1.26950 1.20151 0.94364 0.92817 0.93897 1.20961 0.96719 1.03105 1.04991 1.17868 0.92679 0.90859 0.87222 1.20983 0.97344 0.97601 1.34966 0.89605 1.27345 1.01817 0.91720 0.98341 1.70456 1.27617 1.22325 1.18203 0.83572 0.74406 0.77369 0.75605 1.19392 1.19675 1.19556 1.21180 0.95879 1.01864 1.06562 1.20166 0.94569 0.94641 0.91994 1.21633 0.94928 0.97049 0.85784 0.87512 1.22066 1.01845 1.01905 0.95954 1.22908 0.93360 0.83223 1.02473 1.87899 1.79356 1.23688 1.38091 0.92963 0.92782 0.91967 0.90248 0.90808 0.88236 0.90717 0.87828 0.88138 0.88012 0.87203 0.87807 0.91563 0.91839 0.91736 0.87878 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.81 37.16 0.36 -0.90 16 2 C -0.12 -1.09 5.64 -26.73 -0.15 -1.24 16 3 C 0.08 0.94 2.76 -26.80 -0.07 0.87 16 4 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 5 C 0.09 1.23 5.58 -3.75 -0.02 1.21 16 6 N -1.00 -15.49 3.04 -106.27 -0.32 -15.81 16 7 S 2.69 51.90 5.74 -107.50 -0.62 51.28 16 8 O -0.98 -20.69 15.88 -57.17 -0.91 -21.59 16 9 O -0.98 -20.46 15.87 -57.17 -0.91 -21.37 16 10 C -0.80 -17.27 6.00 -39.29 -0.24 -17.51 16 11 C 0.01 0.17 9.49 -39.66 -0.38 -0.20 16 12 C -0.24 -5.55 9.80 -38.87 -0.38 -5.93 16 13 C 0.12 2.93 5.30 -106.82 -0.57 2.36 16 14 C -0.48 -11.76 8.98 -37.74 -0.34 -12.10 16 15 H 0.09 1.99 7.96 -52.49 -0.42 1.58 16 16 C 0.03 0.78 4.93 -17.34 -0.09 0.69 16 17 N -0.77 -18.89 12.32 55.55 0.68 -18.21 16 18 Si 1.07 19.49 30.00 -169.99 -5.10 14.39 16 19 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 20 H -0.27 -4.68 7.11 56.52 0.40 -4.28 16 21 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 22 C -0.23 -5.70 7.96 -38.87 -0.31 -6.01 16 23 C 0.01 0.15 9.49 -39.66 -0.38 -0.23 16 24 C 0.11 1.52 3.30 -67.42 -0.22 1.30 16 25 H 0.11 1.49 6.95 -51.93 -0.36 1.13 16 26 C -0.16 -2.04 9.25 37.16 0.34 -1.70 16 27 C 0.06 0.67 6.36 37.31 0.24 0.91 16 28 O -0.37 -4.54 9.55 -35.23 -0.34 -4.88 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.58 7.82 -51.93 -0.41 0.17 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.10 1.34 6.94 -51.93 -0.36 0.98 16 35 H 0.07 0.95 7.68 -51.93 -0.40 0.55 16 36 H 0.10 2.05 7.60 -52.49 -0.40 1.65 16 37 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 38 H 0.31 7.82 6.70 -40.82 -0.27 7.55 16 39 H 0.11 2.70 6.50 -52.49 -0.34 2.36 16 40 H 0.10 2.17 7.60 -52.49 -0.40 1.77 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.83 7.24 -51.93 -0.38 0.45 16 44 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 372.71 15.07 5.62 5.62 Total: -1.00 -29.13 372.71 -10.84 -39.97 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -6.76 Total: 9.09 kcal Atomic # 6 Polarization: -36.29 SS G_CDS: -2.19 Total: -38.48 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.36 Total: -34.02 kcal Atomic # 8 Polarization: -45.69 SS G_CDS: -2.15 Total: -47.84 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.10 Total: 14.39 kcal Atomic # 16 Polarization: 51.90 SS G_CDS: -0.62 Total: 51.28 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.13 -10.84 -39.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403809776.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.294 kcal (2) G-P(sol) polarization free energy of solvation -29.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds