Wall clock time and date at job start Tue Mar 31 2020 22:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47522 * 2 1 4 4 H 1.08997 * 109.51161 * 304.89865 * 3 2 1 5 5 C 1.52873 * 109.58425 * 184.88089 * 3 2 1 6 6 N 1.47152 * 108.60916 * 187.92122 * 5 3 2 7 7 S 1.65596 * 120.98193 * 230.50118 * 6 5 3 8 8 O 1.42099 * 106.40104 * 156.17981 * 7 6 5 9 9 O 1.42095 * 106.40625 * 23.25804 * 7 6 5 10 10 C 1.76202 * 107.21807 * 269.71788 * 7 6 5 11 11 C 1.38635 * 119.75247 * 90.00302 * 10 7 6 12 12 C 1.37611 * 120.25212 * 180.02562 * 11 10 7 13 13 C 1.40717 * 119.74429 * 359.97438 * 12 11 10 14 14 C 1.41393 * 120.24544 * 180.02562 * 13 12 11 15 15 H 1.07995 * 120.00167 * 334.84990 * 14 13 12 16 16 C 1.39947 * 120.00447 * 154.85088 * 14 13 12 17 17 N 1.30829 * 119.99580 * 334.27844 * 16 14 13 18 18 Si 1.86794 * 120.00413 * 154.27772 * 16 14 13 19 19 H 1.48504 * 109.47556 * 180.02562 * 18 16 14 20 20 H 1.48495 * 109.47307 * 60.00117 * 18 16 14 21 21 H 1.48499 * 109.47060 * 300.00218 * 18 16 14 22 22 C 1.40717 * 119.51251 * 0.27207 * 13 12 11 23 23 C 1.37622 * 119.74258 * 359.45159 * 22 13 12 24 24 C 1.47149 * 118.03468 * 50.22852 * 6 5 3 25 25 H 1.09000 * 109.68122 * 189.95635 * 24 6 5 26 26 C 1.53003 * 109.68460 * 69.43918 * 24 6 5 27 27 C 1.53298 * 108.38450 * 309.71575 * 24 6 5 28 28 O 1.42958 * 109.51283 * 64.99821 * 3 2 1 29 29 H 1.09003 * 109.46728 * 60.00104 * 1 2 3 30 30 H 1.08994 * 109.47253 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47108 * 300.00382 * 1 2 3 32 32 H 1.09003 * 109.47108 * 239.99618 * 2 1 3 33 33 H 1.09003 * 109.46728 * 119.99896 * 2 1 3 34 34 H 1.08997 * 109.61993 * 68.10075 * 5 3 2 35 35 H 1.09003 * 109.52580 * 307.68615 * 5 3 2 36 36 H 1.07997 * 119.87250 * 0.04365 * 11 10 7 37 37 H 1.07999 * 120.13162 * 179.97438 * 12 11 10 38 38 H 0.96996 * 120.00212 * 354.29995 * 17 16 14 39 39 H 1.07998 * 120.12873 * 179.72603 * 22 13 12 40 40 H 1.07997 * 119.87625 * 180.27232 * 23 22 13 41 41 H 1.09001 * 109.47100 * 59.99829 * 26 24 6 42 42 H 1.08993 * 109.47434 * 180.02562 * 26 24 6 43 43 H 1.09007 * 109.46744 * 300.00043 * 26 24 6 44 44 H 1.08997 * 109.51211 * 172.22460 * 27 24 6 45 45 H 1.09000 * 109.51229 * 292.37800 * 27 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6073 1.9816 -0.8426 5 6 3.5639 1.4471 -0.1225 6 7 4.0464 2.8238 0.0707 7 16 5.0887 3.5214 -1.0105 8 8 4.9191 4.9264 -0.8820 9 8 4.9176 2.8269 -2.2383 10 6 6.7248 3.1656 -0.4615 11 6 7.3629 2.0157 -0.9003 12 6 8.6404 1.7275 -0.4777 13 6 9.2993 2.6054 0.4028 14 6 10.6121 2.3199 0.8433 15 1 10.9655 1.2996 0.8622 16 6 11.4538 3.3595 1.2549 17 7 11.2723 4.5699 0.7927 18 14 12.8362 3.0190 2.4640 19 1 13.5763 4.2772 2.7372 20 1 13.7639 2.0143 1.8852 21 1 12.2673 2.4949 3.7316 22 6 8.6399 3.7670 0.8457 23 6 7.3645 4.0380 0.4055 24 6 3.5703 3.5643 1.2498 25 1 3.8638 4.6110 1.1690 26 6 4.1731 2.9566 2.5180 27 6 2.0419 3.4584 1.3027 28 8 1.6624 2.0825 1.2212 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8526 1.0924 -1.1120 35 1 3.9928 0.7973 0.6404 36 1 6.8556 1.3437 -1.5766 37 1 9.1355 0.8309 -0.8204 38 1 10.6091 4.7316 0.1036 39 1 9.1346 4.4454 1.5250 40 1 6.8581 4.9311 0.7407 41 1 5.2604 3.0165 2.4683 42 1 3.8180 3.5073 3.3890 43 1 3.8701 1.9128 2.6002 44 1 1.6799 3.8811 2.2398 45 1 1.6099 4.0055 0.4647 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000403809776.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:54 Heat of formation + Delta-G solvation = -138.391527 kcal Electronic energy + Delta-G solvation = -28433.437821 eV Core-core repulsion = 24540.987048 eV Total energy + Delta-G solvation = -3892.450773 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.69784 -39.67559 -38.36723 -36.93091 -36.33946 -36.06660 -35.03119 -32.17799 -31.98508 -31.36093 -28.89427 -27.53696 -27.11378 -24.92851 -23.39342 -23.21978 -22.66811 -21.41128 -20.08260 -19.78061 -18.97121 -18.35034 -17.75629 -17.00577 -16.63327 -16.37159 -16.24245 -15.93987 -15.73995 -15.44775 -15.12738 -14.95950 -14.60927 -14.37541 -14.29286 -14.09176 -13.72047 -13.66452 -13.41041 -13.35461 -13.27842 -13.13800 -12.96549 -12.84731 -12.80263 -12.41228 -12.18722 -12.09477 -11.98479 -11.93773 -11.82263 -11.79474 -11.44357 -11.26266 -11.09412 -11.07671 -10.05012 -9.84206 -9.75811 -9.41836 -6.81372 -0.50580 0.35733 0.83769 1.47236 1.52763 1.77251 1.99224 2.22838 2.43704 2.76676 2.79765 3.28364 3.28961 3.67749 3.72554 3.94347 4.04641 4.08926 4.11674 4.14539 4.21777 4.27095 4.48513 4.56055 4.58996 4.63102 4.68937 4.73456 4.77761 4.84419 4.90081 4.99230 5.00021 5.14700 5.18321 5.19729 5.25514 5.36419 5.39141 5.47424 5.48277 5.52430 5.60219 5.63103 5.96455 6.14506 6.19791 6.52887 6.65196 7.75789 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.018983 B = 0.003162 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.667760 B = 8854.253776 C = 8981.960405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 C 0.081 3.919 4 H 0.060 0.940 5 C 0.084 3.916 6 N -0.996 5.996 7 S 2.717 3.283 8 O -0.998 6.998 9 O -0.995 6.995 10 C -0.803 4.803 11 C 0.005 3.995 12 C -0.254 4.254 13 C 0.095 3.905 14 C -0.513 4.513 15 H 0.090 0.910 16 C 0.003 3.997 17 N -0.788 5.788 18 Si 1.120 2.880 19 H -0.270 1.270 20 H -0.252 1.252 21 H -0.259 1.259 22 C -0.253 4.253 23 C 0.003 3.997 24 C 0.103 3.897 25 H 0.102 0.898 26 C -0.154 4.154 27 C 0.061 3.939 28 O -0.374 6.374 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.127 0.873 37 H 0.111 0.889 38 H 0.289 0.711 39 H 0.098 0.902 40 H 0.117 0.883 41 H 0.040 0.960 42 H 0.088 0.912 43 H 0.065 0.935 44 H 0.132 0.868 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.350 -6.155 3.737 16.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.152 4.152 3 C 0.022 3.978 4 H 0.078 0.922 5 C -0.041 4.041 6 N -0.834 5.834 7 S 2.815 3.185 8 O -0.989 6.989 9 O -0.985 6.985 10 C -0.895 4.895 11 C -0.015 4.015 12 C -0.274 4.274 13 C 0.091 3.909 14 C -0.539 4.539 15 H 0.108 0.892 16 C -0.217 4.217 17 N -0.409 5.409 18 Si 0.935 3.065 19 H -0.194 1.194 20 H -0.176 1.176 21 H -0.183 1.183 22 C -0.273 4.273 23 C -0.017 4.017 24 C -0.002 4.002 25 H 0.120 0.880 26 C -0.212 4.212 27 C -0.018 4.018 28 O -0.293 6.293 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.117 0.883 35 H 0.100 0.900 36 H 0.144 0.856 37 H 0.129 0.871 38 H 0.102 0.898 39 H 0.116 0.884 40 H 0.135 0.865 41 H 0.059 0.941 42 H 0.107 0.893 43 H 0.084 0.916 44 H 0.150 0.850 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.523 -4.969 3.928 15.844 hybrid contribution -0.155 -0.521 -0.972 1.114 sum -14.678 -5.490 2.956 15.948 Atomic orbital electron populations 1.21669 0.94355 1.02260 1.01924 1.21560 0.97405 0.92388 1.03847 1.22472 0.91990 0.95874 0.87469 0.92162 1.22235 0.96229 0.81911 1.03765 1.57853 1.61038 1.24502 1.40010 1.00580 0.73050 0.72198 0.72667 1.93445 1.86895 1.31517 1.87006 1.93442 1.86860 1.75469 1.42766 1.29699 1.24735 1.09729 1.25374 1.20455 0.94020 0.93219 0.93785 1.21199 0.97496 1.03571 1.05178 1.18196 0.93481 0.91430 0.87799 1.21206 0.97726 0.98216 1.36722 0.89158 1.28762 1.03343 0.90821 0.98773 1.70572 1.28085 1.23298 1.18932 0.82976 0.71958 0.77627 0.73950 1.19445 1.17600 1.18349 1.21183 0.96656 1.02119 1.07329 1.20367 0.94101 0.95253 0.91954 1.21920 0.96719 0.96584 0.85008 0.88017 1.22026 1.00149 1.02404 0.96663 1.23025 0.91354 0.83188 1.04215 1.87912 1.79147 1.23983 1.38248 0.92822 0.91428 0.92730 0.89046 0.90603 0.88288 0.89997 0.85554 0.87053 0.89849 0.88376 0.86541 0.94066 0.89312 0.91590 0.85014 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.81 71.98 0.71 -1.39 16 2 C -0.11 -1.85 5.64 30.59 0.17 -1.68 16 3 C 0.08 1.72 2.76 30.55 0.08 1.80 16 4 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 5 C 0.08 2.09 5.58 86.21 0.48 2.57 16 6 N -1.00 -29.35 3.04 -490.12 -1.49 -30.84 16 7 S 2.72 102.45 5.74 -56.49 -0.32 102.12 16 8 O -1.00 -41.42 15.88 -128.00 -2.03 -43.45 16 9 O -0.99 -40.27 15.87 -128.00 -2.03 -42.30 16 10 C -0.80 -34.78 6.00 22.46 0.13 -34.64 16 11 C 0.00 0.22 9.49 22.22 0.21 0.43 16 12 C -0.25 -12.05 9.80 22.73 0.22 -11.83 16 13 C 0.09 4.85 5.30 -21.29 -0.11 4.74 16 14 C -0.51 -25.62 8.98 23.46 0.21 -25.41 16 15 H 0.09 4.27 7.96 -2.91 -0.02 4.25 16 16 C 0.00 0.13 4.93 85.26 0.42 0.55 16 17 N -0.79 -40.25 12.32 21.83 0.27 -39.98 16 18 Si 1.12 39.06 30.00 68.60 2.06 41.12 16 19 H -0.27 -9.36 7.11 99.48 0.71 -8.66 16 20 H -0.25 -7.96 7.11 99.48 0.71 -7.25 16 21 H -0.26 -8.51 7.11 99.48 0.71 -7.80 16 22 C -0.25 -12.74 7.96 22.73 0.18 -12.56 16 23 C 0.00 0.15 9.49 22.22 0.21 0.36 16 24 C 0.10 2.62 3.30 44.97 0.15 2.77 16 25 H 0.10 2.70 6.95 -2.39 -0.02 2.68 16 26 C -0.15 -3.70 9.25 71.98 0.67 -3.03 16 27 C 0.06 1.22 6.36 72.08 0.46 1.68 16 28 O -0.37 -8.12 9.55 -148.98 -1.42 -9.54 16 29 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 0.88 7.82 -2.39 -0.02 0.86 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.10 2.49 6.94 -2.39 -0.02 2.47 16 35 H 0.08 1.93 7.68 -2.39 -0.02 1.91 16 36 H 0.13 4.87 7.60 -2.91 -0.02 4.85 16 37 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 38 H 0.29 15.54 6.70 -92.71 -0.62 14.92 16 39 H 0.10 5.08 6.50 -2.91 -0.02 5.06 16 40 H 0.12 4.94 7.60 -2.91 -0.02 4.92 16 41 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.07 1.56 7.24 -2.38 -0.02 1.54 16 44 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -63.17 372.71 0.35 -62.82 By element: Atomic # 1 Polarization: 34.56 SS G_CDS: 1.13 Total: 35.69 kcal Atomic # 6 Polarization: -79.84 SS G_CDS: 4.20 Total: -75.64 kcal Atomic # 7 Polarization: -69.60 SS G_CDS: -1.22 Total: -70.82 kcal Atomic # 8 Polarization: -89.80 SS G_CDS: -5.49 Total: -95.29 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 2.06 Total: 41.12 kcal Atomic # 16 Polarization: 102.45 SS G_CDS: -0.32 Total: 102.12 kcal Total: -63.17 0.35 -62.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000403809776.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.570 kcal (2) G-P(sol) polarization free energy of solvation -63.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds