Wall clock time and date at job start Tue Mar 31 2020 23:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 110.81104 * 2 1 4 4 C 1.54706 * 110.75359 * 236.68048 * 2 1 3 5 5 C 1.51638 * 101.95770 * 266.97968 * 4 2 1 6 6 C 1.37741 * 132.17247 * 164.55301 * 5 4 2 7 7 C 1.38348 * 119.98295 * 180.37432 * 6 5 4 8 8 S 1.76196 * 120.11882 * 180.02562 * 7 6 5 9 9 O 1.42106 * 106.40290 * 203.54360 * 8 7 6 10 10 O 1.42094 * 106.40314 * 336.46395 * 8 7 6 11 11 N 1.65594 * 107.21833 * 90.00612 * 8 7 6 12 12 C 1.46506 * 120.00253 * 65.00137 * 11 8 7 13 13 C 1.52995 * 109.47116 * 165.00258 * 12 11 8 14 14 C 1.52999 * 109.47204 * 299.99688 * 13 12 11 15 15 C 1.53003 * 109.47659 * 59.99860 * 13 12 11 16 16 C 1.50703 * 109.47192 * 179.97438 * 13 12 11 17 17 H 1.08005 * 119.99776 * 359.97438 * 16 13 12 18 18 C 1.37877 * 120.00549 * 179.97438 * 16 13 12 19 19 N 1.31520 * 119.99423 * 359.97438 * 18 16 13 20 20 Si 1.86795 * 120.00361 * 179.97438 * 18 16 13 21 21 H 1.48505 * 109.47091 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47057 * 119.99694 * 20 18 16 23 23 H 1.48496 * 109.47239 * 240.00044 * 20 18 16 24 24 C 1.38293 * 119.76643 * 0.02562 * 7 6 5 25 25 C 1.37938 * 120.34482 * 359.80408 * 24 7 6 26 26 C 1.38884 * 107.04617 * 344.59228 * 5 4 2 27 27 O 1.36143 * 111.22994 * 358.93186 * 26 5 4 28 28 H 1.08996 * 109.46697 * 183.31801 * 1 2 3 29 29 H 1.08998 * 109.47202 * 303.32206 * 1 2 3 30 30 H 1.08999 * 109.46853 * 63.32306 * 1 2 3 31 31 H 1.09002 * 110.94176 * 148.80223 * 4 2 1 32 32 H 1.08997 * 110.93460 * 25.15134 * 4 2 1 33 33 H 1.07999 * 120.00875 * 0.35923 * 6 5 4 34 34 H 0.96999 * 120.00352 * 244.99917 * 11 8 7 35 35 H 1.09004 * 109.46322 * 284.99937 * 12 11 8 36 36 H 1.08993 * 109.47516 * 44.99547 * 12 11 8 37 37 H 1.08991 * 109.47325 * 59.99996 * 14 13 12 38 38 H 1.09005 * 109.47059 * 180.02562 * 14 13 12 39 39 H 1.09003 * 109.47049 * 300.00267 * 14 13 12 40 40 H 1.09007 * 109.47049 * 59.99709 * 15 13 12 41 41 H 1.08996 * 109.47256 * 180.02562 * 15 13 12 42 42 H 1.09001 * 109.46728 * 299.99797 * 15 13 12 43 43 H 0.96999 * 119.99360 * 179.97438 * 19 18 16 44 44 H 1.07991 * 119.82735 * 179.83065 * 24 7 6 45 45 H 1.08008 * 119.87281 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9173 1.0189 0.0000 4 6 2.0782 -0.7947 -1.2089 5 6 2.2627 -2.1787 -0.6175 6 6 2.4523 -3.4140 -1.1965 7 6 2.5869 -4.5375 -0.4004 8 16 2.8303 -6.1193 -1.1373 9 8 2.3872 -7.0776 -0.1862 10 8 2.3064 -6.0329 -2.4554 11 7 4.4637 -6.3397 -1.2969 12 6 5.3098 -6.4360 -0.1047 13 6 6.6774 -7.0007 -0.4942 14 6 6.4993 -8.3913 -1.1068 15 6 7.3396 -6.0743 -1.5161 16 6 7.5480 -7.0992 0.7320 17 1 7.1643 -6.7895 1.6929 18 6 8.8342 -7.5846 0.6272 19 7 9.3012 -7.9621 -0.5429 20 14 9.9135 -7.7059 2.1470 21 1 9.1581 -7.2220 3.3305 22 1 10.3120 -9.1206 2.3594 23 1 11.1279 -6.8722 1.9595 24 6 2.5298 -4.4145 0.9758 25 6 2.3435 -3.1779 1.5579 26 6 2.2109 -2.0416 0.7636 27 8 2.0401 -0.7398 1.1237 28 1 -0.3632 -1.0259 0.0595 29 1 -0.3633 0.5645 0.8587 30 1 -0.3633 0.4614 -0.9183 31 1 3.0306 -0.3846 -1.5451 32 1 1.3545 -0.8125 -2.0237 33 1 2.4956 -3.5056 -2.2718 34 1 4.8604 -6.4051 -2.1796 35 1 5.4367 -5.4452 0.3316 36 1 4.8382 -7.0959 0.6233 37 1 5.8698 -8.3198 -1.9936 38 1 7.4736 -8.7938 -1.3838 39 1 6.0275 -9.0513 -0.3787 40 1 7.4665 -5.0835 -1.0797 41 1 8.3137 -6.4769 -1.7939 42 1 6.7101 -6.0028 -2.4031 43 1 10.2062 -8.3033 -0.6166 44 1 2.6320 -5.2912 1.5981 45 1 2.3005 -3.0907 2.6336 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416534911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:53 Heat of formation + Delta-G solvation = -87.774654 kcal Electronic energy + Delta-G solvation = -27889.288885 eV Core-core repulsion = 23999.033025 eV Total energy + Delta-G solvation = -3890.255860 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.55605 -37.81773 -37.08352 -36.73987 -35.56594 -33.51710 -33.20342 -31.21667 -30.57087 -30.47853 -27.19695 -25.67887 -25.52591 -24.50208 -23.45364 -22.24126 -21.93960 -19.26169 -18.86713 -17.78755 -17.53230 -17.07656 -16.74747 -16.30379 -15.75110 -15.41760 -14.83049 -14.51814 -14.37234 -14.08878 -13.81710 -13.55770 -13.41962 -13.18683 -13.10359 -12.99995 -12.67681 -12.52180 -12.23272 -11.86627 -11.82574 -11.71289 -11.63274 -11.49186 -11.33415 -11.15245 -11.10034 -10.94596 -10.78415 -10.63161 -10.38841 -10.16268 -9.64326 -9.32915 -9.16836 -8.83605 -8.75010 -8.66110 -8.36412 -6.00715 -4.11333 0.57803 0.85040 1.09082 2.80937 3.17410 3.27229 3.36068 3.39235 3.50917 3.99844 4.02852 4.14148 4.39646 4.44094 4.55938 4.62308 4.78331 4.88850 5.04920 5.12578 5.25211 5.26067 5.35083 5.40714 5.45371 5.66394 5.71311 5.79899 5.82799 5.96383 6.04675 6.20903 6.29661 6.46755 6.51251 6.78098 6.83935 6.92766 7.02287 7.08125 7.36625 7.53843 7.60869 7.71562 8.05177 8.16793 8.40818 8.89237 9.54472 11.00467 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014321 B = 0.003273 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.748271 B = 8553.942856 C = 9532.613004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.075 3.925 3 H 0.119 0.881 4 C -0.105 4.105 5 C -0.199 4.199 6 C 0.031 3.969 7 C -0.700 4.700 8 S 2.696 3.304 9 O -0.960 6.960 10 O -0.973 6.973 11 N -1.106 6.106 12 C 0.127 3.873 13 C 0.064 3.936 14 C -0.133 4.133 15 C -0.132 4.132 16 C -0.507 4.507 17 H 0.058 0.942 18 C 0.066 3.934 19 N -0.884 5.884 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 C 0.019 3.981 25 C -0.159 4.159 26 C 0.157 3.843 27 O -0.296 6.296 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.141 0.859 34 H 0.417 0.583 35 H 0.051 0.949 36 H 0.068 0.932 37 H 0.010 0.990 38 H 0.084 0.916 39 H 0.028 0.972 40 H 0.026 0.974 41 H 0.085 0.915 42 H 0.008 0.992 43 H 0.259 0.741 44 H 0.151 0.849 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.852 14.503 -1.286 20.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.019 3.981 3 H 0.137 0.863 4 C -0.142 4.142 5 C -0.201 4.201 6 C 0.012 3.988 7 C -0.786 4.786 8 S 2.785 3.215 9 O -0.950 6.950 10 O -0.963 6.963 11 N -0.869 5.869 12 C 0.002 3.998 13 C 0.062 3.938 14 C -0.191 4.191 15 C -0.190 4.190 16 C -0.546 4.546 17 H 0.076 0.924 18 C -0.135 4.135 19 N -0.523 5.523 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.212 1.212 24 C 0.000 4.000 25 C -0.178 4.178 26 C 0.111 3.889 27 O -0.210 6.210 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.159 0.841 34 H 0.254 0.746 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.029 0.971 38 H 0.103 0.897 39 H 0.047 0.953 40 H 0.045 0.955 41 H 0.104 0.896 42 H 0.027 0.973 43 H 0.069 0.931 44 H 0.169 0.831 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -15.394 14.005 -1.199 20.846 hybrid contribution 1.058 0.732 0.653 1.443 sum -14.336 14.737 -0.546 20.567 Atomic orbital electron populations 1.22262 0.93910 1.03490 1.03273 1.23534 0.94921 0.96481 0.83172 0.86310 1.21879 1.03050 0.90882 0.98423 1.20777 1.09687 0.95585 0.94005 1.19972 0.89757 0.89221 0.99838 1.31054 1.20776 1.22555 1.04214 1.01715 0.72910 0.73689 0.73209 1.93573 1.80290 1.57301 1.63832 1.93543 1.78152 1.87306 1.37340 1.55454 1.26058 1.89029 1.16367 1.21676 0.93767 0.99962 0.84388 1.18257 0.88275 0.92222 0.95052 1.21826 1.01767 0.98524 0.96937 1.21835 1.02617 0.98280 0.96221 1.21056 0.97490 1.42665 0.93420 0.92367 1.24887 0.97768 0.95021 0.95858 1.69827 1.16540 1.43246 1.22661 0.86540 0.80444 0.77657 0.83347 1.19780 1.21075 1.21150 1.20735 0.89031 0.97476 0.92789 1.20378 1.07944 0.89255 1.00268 1.19834 0.91204 0.84897 0.92995 1.86936 1.79170 1.16499 1.38378 0.91700 0.91212 0.90391 0.88714 0.88618 0.84111 0.74631 0.93072 0.91387 0.97072 0.89750 0.95305 0.95492 0.89611 0.97271 0.93076 0.83136 0.84460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 9.51 37.16 0.35 -0.77 16 2 C 0.07 0.58 4.32 -25.83 -0.11 0.47 16 3 H 0.12 0.66 8.14 -51.93 -0.42 0.23 16 4 C -0.11 -0.87 6.65 -26.52 -0.18 -1.05 16 5 C -0.20 -2.36 6.26 -104.10 -0.65 -3.02 16 6 C 0.03 0.41 9.51 -39.72 -0.38 0.03 16 7 C -0.70 -9.93 5.95 -39.52 -0.24 -10.16 16 8 S 2.70 43.00 5.74 -107.50 -0.62 42.38 16 9 O -0.96 -17.66 16.76 -57.17 -0.96 -18.61 16 10 O -0.97 -16.84 17.30 -57.17 -0.99 -17.82 16 11 N -1.11 -18.56 5.33 -10.61 -0.06 -18.62 16 12 C 0.13 2.45 5.05 -4.04 -0.02 2.43 16 13 C 0.06 1.45 0.51 -155.66 -0.08 1.37 16 14 C -0.13 -3.05 8.08 37.16 0.30 -2.75 16 15 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 16 C -0.51 -12.92 8.01 -34.44 -0.28 -13.20 16 17 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 18 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 19 N -0.88 -23.44 9.35 55.43 0.52 -22.93 16 20 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 24 C 0.02 0.25 9.50 -39.67 -0.38 -0.12 16 25 C -0.16 -1.98 10.06 -39.31 -0.40 -2.38 16 26 C 0.16 1.97 6.91 -38.96 -0.27 1.70 16 27 O -0.30 -3.39 10.82 -20.19 -0.22 -3.61 16 28 H 0.06 0.52 8.07 -51.93 -0.42 0.10 16 29 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.10 0.62 7.92 -51.93 -0.41 0.21 16 33 H 0.14 1.62 7.63 -52.49 -0.40 1.22 16 34 H 0.42 6.70 6.47 -34.47 -0.22 6.47 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.07 1.32 7.75 -51.93 -0.40 0.92 16 37 H 0.01 0.21 7.19 -51.93 -0.37 -0.16 16 38 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 2.12 6.07 -51.93 -0.32 1.80 16 42 H 0.01 0.16 6.60 -51.93 -0.34 -0.18 16 43 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 44 H 0.15 1.86 7.62 -52.49 -0.40 1.46 16 45 H 0.14 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 372.24 15.07 5.61 5.61 Total: -1.00 -31.03 372.24 -10.37 -41.40 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -6.53 Total: 5.25 kcal Atomic # 6 Polarization: -26.33 SS G_CDS: -2.11 Total: -28.44 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.46 Total: -41.54 kcal Atomic # 8 Polarization: -37.89 SS G_CDS: -2.17 Total: -40.05 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: 43.00 SS G_CDS: -0.62 Total: 42.38 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.03 -10.37 -41.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416534911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.376 kcal (2) G-P(sol) polarization free energy of solvation -31.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds