Wall clock time and date at job start Tue Mar 31 2020 23:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 110.81104 * 2 1 4 4 C 1.54706 * 110.75359 * 236.68048 * 2 1 3 5 5 C 1.51638 * 101.95770 * 266.97968 * 4 2 1 6 6 C 1.37741 * 132.17247 * 164.55301 * 5 4 2 7 7 C 1.38348 * 119.98295 * 180.37432 * 6 5 4 8 8 S 1.76196 * 120.11882 * 180.02562 * 7 6 5 9 9 O 1.42106 * 106.40290 * 203.54360 * 8 7 6 10 10 O 1.42094 * 106.40314 * 336.46395 * 8 7 6 11 11 N 1.65594 * 107.21833 * 90.00612 * 8 7 6 12 12 C 1.46506 * 120.00253 * 65.00137 * 11 8 7 13 13 C 1.52995 * 109.47116 * 165.00258 * 12 11 8 14 14 C 1.52999 * 109.47204 * 299.99688 * 13 12 11 15 15 C 1.53003 * 109.47659 * 59.99860 * 13 12 11 16 16 C 1.50703 * 109.47192 * 179.97438 * 13 12 11 17 17 H 1.08005 * 119.99776 * 359.97438 * 16 13 12 18 18 C 1.37877 * 120.00549 * 179.97438 * 16 13 12 19 19 N 1.31520 * 119.99423 * 359.97438 * 18 16 13 20 20 Si 1.86795 * 120.00361 * 179.97438 * 18 16 13 21 21 H 1.48505 * 109.47091 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47057 * 119.99694 * 20 18 16 23 23 H 1.48496 * 109.47239 * 240.00044 * 20 18 16 24 24 C 1.38293 * 119.76643 * 0.02562 * 7 6 5 25 25 C 1.37938 * 120.34482 * 359.80408 * 24 7 6 26 26 C 1.38884 * 107.04617 * 344.59228 * 5 4 2 27 27 O 1.36143 * 111.22994 * 358.93186 * 26 5 4 28 28 H 1.08996 * 109.46697 * 183.31801 * 1 2 3 29 29 H 1.08998 * 109.47202 * 303.32206 * 1 2 3 30 30 H 1.08999 * 109.46853 * 63.32306 * 1 2 3 31 31 H 1.09002 * 110.94176 * 148.80223 * 4 2 1 32 32 H 1.08997 * 110.93460 * 25.15134 * 4 2 1 33 33 H 1.07999 * 120.00875 * 0.35923 * 6 5 4 34 34 H 0.96999 * 120.00352 * 244.99917 * 11 8 7 35 35 H 1.09004 * 109.46322 * 284.99937 * 12 11 8 36 36 H 1.08993 * 109.47516 * 44.99547 * 12 11 8 37 37 H 1.08991 * 109.47325 * 59.99996 * 14 13 12 38 38 H 1.09005 * 109.47059 * 180.02562 * 14 13 12 39 39 H 1.09003 * 109.47049 * 300.00267 * 14 13 12 40 40 H 1.09007 * 109.47049 * 59.99709 * 15 13 12 41 41 H 1.08996 * 109.47256 * 180.02562 * 15 13 12 42 42 H 1.09001 * 109.46728 * 299.99797 * 15 13 12 43 43 H 0.96999 * 119.99360 * 179.97438 * 19 18 16 44 44 H 1.07991 * 119.82735 * 179.83065 * 24 7 6 45 45 H 1.08008 * 119.87281 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9173 1.0189 0.0000 4 6 2.0782 -0.7947 -1.2089 5 6 2.2627 -2.1787 -0.6175 6 6 2.4523 -3.4140 -1.1965 7 6 2.5869 -4.5375 -0.4004 8 16 2.8303 -6.1193 -1.1373 9 8 2.3872 -7.0776 -0.1862 10 8 2.3064 -6.0329 -2.4554 11 7 4.4637 -6.3397 -1.2969 12 6 5.3098 -6.4360 -0.1047 13 6 6.6774 -7.0007 -0.4942 14 6 6.4993 -8.3913 -1.1068 15 6 7.3396 -6.0743 -1.5161 16 6 7.5480 -7.0992 0.7320 17 1 7.1643 -6.7895 1.6929 18 6 8.8342 -7.5846 0.6272 19 7 9.3012 -7.9621 -0.5429 20 14 9.9135 -7.7059 2.1470 21 1 9.1581 -7.2220 3.3305 22 1 10.3120 -9.1206 2.3594 23 1 11.1279 -6.8722 1.9595 24 6 2.5298 -4.4145 0.9758 25 6 2.3435 -3.1779 1.5579 26 6 2.2109 -2.0416 0.7636 27 8 2.0401 -0.7398 1.1237 28 1 -0.3632 -1.0259 0.0595 29 1 -0.3633 0.5645 0.8587 30 1 -0.3633 0.4614 -0.9183 31 1 3.0306 -0.3846 -1.5451 32 1 1.3545 -0.8125 -2.0237 33 1 2.4956 -3.5056 -2.2718 34 1 4.8604 -6.4051 -2.1796 35 1 5.4367 -5.4452 0.3316 36 1 4.8382 -7.0959 0.6233 37 1 5.8698 -8.3198 -1.9936 38 1 7.4736 -8.7938 -1.3838 39 1 6.0275 -9.0513 -0.3787 40 1 7.4665 -5.0835 -1.0797 41 1 8.3137 -6.4769 -1.7939 42 1 6.7101 -6.0028 -2.4031 43 1 10.2062 -8.3033 -0.6166 44 1 2.6320 -5.2912 1.5981 45 1 2.3005 -3.0907 2.6336 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416534911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:52 Heat of formation + Delta-G solvation = -107.343733 kcal Electronic energy + Delta-G solvation = -27890.137464 eV Core-core repulsion = 23999.033025 eV Total energy + Delta-G solvation = -3891.104439 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.37121 -38.76612 -38.61218 -38.21821 -36.93047 -34.91032 -34.25209 -32.31800 -31.98287 -31.47574 -27.88671 -27.49279 -27.36397 -26.22039 -24.39268 -23.15027 -22.63309 -20.75276 -20.42501 -18.98224 -18.52727 -18.24965 -17.66487 -17.60420 -17.14326 -16.77862 -16.46428 -15.68673 -15.31748 -15.13577 -15.08642 -14.86126 -14.68053 -14.28480 -14.14661 -14.01687 -13.89072 -13.37685 -13.30297 -13.27306 -13.19916 -13.11342 -13.09639 -12.89469 -12.73452 -12.46100 -12.34263 -12.24874 -12.08544 -12.03881 -11.95350 -11.91501 -11.43812 -11.08510 -10.63221 -10.39655 -10.21311 -10.10020 -9.57297 -7.96534 -6.12349 -0.60408 -0.24638 0.14587 1.44493 1.49081 1.57563 1.93914 2.15216 2.36481 2.50343 2.79104 3.18282 3.27466 3.41054 3.55900 3.74817 3.89411 4.04259 4.10790 4.22215 4.27493 4.37729 4.55467 4.60430 4.71153 4.74705 4.78501 4.79723 4.83883 4.91212 4.97691 5.01053 5.11909 5.12465 5.15835 5.19415 5.27543 5.29205 5.39555 5.55259 5.73628 5.74008 5.97580 6.12657 6.22022 6.31378 6.49594 6.94906 7.55425 9.02483 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014321 B = 0.003273 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.748271 B = 8553.942856 C = 9532.613004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.069 3.931 3 H 0.147 0.853 4 C -0.104 4.104 5 C -0.202 4.202 6 C 0.020 3.980 7 C -0.708 4.708 8 S 2.715 3.285 9 O -0.988 6.988 10 O -0.986 6.986 11 N -1.106 6.106 12 C 0.138 3.862 13 C 0.054 3.946 14 C -0.127 4.127 15 C -0.124 4.124 16 C -0.523 4.523 17 H 0.055 0.945 18 C 0.024 3.976 19 N -0.903 5.903 20 Si 0.944 3.056 21 H -0.269 1.269 22 H -0.287 1.287 23 H -0.285 1.285 24 C 0.006 3.994 25 C -0.167 4.167 26 C 0.151 3.849 27 O -0.309 6.309 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.153 0.847 34 H 0.420 0.580 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.031 0.969 38 H 0.059 0.941 39 H 0.019 0.981 40 H 0.026 0.974 41 H 0.058 0.942 42 H 0.035 0.965 43 H 0.257 0.743 44 H 0.155 0.845 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.805 16.749 -1.379 23.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.014 3.986 3 H 0.164 0.836 4 C -0.141 4.141 5 C -0.204 4.204 6 C 0.001 3.999 7 C -0.797 4.797 8 S 2.807 3.193 9 O -0.978 6.978 10 O -0.977 6.977 11 N -0.868 5.868 12 C 0.012 3.988 13 C 0.052 3.948 14 C -0.185 4.185 15 C -0.182 4.182 16 C -0.562 4.562 17 H 0.073 0.927 18 C -0.175 4.175 19 N -0.542 5.542 20 Si 0.771 3.229 21 H -0.193 1.193 22 H -0.213 1.213 23 H -0.211 1.211 24 C -0.013 4.013 25 C -0.186 4.186 26 C 0.104 3.896 27 O -0.223 6.223 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.120 0.880 31 H 0.125 0.875 32 H 0.135 0.865 33 H 0.171 0.829 34 H 0.258 0.742 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.050 0.950 38 H 0.078 0.922 39 H 0.039 0.961 40 H 0.045 0.955 41 H 0.076 0.924 42 H 0.053 0.947 43 H 0.067 0.933 44 H 0.172 0.828 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -16.347 16.228 -1.311 23.071 hybrid contribution 1.286 0.147 0.684 1.464 sum -15.061 16.375 -0.627 22.257 Atomic orbital electron populations 1.22278 0.93005 1.02652 1.04766 1.23910 0.95728 0.97200 0.81766 0.83602 1.22041 1.04382 0.88550 0.99097 1.21164 1.08322 0.96734 0.94204 1.20176 0.89930 0.89359 1.00435 1.30651 1.22821 1.21568 1.04635 1.00894 0.72084 0.73820 0.72487 1.93533 1.80592 1.59252 1.64430 1.93518 1.78139 1.87788 1.38223 1.55326 1.26110 1.89552 1.15798 1.21378 0.92226 1.00150 0.85025 1.18293 0.89805 0.92328 0.94324 1.21730 1.00622 0.98576 0.97602 1.21693 1.01605 0.97748 0.97129 1.21408 0.98095 1.42319 0.94368 0.92676 1.25502 0.98964 0.95143 0.97936 1.69954 1.16581 1.43785 1.23892 0.85721 0.78974 0.77260 0.80910 1.19345 1.21315 1.21070 1.20867 0.89559 0.98207 0.92669 1.20592 1.07625 0.89080 1.01329 1.20059 0.90653 0.85458 0.93439 1.86929 1.79175 1.16005 1.40168 0.93523 0.90765 0.88029 0.87504 0.86529 0.82925 0.74243 0.92048 0.91889 0.94960 0.92220 0.96135 0.95515 0.92351 0.94660 0.93318 0.82780 0.82816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.74 9.51 71.98 0.68 -1.06 16 2 C 0.07 0.86 4.32 31.18 0.13 1.00 16 3 H 0.15 1.04 8.14 -2.39 -0.02 1.03 16 4 C -0.10 -1.40 6.65 30.73 0.20 -1.20 16 5 C -0.20 -4.41 6.26 -19.53 -0.12 -4.53 16 6 C 0.02 0.50 9.51 22.18 0.21 0.71 16 7 C -0.71 -19.49 5.95 22.31 0.13 -19.35 16 8 S 2.72 85.10 5.74 -56.49 -0.32 84.77 16 9 O -0.99 -36.30 16.76 -128.00 -2.15 -38.45 16 10 O -0.99 -33.29 17.30 -128.00 -2.21 -35.50 16 11 N -1.11 -36.14 5.33 -187.49 -1.00 -37.14 16 12 C 0.14 5.23 5.05 86.38 0.44 5.67 16 13 C 0.05 2.45 0.51 -52.93 -0.03 2.42 16 14 C -0.13 -5.87 8.08 71.98 0.58 -5.28 16 15 C -0.12 -5.41 8.08 71.98 0.58 -4.83 16 16 C -0.52 -26.66 8.01 25.60 0.21 -26.45 16 17 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 18 C 0.02 1.24 5.15 84.65 0.44 1.67 16 19 N -0.90 -48.45 9.35 21.45 0.20 -48.25 16 20 Si 0.94 41.97 29.54 68.60 2.03 44.00 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 24 C 0.01 0.16 9.50 22.21 0.21 0.38 16 25 C -0.17 -3.99 10.06 22.45 0.23 -3.77 16 26 C 0.15 3.54 6.91 22.67 0.16 3.70 16 27 O -0.31 -6.42 10.82 -95.18 -1.03 -7.45 16 28 H 0.05 0.66 8.07 -2.39 -0.02 0.64 16 29 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.12 1.09 7.92 -2.39 -0.02 1.07 16 33 H 0.15 3.25 7.63 -2.91 -0.02 3.23 16 34 H 0.42 12.98 6.47 -96.75 -0.63 12.36 16 35 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.06 2.44 7.75 -2.39 -0.02 2.42 16 37 H 0.03 1.29 7.19 -2.39 -0.02 1.28 16 38 H 0.06 3.05 6.07 -2.38 -0.01 3.03 16 39 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.06 2.89 6.07 -2.39 -0.01 2.87 16 42 H 0.03 1.31 6.60 -2.39 -0.02 1.29 16 43 H 0.26 13.34 8.31 -92.71 -0.77 12.57 16 44 H 0.15 3.79 7.62 -2.92 -0.02 3.77 16 45 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -65.86 372.24 -0.05 -65.91 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 0.38 Total: 23.04 kcal Atomic # 6 Polarization: -54.98 SS G_CDS: 4.05 Total: -50.93 kcal Atomic # 7 Polarization: -84.59 SS G_CDS: -0.80 Total: -85.39 kcal Atomic # 8 Polarization: -76.01 SS G_CDS: -5.39 Total: -81.40 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Atomic # 16 Polarization: 85.10 SS G_CDS: -0.32 Total: 84.77 kcal Total: -65.86 -0.05 -65.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416534911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.432 kcal (2) G-P(sol) polarization free energy of solvation -65.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds