Wall clock time and date at job start Tue Mar 31 2020 23:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 110.66693 * 2 1 4 4 C 1.54704 * 110.75025 * 123.41901 * 2 1 3 5 5 C 1.51646 * 101.94131 * 143.55137 * 4 2 1 6 6 C 1.37740 * 132.16924 * 164.39656 * 5 4 2 7 7 C 1.38348 * 119.97807 * 180.89990 * 6 5 4 8 8 S 1.76204 * 120.11630 * 180.02562 * 7 6 5 9 9 O 1.42101 * 106.40071 * 203.53883 * 8 7 6 10 10 O 1.42095 * 106.40177 * 336.45884 * 8 7 6 11 11 N 1.65603 * 107.21666 * 90.00118 * 8 7 6 12 12 C 1.46500 * 120.00065 * 64.99902 * 11 8 7 13 13 C 1.52995 * 109.47377 * 164.99941 * 12 11 8 14 14 C 1.52997 * 109.47161 * 300.00040 * 13 12 11 15 15 C 1.53000 * 109.46953 * 59.99781 * 13 12 11 16 16 C 1.50703 * 109.47404 * 180.02562 * 13 12 11 17 17 H 1.07992 * 119.99903 * 1.35717 * 16 13 12 18 18 C 1.37873 * 119.99808 * 181.35496 * 16 13 12 19 19 N 1.31521 * 119.99757 * 193.96430 * 18 16 13 20 20 Si 1.86803 * 120.00317 * 13.97146 * 18 16 13 21 21 H 1.48496 * 109.47138 * 84.54997 * 20 18 16 22 22 H 1.48501 * 109.47042 * 204.55122 * 20 18 16 23 23 H 1.48504 * 109.46635 * 324.54913 * 20 18 16 24 24 C 1.38286 * 119.77048 * 359.97438 * 7 6 5 25 25 C 1.37937 * 120.34585 * 359.81704 * 24 7 6 26 26 C 1.38874 * 107.04617 * 344.85670 * 5 4 2 27 27 O 1.36138 * 111.22245 * 358.56915 * 26 5 4 28 28 H 1.09000 * 109.46793 * 181.77318 * 1 2 3 29 29 H 1.08996 * 109.46746 * 301.76728 * 1 2 3 30 30 H 1.08996 * 109.46736 * 61.76926 * 1 2 3 31 31 H 1.09005 * 110.93549 * 25.38916 * 4 2 1 32 32 H 1.08999 * 110.93725 * 261.71177 * 4 2 1 33 33 H 1.08005 * 120.01469 * 0.61881 * 6 5 4 34 34 H 0.97000 * 119.99885 * 245.00238 * 11 8 7 35 35 H 1.09000 * 109.47144 * 285.00344 * 12 11 8 36 36 H 1.09003 * 109.47011 * 45.00030 * 12 11 8 37 37 H 1.09002 * 109.47008 * 69.33057 * 14 13 12 38 38 H 1.08999 * 109.47429 * 189.33002 * 14 13 12 39 39 H 1.08998 * 109.47585 * 309.33278 * 14 13 12 40 40 H 1.09004 * 109.47260 * 60.00571 * 15 13 12 41 41 H 1.09001 * 109.47029 * 179.97438 * 15 13 12 42 42 H 1.08998 * 109.47353 * 300.00559 * 15 13 12 43 43 H 0.96994 * 119.99619 * 180.02562 * 19 18 16 44 44 H 1.07994 * 119.82589 * 179.81137 * 24 7 6 45 45 H 1.07997 * 119.87961 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0782 -0.7968 1.2075 5 6 3.3054 -1.4612 0.6140 6 6 4.3940 -2.0767 1.1914 7 6 5.4000 -2.5925 0.3939 8 16 6.7939 -3.3811 1.1286 9 8 7.8486 -3.2971 0.1800 10 8 6.8945 -2.8687 2.4501 11 7 6.4256 -4.9888 1.2772 12 6 6.2206 -5.8071 0.0794 13 6 6.2678 -7.2883 0.4594 14 6 7.6311 -7.6144 1.0725 15 6 5.1658 -7.5890 1.4773 16 6 6.0575 -8.1301 -0.7728 17 1 5.9273 -7.6564 -1.7345 18 6 6.0314 -9.5049 -0.6723 19 7 6.1247 -10.2453 -1.7553 20 14 5.8634 -10.3160 1.0021 21 1 4.4275 -10.3944 1.3722 22 1 6.4363 -11.6850 0.9486 23 1 6.5930 -9.5133 2.0163 24 6 5.3072 -2.4879 -0.9819 25 6 4.2158 -1.8758 -1.5623 26 6 3.1973 -1.3567 -0.7665 27 8 2.0395 -0.7367 -1.1247 28 1 -0.3633 -1.0272 0.0318 29 1 -0.3633 0.5410 0.8737 30 1 -0.3633 0.4861 -0.9054 31 1 1.3561 -1.5412 1.5431 32 1 2.3534 -0.1279 2.0229 33 1 4.4645 -2.1525 2.2664 34 1 6.3456 -5.3887 2.1573 35 1 5.2494 -5.5748 -0.3575 36 1 7.0057 -5.5928 -0.6457 37 1 7.7155 -7.1335 2.0471 38 1 7.7278 -8.6937 1.1903 39 1 8.4213 -7.2482 0.4171 40 1 4.1944 -7.3568 1.0405 41 1 5.1991 -8.6444 1.7477 42 1 5.3183 -6.9802 2.3684 43 1 6.1059 -11.2125 -1.6845 44 1 6.0934 -2.8875 -1.6051 45 1 4.1509 -1.7987 -2.6375 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416534912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:57 Heat of formation + Delta-G solvation = -67.933110 kcal Electronic energy + Delta-G solvation = -27882.206035 eV Core-core repulsion = 23992.810568 eV Total energy + Delta-G solvation = -3889.395466 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.52552 -37.87178 -37.36895 -36.95277 -35.65735 -33.58507 -33.22326 -31.51432 -31.29507 -30.54521 -27.03427 -26.36533 -25.68875 -24.60580 -23.32939 -22.20210 -22.11560 -19.33388 -19.26983 -17.93011 -17.76961 -17.24601 -16.97199 -16.08194 -15.89093 -15.46371 -15.16789 -14.68173 -14.49171 -14.04261 -13.92898 -13.83356 -13.51500 -13.31577 -13.01388 -12.97038 -12.85056 -12.73319 -12.52002 -12.36638 -12.00577 -11.95877 -11.89715 -11.76603 -11.71942 -11.58314 -11.31870 -11.12702 -10.87218 -10.45197 -10.20508 -10.16136 -10.02839 -9.21682 -9.12905 -9.03121 -8.71214 -8.65706 -8.45623 -6.15251 -4.12524 0.50293 0.77875 1.04880 2.75069 3.10077 3.25250 3.33009 3.39689 3.41440 3.91190 3.98760 4.08382 4.36276 4.42851 4.53376 4.55473 4.75154 4.87387 5.00162 5.08534 5.16388 5.19204 5.26938 5.39969 5.45361 5.56431 5.60963 5.67628 5.78076 5.90665 5.96039 6.00450 6.04982 6.07216 6.26752 6.39783 6.48695 6.59323 6.67205 6.69781 6.80679 6.93002 7.19672 7.34360 7.46267 7.73945 8.43350 8.88736 9.49268 10.97689 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013939 B = 0.003353 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.239528 B = 8348.076912 C = 9211.978849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.074 3.926 3 H 0.090 0.910 4 C -0.105 4.105 5 C -0.201 4.201 6 C 0.031 3.969 7 C -0.702 4.702 8 S 2.698 3.302 9 O -0.957 6.957 10 O -0.972 6.972 11 N -1.111 6.111 12 C 0.137 3.863 13 C 0.036 3.964 14 C -0.143 4.143 15 C -0.149 4.149 16 C -0.515 4.515 17 H 0.077 0.923 18 C 0.076 3.924 19 N -0.891 5.891 20 Si 0.884 3.116 21 H -0.287 1.287 22 H -0.306 1.306 23 H -0.247 1.247 24 C 0.020 3.980 25 C -0.158 4.158 26 C 0.159 3.841 27 O -0.298 6.298 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.141 0.859 34 H 0.415 0.585 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.025 0.975 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.053 0.947 41 H 0.042 0.958 42 H 0.032 0.968 43 H 0.264 0.736 44 H 0.152 0.848 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.751 20.010 6.104 22.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.019 3.981 3 H 0.108 0.892 4 C -0.142 4.142 5 C -0.203 4.203 6 C 0.012 3.988 7 C -0.788 4.788 8 S 2.787 3.213 9 O -0.947 6.947 10 O -0.962 6.962 11 N -0.874 5.874 12 C 0.012 3.988 13 C 0.033 3.967 14 C -0.201 4.201 15 C -0.206 4.206 16 C -0.553 4.553 17 H 0.095 0.905 18 C -0.127 4.127 19 N -0.528 5.528 20 Si 0.716 3.284 21 H -0.214 1.214 22 H -0.234 1.234 23 H -0.173 1.173 24 C 0.001 3.999 25 C -0.177 4.177 26 C 0.112 3.888 27 O -0.211 6.211 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.159 0.841 34 H 0.252 0.748 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.044 0.956 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.060 0.940 42 H 0.051 0.949 43 H 0.074 0.926 44 H 0.170 0.830 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.105 20.343 5.847 22.665 hybrid contribution -1.081 -0.747 0.964 1.630 sum -9.185 19.596 6.812 22.688 Atomic orbital electron populations 1.21900 0.91737 1.03749 1.03348 1.23487 0.96084 0.95460 0.83111 0.89202 1.21889 0.94541 0.99362 0.98405 1.20799 0.98391 1.07012 0.94062 1.19966 0.89144 0.89894 0.99791 1.31004 1.22469 1.21082 1.04226 1.01674 0.73837 0.72587 0.73244 1.93584 1.51069 1.86175 1.63885 1.93549 1.86507 1.79043 1.37105 1.55519 1.89379 1.26365 1.16135 1.21492 1.00548 0.92497 0.84282 1.18617 0.91935 0.90788 0.95313 1.22287 0.98753 1.01163 0.97894 1.22366 1.00567 0.99534 0.98148 1.20743 1.50938 0.90641 0.92970 0.90498 1.24964 0.94104 0.97269 0.96335 1.69951 1.48814 1.05491 1.28524 0.87321 0.78087 0.77121 0.85845 1.21437 1.23439 1.17325 1.20751 0.95746 0.90660 0.92760 1.20393 0.92533 1.04424 1.00369 1.19829 0.85638 0.90282 0.93008 1.86893 1.34040 1.62050 1.38148 0.91211 0.90080 0.91117 0.88682 0.88709 0.84116 0.74837 0.92285 0.90514 0.95601 0.92688 0.93188 0.92822 0.94017 0.94937 0.92574 0.83005 0.84324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.60 37.16 0.36 -0.49 16 2 C 0.07 0.58 4.26 -25.83 -0.11 0.47 16 3 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.10 -0.85 6.65 -26.52 -0.18 -1.02 16 5 C -0.20 -2.32 6.27 -104.10 -0.65 -2.97 16 6 C 0.03 0.39 9.51 -39.72 -0.38 0.01 16 7 C -0.70 -9.46 5.95 -39.52 -0.24 -9.70 16 8 S 2.70 40.30 5.74 -107.50 -0.62 39.68 16 9 O -0.96 -16.76 16.76 -57.17 -0.96 -17.71 16 10 O -0.97 -15.82 17.29 -57.17 -0.99 -16.81 16 11 N -1.11 -17.02 5.43 -10.61 -0.06 -17.08 16 12 C 0.14 2.46 5.04 -4.04 -0.02 2.44 16 13 C 0.04 0.76 0.51 -155.66 -0.08 0.68 16 14 C -0.14 -2.97 7.54 37.16 0.28 -2.69 16 15 C -0.15 -2.95 7.52 37.16 0.28 -2.67 16 16 C -0.51 -13.41 8.62 -34.44 -0.30 -13.71 16 17 H 0.08 2.16 7.99 -52.49 -0.42 1.74 16 18 C 0.08 2.08 5.32 -17.82 -0.09 1.99 16 19 N -0.89 -26.27 13.96 55.43 0.77 -25.50 16 20 Si 0.88 20.97 22.79 -169.99 -3.87 17.10 16 21 H -0.29 -6.76 7.10 56.52 0.40 -6.36 16 22 H -0.31 -7.46 7.11 56.52 0.40 -7.06 16 23 H -0.25 -5.38 4.65 56.52 0.26 -5.12 16 24 C 0.02 0.26 9.50 -39.67 -0.38 -0.12 16 25 C -0.16 -1.92 10.06 -39.30 -0.40 -2.32 16 26 C 0.16 1.96 7.03 -38.96 -0.27 1.68 16 27 O -0.30 -3.39 10.81 -20.18 -0.22 -3.60 16 28 H 0.07 0.43 8.11 -51.93 -0.42 0.01 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.70 7.90 -51.93 -0.41 0.29 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.14 1.51 7.63 -52.48 -0.40 1.11 16 34 H 0.42 5.85 6.53 -34.47 -0.23 5.63 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.08 1.41 7.75 -51.93 -0.40 1.01 16 37 H 0.02 0.46 7.47 -51.93 -0.39 0.07 16 38 H 0.05 1.20 4.30 -51.93 -0.22 0.98 16 39 H 0.05 1.02 8.12 -51.93 -0.42 0.60 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.04 0.88 2.25 -51.93 -0.12 0.77 16 42 H 0.03 0.53 6.60 -51.93 -0.34 0.19 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.15 1.80 7.62 -52.49 -0.40 1.40 16 45 H 0.14 1.41 8.06 -52.49 -0.42 0.98 16 LS Contribution 362.52 15.07 5.46 5.46 Total: -1.00 -33.20 362.52 -9.06 -42.25 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -6.40 Total: 4.62 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: -2.17 Total: -28.42 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: 0.72 Total: -42.58 kcal Atomic # 8 Polarization: -35.96 SS G_CDS: -2.17 Total: -38.13 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -3.87 Total: 17.10 kcal Atomic # 16 Polarization: 40.30 SS G_CDS: -0.62 Total: 39.68 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.20 -9.06 -42.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416534912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.678 kcal (2) G-P(sol) polarization free energy of solvation -33.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds