Wall clock time and date at job start Tue Mar 31 2020 23:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 110.66693 * 2 1 4 4 C 1.54704 * 110.75025 * 123.41901 * 2 1 3 5 5 C 1.51646 * 101.94131 * 143.55137 * 4 2 1 6 6 C 1.37740 * 132.16924 * 164.39656 * 5 4 2 7 7 C 1.38348 * 119.97807 * 180.89990 * 6 5 4 8 8 S 1.76204 * 120.11630 * 180.02562 * 7 6 5 9 9 O 1.42101 * 106.40071 * 203.53883 * 8 7 6 10 10 O 1.42095 * 106.40177 * 336.45884 * 8 7 6 11 11 N 1.65603 * 107.21666 * 90.00118 * 8 7 6 12 12 C 1.46500 * 120.00065 * 64.99902 * 11 8 7 13 13 C 1.52995 * 109.47377 * 164.99941 * 12 11 8 14 14 C 1.52997 * 109.47161 * 300.00040 * 13 12 11 15 15 C 1.53000 * 109.46953 * 59.99781 * 13 12 11 16 16 C 1.50703 * 109.47404 * 180.02562 * 13 12 11 17 17 H 1.07992 * 119.99903 * 1.35717 * 16 13 12 18 18 C 1.37873 * 119.99808 * 181.35496 * 16 13 12 19 19 N 1.31521 * 119.99757 * 193.96430 * 18 16 13 20 20 Si 1.86803 * 120.00317 * 13.97146 * 18 16 13 21 21 H 1.48496 * 109.47138 * 84.54997 * 20 18 16 22 22 H 1.48501 * 109.47042 * 204.55122 * 20 18 16 23 23 H 1.48504 * 109.46635 * 324.54913 * 20 18 16 24 24 C 1.38286 * 119.77048 * 359.97438 * 7 6 5 25 25 C 1.37937 * 120.34585 * 359.81704 * 24 7 6 26 26 C 1.38874 * 107.04617 * 344.85670 * 5 4 2 27 27 O 1.36138 * 111.22245 * 358.56915 * 26 5 4 28 28 H 1.09000 * 109.46793 * 181.77318 * 1 2 3 29 29 H 1.08996 * 109.46746 * 301.76728 * 1 2 3 30 30 H 1.08996 * 109.46736 * 61.76926 * 1 2 3 31 31 H 1.09005 * 110.93549 * 25.38916 * 4 2 1 32 32 H 1.08999 * 110.93725 * 261.71177 * 4 2 1 33 33 H 1.08005 * 120.01469 * 0.61881 * 6 5 4 34 34 H 0.97000 * 119.99885 * 245.00238 * 11 8 7 35 35 H 1.09000 * 109.47144 * 285.00344 * 12 11 8 36 36 H 1.09003 * 109.47011 * 45.00030 * 12 11 8 37 37 H 1.09002 * 109.47008 * 69.33057 * 14 13 12 38 38 H 1.08999 * 109.47429 * 189.33002 * 14 13 12 39 39 H 1.08998 * 109.47585 * 309.33278 * 14 13 12 40 40 H 1.09004 * 109.47260 * 60.00571 * 15 13 12 41 41 H 1.09001 * 109.47029 * 179.97438 * 15 13 12 42 42 H 1.08998 * 109.47353 * 300.00559 * 15 13 12 43 43 H 0.96994 * 119.99619 * 180.02562 * 19 18 16 44 44 H 1.07994 * 119.82589 * 179.81137 * 24 7 6 45 45 H 1.07997 * 119.87961 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0782 -0.7968 1.2075 5 6 3.3054 -1.4612 0.6140 6 6 4.3940 -2.0767 1.1914 7 6 5.4000 -2.5925 0.3939 8 16 6.7939 -3.3811 1.1286 9 8 7.8486 -3.2971 0.1800 10 8 6.8945 -2.8687 2.4501 11 7 6.4256 -4.9888 1.2772 12 6 6.2206 -5.8071 0.0794 13 6 6.2678 -7.2883 0.4594 14 6 7.6311 -7.6144 1.0725 15 6 5.1658 -7.5890 1.4773 16 6 6.0575 -8.1301 -0.7728 17 1 5.9273 -7.6564 -1.7345 18 6 6.0314 -9.5049 -0.6723 19 7 6.1247 -10.2453 -1.7553 20 14 5.8634 -10.3160 1.0021 21 1 4.4275 -10.3944 1.3722 22 1 6.4363 -11.6850 0.9486 23 1 6.5930 -9.5133 2.0163 24 6 5.3072 -2.4879 -0.9819 25 6 4.2158 -1.8758 -1.5623 26 6 3.1973 -1.3567 -0.7665 27 8 2.0395 -0.7367 -1.1247 28 1 -0.3633 -1.0272 0.0318 29 1 -0.3633 0.5410 0.8737 30 1 -0.3633 0.4861 -0.9054 31 1 1.3561 -1.5412 1.5431 32 1 2.3534 -0.1279 2.0229 33 1 4.4645 -2.1525 2.2664 34 1 6.3456 -5.3887 2.1573 35 1 5.2494 -5.5748 -0.3575 36 1 7.0057 -5.5928 -0.6457 37 1 7.7155 -7.1335 2.0471 38 1 7.7278 -8.6937 1.1903 39 1 8.4213 -7.2482 0.4171 40 1 4.1944 -7.3568 1.0405 41 1 5.1991 -8.6444 1.7477 42 1 5.3183 -6.9802 2.3684 43 1 6.1059 -11.2125 -1.6845 44 1 6.0934 -2.8875 -1.6051 45 1 4.1509 -1.7987 -2.6375 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416534912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:56 Heat of formation + Delta-G solvation = -92.026973 kcal Electronic energy + Delta-G solvation = -27883.250823 eV Core-core repulsion = 23992.810568 eV Total energy + Delta-G solvation = -3890.440255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.32605 -38.96202 -38.72506 -38.26350 -36.93909 -34.91001 -34.28692 -33.12846 -32.24799 -31.46175 -27.96438 -27.71277 -27.30001 -26.49183 -24.24969 -23.07230 -22.75525 -20.98997 -20.53608 -18.99525 -18.68116 -18.40236 -17.92839 -17.91464 -16.97657 -16.90877 -16.50083 -15.86007 -15.38016 -15.34370 -15.14550 -14.76632 -14.63302 -14.48594 -14.32243 -14.11809 -14.09209 -13.71220 -13.68645 -13.55908 -13.29845 -13.19595 -13.13961 -13.09952 -13.03318 -12.43971 -12.34656 -12.03873 -11.99394 -11.92662 -11.90940 -11.87394 -11.67961 -10.99870 -10.56885 -10.46659 -10.24777 -10.11720 -9.58858 -8.26213 -6.26122 -0.62429 -0.25895 0.13421 1.38329 1.40898 1.51971 1.91425 2.10870 2.34555 2.38119 2.77609 3.10610 3.15416 3.42195 3.52268 3.69914 3.96098 4.03630 4.07112 4.09375 4.17044 4.37426 4.40620 4.48259 4.56212 4.58820 4.67162 4.75496 4.80146 4.87276 4.89864 4.92793 4.95444 4.99615 5.03165 5.07025 5.11946 5.13835 5.20405 5.31076 5.41123 5.55298 5.77120 5.85016 5.96792 6.14636 6.37394 6.79284 7.39033 8.90354 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013939 B = 0.003353 C = 0.003039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.239528 B = 8348.076912 C = 9211.978849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.066 3.934 3 H 0.105 0.895 4 C -0.102 4.102 5 C -0.204 4.204 6 C 0.023 3.977 7 C -0.709 4.709 8 S 2.718 3.282 9 O -0.987 6.987 10 O -0.982 6.982 11 N -1.105 6.105 12 C 0.147 3.853 13 C 0.029 3.971 14 C -0.147 4.147 15 C -0.151 4.151 16 C -0.512 4.512 17 H 0.040 0.960 18 C 0.018 3.982 19 N -0.945 5.945 20 Si 0.938 3.062 21 H -0.282 1.282 22 H -0.320 1.320 23 H -0.210 1.210 24 C 0.006 3.994 25 C -0.168 4.168 26 C 0.150 3.850 27 O -0.313 6.313 28 H 0.062 0.938 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.105 0.895 32 H 0.119 0.881 33 H 0.158 0.842 34 H 0.424 0.576 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.054 0.946 41 H 0.031 0.969 42 H 0.072 0.928 43 H 0.262 0.738 44 H 0.154 0.846 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.129 21.935 8.984 25.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 H 0.122 0.878 4 C -0.139 4.139 5 C -0.206 4.206 6 C 0.004 3.996 7 C -0.797 4.797 8 S 2.810 3.190 9 O -0.977 6.977 10 O -0.972 6.972 11 N -0.868 5.868 12 C 0.021 3.979 13 C 0.027 3.973 14 C -0.204 4.204 15 C -0.208 4.208 16 C -0.550 4.550 17 H 0.058 0.942 18 C -0.179 4.179 19 N -0.585 5.585 20 Si 0.768 3.232 21 H -0.209 1.209 22 H -0.250 1.250 23 H -0.134 1.134 24 C -0.013 4.013 25 C -0.187 4.187 26 C 0.103 3.897 27 O -0.227 6.227 28 H 0.081 0.919 29 H 0.125 0.875 30 H 0.089 0.911 31 H 0.123 0.877 32 H 0.137 0.863 33 H 0.175 0.825 34 H 0.261 0.739 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.049 0.951 42 H 0.091 0.909 43 H 0.071 0.929 44 H 0.171 0.829 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -9.465 22.290 8.772 25.756 hybrid contribution -0.726 -1.187 -0.047 1.392 sum -10.191 21.103 8.725 25.006 Atomic orbital electron populations 1.21934 0.90091 1.03727 1.04603 1.23846 0.97381 0.95715 0.81908 0.87764 1.22033 0.93054 0.99805 0.98995 1.21187 0.99074 1.06247 0.94090 1.20201 0.89036 0.89816 1.00558 1.30690 1.22390 1.22185 1.04462 1.00854 0.73595 0.72106 0.72494 1.93546 1.53099 1.86457 1.64616 1.93530 1.86905 1.79020 1.37737 1.55312 1.89477 1.26427 1.15610 1.21178 1.00701 0.91026 0.85027 1.18612 0.93124 0.91779 0.93795 1.22272 0.97947 1.00596 0.99604 1.22323 0.99786 0.99508 0.99162 1.21098 1.49032 0.91156 0.93734 0.94217 1.25777 0.94188 0.98109 0.99839 1.70105 1.51625 1.05627 1.31140 0.86443 0.78548 0.75654 0.82548 1.20924 1.24952 1.13361 1.20867 0.96299 0.91279 0.92864 1.20589 0.92517 1.04317 1.01295 1.20058 0.85890 0.90195 0.93602 1.86888 1.33553 1.62221 1.40026 0.91937 0.87526 0.91081 0.87683 0.86292 0.82481 0.73875 0.91592 0.91580 0.92120 0.93954 0.93858 0.92681 0.95119 0.90899 0.92864 0.82863 0.83045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.60 71.98 0.69 -0.56 16 2 C 0.07 0.86 4.26 31.18 0.13 1.00 16 3 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 4 C -0.10 -1.33 6.65 30.73 0.20 -1.12 16 5 C -0.20 -4.27 6.27 -19.53 -0.12 -4.39 16 6 C 0.02 0.52 9.51 22.18 0.21 0.73 16 7 C -0.71 -18.28 5.95 22.31 0.13 -18.15 16 8 S 2.72 77.50 5.74 -56.49 -0.32 77.17 16 9 O -0.99 -34.18 16.76 -128.00 -2.15 -36.33 16 10 O -0.98 -29.92 17.29 -128.00 -2.21 -32.13 16 11 N -1.11 -31.44 5.43 -187.49 -1.02 -32.46 16 12 C 0.15 5.13 5.04 86.38 0.44 5.57 16 13 C 0.03 1.20 0.51 -52.93 -0.03 1.17 16 14 C -0.15 -5.76 7.54 71.98 0.54 -5.21 16 15 C -0.15 -5.49 7.52 71.98 0.54 -4.95 16 16 C -0.51 -27.13 8.62 25.60 0.22 -26.91 16 17 H 0.04 2.33 7.99 -2.91 -0.02 2.31 16 18 C 0.02 1.02 5.32 84.65 0.45 1.47 16 19 N -0.95 -57.84 13.96 21.45 0.30 -57.54 16 20 Si 0.94 42.86 22.79 68.60 1.56 44.42 16 21 H -0.28 -12.56 7.10 99.48 0.71 -11.85 16 22 H -0.32 -15.23 7.11 99.48 0.71 -14.53 16 23 H -0.21 -8.29 4.65 99.48 0.46 -7.82 16 24 C 0.01 0.16 9.50 22.21 0.21 0.37 16 25 C -0.17 -4.01 10.06 22.45 0.23 -3.78 16 26 C 0.15 3.49 7.03 22.67 0.16 3.65 16 27 O -0.31 -6.63 10.81 -95.12 -1.03 -7.66 16 28 H 0.06 0.64 8.11 -2.39 -0.02 0.62 16 29 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.10 1.18 7.90 -2.38 -0.02 1.17 16 32 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.16 2.94 7.63 -2.91 -0.02 2.91 16 34 H 0.42 10.44 6.53 -96.74 -0.63 9.81 16 35 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.07 2.45 7.75 -2.39 -0.02 2.43 16 37 H 0.06 1.94 7.47 -2.39 -0.02 1.92 16 38 H 0.04 1.75 4.30 -2.39 -0.01 1.74 16 39 H 0.04 1.72 8.12 -2.39 -0.02 1.70 16 40 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 41 H 0.03 1.19 2.25 -2.39 -0.01 1.18 16 42 H 0.07 2.05 6.60 -2.39 -0.02 2.04 16 43 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 44 H 0.15 3.72 7.62 -2.91 -0.02 3.70 16 45 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -73.01 362.52 -0.72 -73.73 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 0.14 Total: 21.91 kcal Atomic # 6 Polarization: -55.12 SS G_CDS: 4.01 Total: -51.12 kcal Atomic # 7 Polarization: -89.27 SS G_CDS: -0.72 Total: -89.99 kcal Atomic # 8 Polarization: -70.73 SS G_CDS: -5.39 Total: -76.12 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 1.56 Total: 44.42 kcal Atomic # 16 Polarization: 77.50 SS G_CDS: -0.32 Total: 77.17 kcal Total: -73.01 -0.72 -73.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416534912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.299 kcal (2) G-P(sol) polarization free energy of solvation -73.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds