Wall clock time and date at job start Tue Mar 31 2020 22:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47319 * 2 1 4 4 C 1.50702 * 109.47269 * 120.00512 * 2 1 3 5 5 H 1.08001 * 119.99952 * 145.77093 * 4 2 1 6 6 C 1.37870 * 119.99932 * 325.49121 * 4 2 1 7 7 N 1.31515 * 120.00483 * 166.19162 * 6 4 2 8 8 Si 1.86810 * 120.00160 * 346.19131 * 6 4 2 9 9 H 1.48497 * 109.47080 * 95.85413 * 8 6 4 10 10 H 1.48494 * 109.46954 * 215.85415 * 8 6 4 11 11 H 1.48501 * 109.46705 * 335.85354 * 8 6 4 12 12 C 1.52998 * 109.46671 * 240.00124 * 2 1 3 13 13 S 1.81405 * 109.47349 * 60.00103 * 12 2 1 14 14 O 1.42101 * 110.54017 * 291.62190 * 13 12 2 15 15 O 1.42104 * 110.54126 * 68.36971 * 13 12 2 16 16 N 1.65599 * 104.45181 * 179.97438 * 13 12 2 17 17 C 1.46493 * 120.00072 * 64.99728 * 16 13 12 18 18 H 1.08999 * 109.42629 * 334.87946 * 17 16 13 19 19 C 1.52970 * 109.42266 * 94.70178 * 17 16 13 20 20 O 1.43209 * 108.48610 * 169.29678 * 19 17 16 21 21 C 1.42720 * 113.13553 * 289.33333 * 20 19 17 22 22 C 1.50663 * 110.26373 * 51.77778 * 21 20 19 23 23 C 1.38634 * 118.71424 * 164.16831 * 22 21 20 24 24 C 1.38053 * 120.30304 * 179.53940 * 23 22 21 25 25 C 1.38260 * 119.89167 * 0.02562 * 24 23 22 26 26 C 1.38074 * 119.86662 * 0.09223 * 25 24 23 27 27 C 1.37908 * 121.50267 * 343.88538 * 22 21 20 28 28 H 1.09001 * 109.47258 * 315.08539 * 1 2 3 29 29 H 1.08999 * 109.47801 * 75.08914 * 1 2 3 30 30 H 1.09005 * 109.47199 * 195.09193 * 1 2 3 31 31 H 1.08998 * 109.47216 * 188.28200 * 3 2 1 32 32 H 1.08997 * 109.47125 * 308.28062 * 3 2 1 33 33 H 1.08999 * 109.46899 * 68.28019 * 3 2 1 34 34 H 0.96997 * 120.00637 * 180.02562 * 7 6 4 35 35 H 1.09002 * 109.46867 * 179.97438 * 12 2 1 36 36 H 1.09003 * 109.47561 * 299.99879 * 12 2 1 37 37 H 0.97003 * 119.99816 * 244.99994 * 16 13 12 38 38 H 1.09000 * 109.63074 * 288.99315 * 19 17 16 39 39 H 1.09004 * 109.63498 * 49.59574 * 19 17 16 40 40 H 1.08997 * 109.33883 * 291.53612 * 21 20 19 41 41 H 1.08999 * 109.21142 * 171.93978 * 21 20 19 42 42 H 1.08005 * 119.85128 * 359.55519 * 23 22 21 43 43 H 1.07998 * 120.05472 * 179.97438 * 24 23 22 44 44 H 1.07998 * 120.07169 * 180.02562 * 25 24 23 45 45 H 1.07996 * 119.86039 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.9414 -1.2918 1.1849 6 6 1.3345 -0.6138 2.4155 7 7 1.6054 -1.4342 3.4071 8 14 0.0042 0.6828 2.6130 9 1 -1.3206 0.0822 2.3138 10 1 0.0129 1.1925 4.0077 11 1 0.2627 1.8041 1.6744 12 6 2.0399 -0.7212 -1.2493 13 16 1.4352 0.1339 -2.7304 14 8 0.0278 -0.0183 -2.8544 15 8 2.0478 1.4101 -2.8544 16 7 2.0538 -0.7399 -3.9937 17 6 1.6251 -2.1245 -4.2061 18 1 1.2850 -2.5477 -3.2609 19 6 0.4772 -2.1523 -5.2167 20 8 0.2417 -3.5121 -5.5992 21 6 1.2823 -4.0543 -6.4117 22 6 2.6217 -3.8396 -5.7561 23 6 3.7093 -4.5711 -6.2079 24 6 4.9537 -4.3936 -5.6371 25 6 5.1170 -3.4829 -4.6098 26 6 4.0342 -2.7555 -4.1572 27 6 2.7845 -2.9337 -4.7292 28 1 -0.3634 0.7278 0.7256 29 1 -0.3635 0.2644 -0.9930 30 1 -0.3634 -0.9923 0.2676 31 1 3.1199 1.4460 -0.1480 32 1 1.5609 1.9972 -0.8067 33 1 1.8026 1.9118 0.9547 34 1 1.1142 -1.3664 4.2407 35 1 3.1299 -0.7209 -1.2495 36 1 1.6765 -1.7489 -1.2493 37 1 2.7001 -0.3349 -4.5931 38 1 -0.4224 -1.7391 -4.7605 39 1 0.7482 -1.5664 -6.0950 40 1 1.2738 -3.5628 -7.3846 41 1 1.1130 -5.1227 -6.5456 42 1 3.5825 -5.2829 -7.0103 43 1 5.7981 -4.9659 -5.9919 44 1 6.0893 -3.3414 -4.1614 45 1 4.1618 -2.0444 -3.3544 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416641755.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:51 Heat of formation + Delta-G solvation = -69.042787 kcal Electronic energy + Delta-G solvation = -28731.377461 eV Core-core repulsion = 24841.933876 eV Total energy + Delta-G solvation = -3889.443586 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.63084 -37.77007 -36.84044 -36.76120 -35.77520 -35.50301 -31.98100 -31.94399 -30.96331 -28.97330 -27.50182 -26.45394 -25.67191 -25.04945 -23.94228 -22.32731 -20.54508 -19.97463 -18.95044 -17.82393 -17.51068 -16.74906 -16.16014 -16.10904 -15.86472 -15.66783 -15.44710 -15.20925 -14.83042 -14.36641 -14.11246 -13.65603 -13.54602 -13.42669 -13.26949 -12.83474 -12.76475 -12.61926 -12.51083 -12.23967 -11.99125 -11.69383 -11.67282 -11.43223 -11.25832 -11.16233 -11.05821 -10.87987 -10.80599 -10.47544 -10.27980 -10.12460 -9.89406 -9.50357 -9.03382 -8.98480 -8.87103 -8.73048 -8.53074 -6.21952 -4.18641 0.57569 1.04415 1.11094 2.89217 3.25878 3.32377 3.38807 3.45050 3.70932 4.02320 4.27121 4.32145 4.37607 4.52269 4.58837 4.71822 4.79601 4.92612 5.02840 5.04203 5.08766 5.19142 5.31848 5.34616 5.42238 5.50604 5.65686 5.71561 5.75336 5.80054 5.96817 6.12405 6.14546 6.24942 6.28274 6.31641 6.41256 6.44217 6.65176 6.71240 6.83924 6.86868 6.93435 7.09702 7.30631 7.59649 8.36105 8.81034 9.42355 10.90547 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016067 B = 0.003747 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.244809 B = 7470.587027 C = 7942.910580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.056 3.944 3 C -0.172 4.172 4 C -0.507 4.507 5 H 0.078 0.922 6 C 0.077 3.923 7 N -0.888 5.888 8 Si 0.884 3.116 9 H -0.284 1.284 10 H -0.303 1.303 11 H -0.251 1.251 12 C -0.573 4.573 13 S 2.583 3.417 14 O -0.960 6.960 15 O -0.961 6.961 16 N -1.117 6.117 17 C 0.165 3.835 18 H 0.107 0.893 19 C 0.044 3.956 20 O -0.368 6.368 21 C 0.096 3.904 22 C -0.110 4.110 23 C -0.116 4.116 24 C -0.115 4.115 25 C -0.118 4.118 26 C -0.100 4.100 27 C -0.085 4.085 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.036 0.964 33 H 0.068 0.932 34 H 0.266 0.734 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.415 0.585 38 H 0.119 0.881 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.107 0.893 42 H 0.124 0.876 43 H 0.124 0.876 44 H 0.126 0.874 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.006 -5.031 -20.532 21.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.054 3.946 3 C -0.229 4.229 4 C -0.545 4.545 5 H 0.096 0.904 6 C -0.126 4.126 7 N -0.524 5.524 8 Si 0.717 3.283 9 H -0.211 1.211 10 H -0.231 1.231 11 H -0.177 1.177 12 C -0.706 4.706 13 S 2.682 3.318 14 O -0.949 6.949 15 O -0.951 6.951 16 N -0.874 5.874 17 C 0.057 3.943 18 H 0.125 0.875 19 C -0.034 4.034 20 O -0.285 6.285 21 C 0.020 3.980 22 C -0.111 4.111 23 C -0.134 4.134 24 C -0.133 4.133 25 C -0.136 4.136 26 C -0.119 4.119 27 C -0.087 4.087 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.249 0.751 38 H 0.137 0.863 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.125 0.875 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.144 0.856 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.089 -4.515 -20.304 21.028 hybrid contribution 0.412 0.303 0.288 0.588 sum 3.502 -4.212 -20.016 20.752 Atomic orbital electron populations 1.23037 0.97553 1.03093 1.02466 1.18204 0.91839 0.92249 0.92352 1.22636 1.01249 0.97407 1.01656 1.20648 1.11210 1.31253 0.91429 0.90426 1.24995 0.96618 0.95095 0.95891 1.69931 1.42006 1.35197 1.05277 0.87184 0.82182 0.83639 0.75325 1.21068 1.23150 1.17715 1.30468 1.11828 1.13215 1.15138 1.06007 0.75154 0.74873 0.75802 1.93525 1.29772 1.86413 1.85237 1.93575 1.77953 1.37861 1.85694 1.55937 1.60960 1.22940 1.47594 1.20116 0.92494 0.80890 1.00837 0.87542 1.23267 0.99508 0.83203 0.97471 1.88136 1.43050 1.27237 1.70063 1.21505 0.83562 1.00145 0.92808 1.20284 0.96734 0.97290 0.96776 1.20949 0.92369 0.99699 1.00415 1.21134 0.97195 0.98316 0.96658 1.21192 0.99012 0.96338 0.97087 1.21159 0.91939 0.99322 0.99456 1.19614 0.94875 0.97544 0.96631 0.92519 0.91577 0.91031 0.92545 0.94540 0.91364 0.92396 0.85639 0.85542 0.75149 0.86323 0.91970 0.91551 0.87548 0.85772 0.85838 0.85609 0.85342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.59 6.81 37.16 0.25 -4.34 16 2 C 0.06 1.26 0.52 -155.66 -0.08 1.18 16 3 C -0.17 -3.71 7.25 37.16 0.27 -3.44 16 4 C -0.51 -13.38 8.55 -34.44 -0.29 -13.68 16 5 H 0.08 2.19 8.05 -52.49 -0.42 1.76 16 6 C 0.08 2.15 5.30 -17.82 -0.09 2.05 16 7 N -0.89 -26.14 13.96 55.43 0.77 -25.37 16 8 Si 0.88 21.56 22.87 -169.99 -3.89 17.67 16 9 H -0.28 -6.83 7.10 56.52 0.40 -6.43 16 10 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 11 H -0.25 -5.71 4.48 56.52 0.25 -5.46 16 12 C -0.57 -10.16 4.93 37.16 0.18 -9.98 16 13 S 2.58 42.23 4.48 -107.50 -0.48 41.75 16 14 O -0.96 -17.66 14.68 -57.54 -0.84 -18.50 16 15 O -0.96 -17.84 15.88 -57.54 -0.91 -18.75 16 16 N -1.12 -13.65 4.64 -5.88 -0.03 -13.68 16 17 C 0.16 1.99 2.83 -69.08 -0.20 1.79 16 18 H 0.11 1.32 7.15 -51.93 -0.37 0.95 16 19 C 0.04 0.52 6.43 37.14 0.24 0.76 16 20 O -0.37 -4.38 10.80 -35.23 -0.38 -4.76 16 21 C 0.10 0.87 6.66 35.99 0.24 1.11 16 22 C -0.11 -1.11 5.80 -104.61 -0.61 -1.71 16 23 C -0.12 -0.99 9.67 -39.50 -0.38 -1.37 16 24 C -0.11 -0.98 10.05 -39.64 -0.40 -1.37 16 25 C -0.12 -1.12 10.05 -39.63 -0.40 -1.52 16 26 C -0.10 -1.08 9.21 -39.51 -0.36 -1.45 16 27 C -0.09 -0.96 5.50 -104.59 -0.58 -1.53 16 28 H 0.06 1.30 2.58 -51.93 -0.13 1.16 16 29 H 0.07 1.37 4.58 -51.93 -0.24 1.13 16 30 H 0.07 1.61 7.81 -51.93 -0.41 1.20 16 31 H 0.06 1.13 8.13 -51.93 -0.42 0.70 16 32 H 0.04 0.74 6.08 -51.93 -0.32 0.42 16 33 H 0.07 1.51 5.20 -51.93 -0.27 1.24 16 34 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.13 1.98 8.14 -51.92 -0.42 1.55 16 36 H 0.13 2.08 7.44 -51.92 -0.39 1.70 16 37 H 0.41 4.28 8.71 -34.47 -0.30 3.98 16 38 H 0.12 1.50 7.66 -51.93 -0.40 1.10 16 39 H 0.06 0.64 8.07 -51.93 -0.42 0.22 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.12 0.75 8.06 -52.48 -0.42 0.32 16 43 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 44 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 45 H 0.13 1.32 7.72 -52.49 -0.41 0.91 16 LS Contribution 351.64 15.07 5.30 5.30 Total: -1.00 -33.09 351.64 -8.98 -42.06 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -6.31 Total: 7.78 kcal Atomic # 6 Polarization: -31.29 SS G_CDS: -2.21 Total: -33.50 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.75 Total: -39.05 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: -2.14 Total: -42.02 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -3.89 Total: 17.67 kcal Atomic # 16 Polarization: 42.23 SS G_CDS: -0.48 Total: 41.75 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.09 -8.98 -42.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416641755.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.978 kcal (2) G-P(sol) polarization free energy of solvation -33.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds