Wall clock time and date at job start Tue Mar 31 2020 22:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47319 * 2 1 4 4 C 1.50702 * 109.47269 * 120.00512 * 2 1 3 5 5 H 1.08001 * 119.99952 * 145.77093 * 4 2 1 6 6 C 1.37870 * 119.99932 * 325.49121 * 4 2 1 7 7 N 1.31515 * 120.00483 * 166.19162 * 6 4 2 8 8 Si 1.86810 * 120.00160 * 346.19131 * 6 4 2 9 9 H 1.48497 * 109.47080 * 95.85413 * 8 6 4 10 10 H 1.48494 * 109.46954 * 215.85415 * 8 6 4 11 11 H 1.48501 * 109.46705 * 335.85354 * 8 6 4 12 12 C 1.52998 * 109.46671 * 240.00124 * 2 1 3 13 13 S 1.81405 * 109.47349 * 60.00103 * 12 2 1 14 14 O 1.42101 * 110.54017 * 291.62190 * 13 12 2 15 15 O 1.42104 * 110.54126 * 68.36971 * 13 12 2 16 16 N 1.65599 * 104.45181 * 179.97438 * 13 12 2 17 17 C 1.46493 * 120.00072 * 64.99728 * 16 13 12 18 18 H 1.08999 * 109.42629 * 334.87946 * 17 16 13 19 19 C 1.52970 * 109.42266 * 94.70178 * 17 16 13 20 20 O 1.43209 * 108.48610 * 169.29678 * 19 17 16 21 21 C 1.42720 * 113.13553 * 289.33333 * 20 19 17 22 22 C 1.50663 * 110.26373 * 51.77778 * 21 20 19 23 23 C 1.38634 * 118.71424 * 164.16831 * 22 21 20 24 24 C 1.38053 * 120.30304 * 179.53940 * 23 22 21 25 25 C 1.38260 * 119.89167 * 0.02562 * 24 23 22 26 26 C 1.38074 * 119.86662 * 0.09223 * 25 24 23 27 27 C 1.37908 * 121.50267 * 343.88538 * 22 21 20 28 28 H 1.09001 * 109.47258 * 315.08539 * 1 2 3 29 29 H 1.08999 * 109.47801 * 75.08914 * 1 2 3 30 30 H 1.09005 * 109.47199 * 195.09193 * 1 2 3 31 31 H 1.08998 * 109.47216 * 188.28200 * 3 2 1 32 32 H 1.08997 * 109.47125 * 308.28062 * 3 2 1 33 33 H 1.08999 * 109.46899 * 68.28019 * 3 2 1 34 34 H 0.96997 * 120.00637 * 180.02562 * 7 6 4 35 35 H 1.09002 * 109.46867 * 179.97438 * 12 2 1 36 36 H 1.09003 * 109.47561 * 299.99879 * 12 2 1 37 37 H 0.97003 * 119.99816 * 244.99994 * 16 13 12 38 38 H 1.09000 * 109.63074 * 288.99315 * 19 17 16 39 39 H 1.09004 * 109.63498 * 49.59574 * 19 17 16 40 40 H 1.08997 * 109.33883 * 291.53612 * 21 20 19 41 41 H 1.08999 * 109.21142 * 171.93978 * 21 20 19 42 42 H 1.08005 * 119.85128 * 359.55519 * 23 22 21 43 43 H 1.07998 * 120.05472 * 179.97438 * 24 23 22 44 44 H 1.07998 * 120.07169 * 180.02562 * 25 24 23 45 45 H 1.07996 * 119.86039 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.9414 -1.2918 1.1849 6 6 1.3345 -0.6138 2.4155 7 7 1.6054 -1.4342 3.4071 8 14 0.0042 0.6828 2.6130 9 1 -1.3206 0.0822 2.3138 10 1 0.0129 1.1925 4.0077 11 1 0.2627 1.8041 1.6744 12 6 2.0399 -0.7212 -1.2493 13 16 1.4352 0.1339 -2.7304 14 8 0.0278 -0.0183 -2.8544 15 8 2.0478 1.4101 -2.8544 16 7 2.0538 -0.7399 -3.9937 17 6 1.6251 -2.1245 -4.2061 18 1 1.2850 -2.5477 -3.2609 19 6 0.4772 -2.1523 -5.2167 20 8 0.2417 -3.5121 -5.5992 21 6 1.2823 -4.0543 -6.4117 22 6 2.6217 -3.8396 -5.7561 23 6 3.7093 -4.5711 -6.2079 24 6 4.9537 -4.3936 -5.6371 25 6 5.1170 -3.4829 -4.6098 26 6 4.0342 -2.7555 -4.1572 27 6 2.7845 -2.9337 -4.7292 28 1 -0.3634 0.7278 0.7256 29 1 -0.3635 0.2644 -0.9930 30 1 -0.3634 -0.9923 0.2676 31 1 3.1199 1.4460 -0.1480 32 1 1.5609 1.9972 -0.8067 33 1 1.8026 1.9118 0.9547 34 1 1.1142 -1.3664 4.2407 35 1 3.1299 -0.7209 -1.2495 36 1 1.6765 -1.7489 -1.2493 37 1 2.7001 -0.3349 -4.5931 38 1 -0.4224 -1.7391 -4.7605 39 1 0.7482 -1.5664 -6.0950 40 1 1.2738 -3.5628 -7.3846 41 1 1.1130 -5.1227 -6.5456 42 1 3.5825 -5.2829 -7.0103 43 1 5.7981 -4.9659 -5.9919 44 1 6.0893 -3.3414 -4.1614 45 1 4.1618 -2.0444 -3.3544 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416641755.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:50 Heat of formation + Delta-G solvation = -93.250914 kcal Electronic energy + Delta-G solvation = -28732.427205 eV Core-core repulsion = 24841.933876 eV Total energy + Delta-G solvation = -3890.493329 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.40420 -38.55700 -38.55131 -38.19486 -37.04030 -36.65213 -34.05209 -32.65873 -31.78107 -29.84492 -29.05748 -28.18754 -27.10070 -26.40342 -24.77711 -23.06605 -21.74799 -21.23044 -20.35121 -19.06565 -18.48376 -18.10249 -17.69080 -17.22608 -17.04310 -16.90582 -16.53804 -16.24018 -16.08215 -15.33609 -15.17523 -15.05524 -14.90764 -14.67556 -14.47050 -14.31400 -14.18733 -13.96720 -13.54111 -13.30510 -13.15066 -13.10561 -12.97686 -12.79458 -12.68917 -12.66684 -12.52082 -12.10271 -11.99645 -11.95196 -11.83126 -11.63035 -11.32388 -10.94294 -10.60983 -10.57303 -10.34779 -9.72601 -9.60100 -8.35451 -6.34252 -0.76338 0.30540 0.40688 1.30262 1.35461 1.43380 1.69820 2.29072 2.67305 2.73784 2.89524 2.99879 3.19664 3.40726 3.67936 3.73657 3.75187 3.87678 4.02056 4.06670 4.21457 4.24023 4.28877 4.43490 4.46569 4.49395 4.54644 4.60438 4.66180 4.68561 4.75449 4.83255 4.88285 4.92835 5.02353 5.07457 5.17199 5.34866 5.45557 5.54398 5.57533 5.59415 5.61542 5.97187 6.03649 6.08105 6.25261 6.67964 7.29837 8.80716 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016067 B = 0.003747 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.244809 B = 7470.587027 C = 7942.910580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.047 3.953 3 C -0.175 4.175 4 C -0.502 4.502 5 H 0.048 0.952 6 C 0.026 3.974 7 N -0.936 5.936 8 Si 0.926 3.074 9 H -0.279 1.279 10 H -0.308 1.308 11 H -0.224 1.224 12 C -0.585 4.585 13 S 2.615 3.385 14 O -0.977 6.977 15 O -0.978 6.978 16 N -1.098 6.098 17 C 0.161 3.839 18 H 0.098 0.902 19 C 0.044 3.956 20 O -0.386 6.386 21 C 0.091 3.909 22 C -0.119 4.119 23 C -0.115 4.115 24 C -0.115 4.115 25 C -0.128 4.128 26 C -0.119 4.119 27 C -0.103 4.103 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.266 0.734 35 H 0.142 0.858 36 H 0.133 0.867 37 H 0.427 0.573 38 H 0.106 0.894 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.126 0.874 42 H 0.153 0.847 43 H 0.149 0.851 44 H 0.139 0.861 45 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.328 -5.073 -23.449 24.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C 0.044 3.956 3 C -0.232 4.232 4 C -0.540 4.540 5 H 0.066 0.934 6 C -0.173 4.173 7 N -0.575 5.575 8 Si 0.756 3.244 9 H -0.206 1.206 10 H -0.237 1.237 11 H -0.149 1.149 12 C -0.717 4.717 13 S 2.711 3.289 14 O -0.967 6.967 15 O -0.968 6.968 16 N -0.859 5.859 17 C 0.053 3.947 18 H 0.115 0.885 19 C -0.035 4.035 20 O -0.303 6.303 21 C 0.015 3.985 22 C -0.120 4.120 23 C -0.133 4.133 24 C -0.133 4.133 25 C -0.146 4.146 26 C -0.137 4.137 27 C -0.104 4.104 28 H 0.071 0.929 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.160 0.840 36 H 0.151 0.849 37 H 0.263 0.737 38 H 0.124 0.876 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.144 0.856 42 H 0.171 0.829 43 H 0.167 0.833 44 H 0.157 0.843 45 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.425 -4.544 -23.229 23.916 hybrid contribution 0.428 0.182 1.057 1.155 sum 3.853 -4.362 -22.172 22.923 Atomic orbital electron populations 1.23075 0.97565 1.02576 1.03435 1.18189 0.91994 0.92872 0.92519 1.22621 1.02218 0.96678 1.01723 1.20907 1.09856 1.30102 0.93175 0.93397 1.25701 0.99019 0.96762 0.95803 1.70048 1.44064 1.37386 1.06042 0.86494 0.79996 0.82447 0.75450 1.20557 1.23703 1.14919 1.30450 1.13034 1.13475 1.14723 1.04824 0.74438 0.74160 0.75462 1.93500 1.31085 1.86656 1.85415 1.93548 1.78223 1.39094 1.85956 1.55449 1.61053 1.23154 1.46228 1.20188 0.93355 0.80365 1.00776 0.88471 1.23203 0.98679 0.83702 0.97893 1.88105 1.44335 1.27135 1.70728 1.21777 0.82387 1.01384 0.92960 1.20503 0.97762 0.97203 0.96553 1.21294 0.91784 0.99492 1.00715 1.21497 0.98148 0.97766 0.95878 1.21451 0.99249 0.96397 0.97519 1.21269 0.92451 1.00110 0.99903 1.19587 0.94516 0.98521 0.97824 0.92864 0.89795 0.91868 0.91434 0.93147 0.92182 0.92485 0.84026 0.84854 0.73673 0.87631 0.90492 0.89665 0.85607 0.82936 0.83310 0.84308 0.85668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -9.19 6.81 71.98 0.49 -8.70 16 2 C 0.05 2.06 0.52 -52.93 -0.03 2.03 16 3 C -0.17 -7.29 7.25 71.98 0.52 -6.77 16 4 C -0.50 -26.94 8.55 25.60 0.22 -26.72 16 5 H 0.05 2.79 8.05 -2.91 -0.02 2.77 16 6 C 0.03 1.46 5.30 84.65 0.45 1.91 16 7 N -0.94 -56.90 13.96 21.44 0.30 -56.60 16 8 Si 0.93 44.28 22.87 68.60 1.57 45.85 16 9 H -0.28 -13.03 7.10 99.48 0.71 -12.33 16 10 H -0.31 -14.87 7.11 99.48 0.71 -14.16 16 11 H -0.22 -9.70 4.48 99.48 0.45 -9.26 16 12 C -0.59 -20.34 4.93 71.98 0.35 -19.99 16 13 S 2.61 81.58 4.48 -56.49 -0.25 81.33 16 14 O -0.98 -34.53 14.68 -127.65 -1.87 -36.41 16 15 O -0.98 -34.36 15.88 -127.65 -2.03 -36.39 16 16 N -1.10 -25.25 4.64 -172.52 -0.80 -26.05 16 17 C 0.16 3.72 2.83 44.25 0.13 3.84 16 18 H 0.10 2.39 7.15 -2.39 -0.02 2.37 16 19 C 0.04 0.98 6.43 71.97 0.46 1.44 16 20 O -0.39 -8.61 10.80 -148.98 -1.61 -10.22 16 21 C 0.09 1.41 6.66 71.22 0.47 1.88 16 22 C -0.12 -2.12 5.80 -19.86 -0.12 -2.24 16 23 C -0.12 -1.59 9.67 22.32 0.22 -1.38 16 24 C -0.11 -1.61 10.05 22.23 0.22 -1.39 16 25 C -0.13 -2.19 10.05 22.24 0.22 -1.96 16 26 C -0.12 -2.43 9.21 22.32 0.21 -2.22 16 27 C -0.10 -2.17 5.50 -19.84 -0.11 -2.28 16 28 H 0.05 2.35 2.58 -2.39 -0.01 2.34 16 29 H 0.08 3.35 4.58 -2.39 -0.01 3.34 16 30 H 0.06 2.82 7.81 -2.38 -0.02 2.80 16 31 H 0.07 2.61 8.13 -2.39 -0.02 2.59 16 32 H 0.05 1.95 6.08 -2.39 -0.01 1.93 16 33 H 0.06 2.56 5.20 -2.39 -0.01 2.55 16 34 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 35 H 0.14 4.37 8.14 -2.39 -0.02 4.35 16 36 H 0.13 4.39 7.44 -2.39 -0.02 4.37 16 37 H 0.43 8.03 8.71 -96.74 -0.84 7.19 16 38 H 0.11 2.60 7.66 -2.39 -0.02 2.58 16 39 H 0.08 1.45 8.07 -2.39 -0.02 1.43 16 40 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.15 1.19 8.06 -2.91 -0.02 1.16 16 43 H 0.15 1.28 8.06 -2.91 -0.02 1.26 16 44 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 45 H 0.13 2.50 7.72 -2.91 -0.02 2.47 16 Total: -1.00 -71.44 351.64 -1.07 -72.50 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: -0.08 Total: 28.54 kcal Atomic # 6 Polarization: -66.26 SS G_CDS: 3.71 Total: -62.54 kcal Atomic # 7 Polarization: -82.15 SS G_CDS: -0.50 Total: -82.65 kcal Atomic # 8 Polarization: -77.50 SS G_CDS: -5.51 Total: -83.02 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.57 Total: 45.85 kcal Atomic # 16 Polarization: 81.58 SS G_CDS: -0.25 Total: 81.33 kcal Total: -71.44 -1.07 -72.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416641755.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.747 kcal (2) G-P(sol) polarization free energy of solvation -71.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds