Wall clock time and date at job start Tue Mar 31 2020 22:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47114 * 2 1 4 4 C 1.50703 * 109.46995 * 240.00210 * 2 1 3 5 5 H 1.07995 * 119.99606 * 239.99480 * 4 2 1 6 6 C 1.37881 * 120.00034 * 60.00065 * 4 2 1 7 7 N 1.31522 * 119.99837 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99848 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46931 * 90.00268 * 8 6 4 10 10 H 1.48498 * 109.47088 * 209.99769 * 8 6 4 11 11 H 1.48499 * 109.47276 * 330.00406 * 8 6 4 12 12 C 1.52997 * 109.47014 * 120.00192 * 2 1 3 13 13 S 1.81404 * 109.47021 * 300.00166 * 12 2 1 14 14 O 1.42096 * 110.54494 * 68.37805 * 13 12 2 15 15 O 1.42102 * 110.54199 * 291.62031 * 13 12 2 16 16 N 1.65606 * 104.44738 * 180.02562 * 13 12 2 17 17 C 1.46500 * 119.99784 * 64.99779 * 16 13 12 18 18 H 1.09003 * 109.42477 * 24.87946 * 17 16 13 19 19 C 1.52971 * 109.42261 * 264.99716 * 17 16 13 20 20 O 1.43215 * 108.48062 * 190.78548 * 19 17 16 21 21 C 1.42717 * 113.12770 * 70.68948 * 20 19 17 22 22 C 1.50661 * 110.26094 * 308.21991 * 21 20 19 23 23 C 1.38635 * 118.71077 * 195.88888 * 22 21 20 24 24 C 1.38055 * 120.29947 * 180.20595 * 23 22 21 25 25 C 1.38256 * 119.89465 * 0.07795 * 24 23 22 26 26 C 1.38068 * 119.86799 * 359.91548 * 25 24 23 27 27 C 1.37913 * 121.50545 * 16.05712 * 22 21 20 28 28 H 1.09003 * 109.47394 * 299.99758 * 1 2 3 29 29 H 1.09005 * 109.47223 * 59.99537 * 1 2 3 30 30 H 1.09001 * 109.47395 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46904 * 179.97438 * 3 2 1 32 32 H 1.08993 * 109.47074 * 300.00498 * 3 2 1 33 33 H 1.09003 * 109.46793 * 59.99874 * 3 2 1 34 34 H 0.97000 * 119.99838 * 180.02562 * 7 6 4 35 35 H 1.08997 * 109.47252 * 179.97438 * 12 2 1 36 36 H 1.09003 * 109.47369 * 59.99954 * 12 2 1 37 37 H 0.96998 * 119.99727 * 245.00001 * 16 13 12 38 38 H 1.09004 * 109.63374 * 71.09068 * 19 17 16 39 39 H 1.08998 * 109.63967 * 310.48014 * 19 17 16 40 40 H 1.09003 * 109.34318 * 187.97510 * 21 20 19 41 41 H 1.09003 * 109.33759 * 68.45292 * 21 20 19 42 42 H 1.07997 * 119.85084 * 0.18329 * 23 22 21 43 43 H 1.08004 * 120.05041 * 179.79823 * 24 23 22 44 44 H 1.08007 * 120.06680 * 179.90100 * 25 24 23 45 45 H 1.07996 * 119.86415 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8304 -2.6034 8 14 2.3225 -1.1194 -4.0080 9 1 1.3447 -2.1614 -4.4125 10 1 2.4872 -0.1401 -5.1120 11 1 3.6308 -1.7565 -3.7120 12 6 2.0400 -0.7213 1.2492 13 16 1.4352 0.1338 2.7304 14 8 0.0279 -0.0184 2.8544 15 8 2.0479 1.4099 2.8545 16 7 2.0541 -0.7402 3.9936 17 6 3.5026 -0.7964 4.2053 18 1 3.9675 0.0870 3.7675 19 6 4.0660 -2.0518 3.5370 20 8 5.4223 -2.2233 3.9636 21 6 5.5345 -2.6159 5.3311 22 6 4.7440 -1.6808 6.2089 23 6 4.9869 -1.6836 7.5738 24 6 4.2785 -0.8432 8.4091 25 6 3.3211 0.0044 7.8832 26 6 3.0782 0.0083 6.5241 27 6 3.7905 -0.8334 5.6845 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 0.7089 1.1616 -3.4844 35 1 3.1300 -0.7217 1.2490 36 1 1.6767 -1.7490 1.2492 37 1 1.4574 -1.2148 4.5932 38 1 4.0347 -1.9354 2.4537 39 1 3.4766 -2.9199 3.8324 40 1 6.5827 -2.5910 5.6291 41 1 5.1523 -3.6300 5.4480 42 1 5.7335 -2.3465 7.9855 43 1 4.4687 -0.8510 9.4722 44 1 2.7641 0.6619 8.5344 45 1 2.3300 0.6701 6.1134 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416641762.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:55 Heat of formation + Delta-G solvation = -89.930174 kcal Electronic energy + Delta-G solvation = -28557.822304 eV Core-core repulsion = 24667.472973 eV Total energy + Delta-G solvation = -3890.349331 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.62228 -37.77388 -36.64339 -36.31478 -35.69667 -35.32772 -31.95015 -31.69680 -30.95499 -28.94439 -26.74890 -25.74083 -25.66059 -25.23678 -23.90013 -22.30815 -20.49240 -19.68999 -18.90045 -17.80018 -17.30607 -16.71975 -16.10349 -16.01633 -15.74091 -15.51454 -15.33278 -14.79690 -14.74986 -14.34914 -14.04878 -13.64379 -13.43083 -13.11708 -13.03520 -12.75517 -12.55884 -12.47230 -12.15047 -11.95507 -11.82701 -11.51130 -11.29234 -11.12262 -11.08201 -11.00104 -10.84896 -10.72465 -10.54394 -10.35523 -10.29656 -10.09905 -9.67647 -9.64770 -9.38182 -8.98283 -8.86939 -8.69824 -8.41525 -6.04962 -4.17067 0.72682 1.06095 1.12121 3.02524 3.25456 3.32986 3.35080 3.45251 3.72247 4.20009 4.28318 4.36584 4.38575 4.53069 4.69319 4.75773 4.83872 4.97313 5.05471 5.09389 5.20317 5.26514 5.30015 5.34489 5.51340 5.60916 5.67550 5.75442 5.79156 5.83582 6.14278 6.25371 6.33077 6.34235 6.67135 6.71844 6.76932 6.84124 6.87401 6.96753 7.04773 7.29306 7.47919 7.66441 7.96127 8.07300 8.30692 8.81447 9.48626 10.96396 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019249 B = 0.003430 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.272581 B = 8160.533000 C = 9186.229046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.083 3.917 3 C -0.164 4.164 4 C -0.503 4.503 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 C -0.584 4.584 13 S 2.589 3.411 14 O -0.961 6.961 15 O -0.960 6.960 16 N -1.120 6.120 17 C 0.159 3.841 18 H 0.114 0.886 19 C 0.035 3.965 20 O -0.366 6.366 21 C 0.097 3.903 22 C -0.111 4.111 23 C -0.117 4.117 24 C -0.116 4.116 25 C -0.121 4.121 26 C -0.099 4.099 27 C -0.079 4.079 28 H 0.027 0.973 29 H 0.095 0.905 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.095 0.905 33 H 0.027 0.973 34 H 0.262 0.738 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.414 0.586 38 H 0.112 0.888 39 H 0.067 0.933 40 H 0.107 0.893 41 H 0.068 0.932 42 H 0.124 0.876 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.931 -6.263 19.254 21.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.081 3.919 3 C -0.222 4.222 4 C -0.542 4.542 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 C -0.718 4.718 13 S 2.687 3.313 14 O -0.951 6.951 15 O -0.950 6.950 16 N -0.876 5.876 17 C 0.051 3.949 18 H 0.132 0.868 19 C -0.043 4.043 20 O -0.282 6.282 21 C 0.020 3.980 22 C -0.112 4.112 23 C -0.135 4.135 24 C -0.134 4.134 25 C -0.139 4.139 26 C -0.117 4.117 27 C -0.081 4.081 28 H 0.046 0.954 29 H 0.114 0.886 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.114 0.886 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.247 0.753 38 H 0.130 0.870 39 H 0.085 0.915 40 H 0.125 0.875 41 H 0.085 0.915 42 H 0.142 0.858 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.595 -5.228 18.983 20.765 hybrid contribution 0.178 -1.224 -0.564 1.360 sum 6.773 -6.452 18.419 20.658 Atomic orbital electron populations 1.22283 0.96908 1.00662 1.02328 1.17928 0.92808 0.92218 0.88941 1.22282 0.99789 0.97758 1.02368 1.20936 1.31789 1.12120 0.89339 0.92217 1.24938 0.94879 0.94949 0.98953 1.69803 1.36312 1.22515 1.23514 0.86531 0.79214 0.79362 0.82511 1.20672 1.21144 1.19888 1.30648 1.11214 1.13027 1.16911 1.05813 0.74487 0.75344 0.75648 1.93565 1.29243 1.86606 1.85693 1.93556 1.78058 1.37949 1.85435 1.55992 1.12755 1.70991 1.47879 1.20180 0.81075 1.00608 0.93052 0.86797 1.23410 0.83216 0.96788 1.00934 1.88134 1.25444 1.89273 1.25382 1.21503 1.00281 0.95376 0.80826 1.20299 0.97805 0.98042 0.95046 1.20941 1.00360 0.99769 0.92404 1.21118 0.96306 0.96270 0.99729 1.21176 0.98278 0.99237 0.95190 1.21173 0.99238 0.97945 0.93333 1.19562 0.96801 0.97020 0.94710 0.95446 0.88593 0.94428 0.94382 0.88606 0.95373 0.92726 0.86278 0.86025 0.75301 0.86974 0.91464 0.87504 0.91453 0.85759 0.85877 0.85747 0.85363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 7.77 37.16 0.29 -3.69 16 2 C 0.08 1.97 0.52 -155.66 -0.08 1.89 16 3 C -0.16 -3.98 7.78 37.16 0.29 -3.69 16 4 C -0.50 -12.93 8.01 -34.44 -0.28 -13.20 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 6 C 0.06 1.70 5.15 -17.81 -0.09 1.61 16 7 N -0.88 -23.88 9.35 55.43 0.52 -23.36 16 8 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 12 C -0.58 -10.87 4.41 37.16 0.16 -10.71 16 13 S 2.59 46.08 4.47 -107.50 -0.48 45.60 16 14 O -0.96 -19.51 15.70 -57.54 -0.90 -20.41 16 15 O -0.96 -19.55 15.01 -57.54 -0.86 -20.41 16 16 N -1.12 -14.76 4.64 -5.88 -0.03 -14.79 16 17 C 0.16 2.01 2.96 -69.08 -0.20 1.81 16 18 H 0.11 1.57 7.47 -51.93 -0.39 1.18 16 19 C 0.03 0.41 6.31 37.14 0.23 0.64 16 20 O -0.37 -4.38 10.80 -35.23 -0.38 -4.76 16 21 C 0.10 0.89 6.66 35.99 0.24 1.13 16 22 C -0.11 -1.14 5.80 -104.61 -0.61 -1.75 16 23 C -0.12 -1.00 9.67 -39.50 -0.38 -1.39 16 24 C -0.12 -0.99 10.05 -39.64 -0.40 -1.38 16 25 C -0.12 -1.16 10.05 -39.64 -0.40 -1.56 16 26 C -0.10 -1.14 9.22 -39.51 -0.36 -1.50 16 27 C -0.08 -0.94 5.50 -104.59 -0.58 -1.52 16 28 H 0.03 0.63 5.46 -51.93 -0.28 0.34 16 29 H 0.10 2.51 6.07 -51.93 -0.32 2.20 16 30 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.10 2.51 6.07 -51.93 -0.32 2.20 16 33 H 0.03 0.64 5.46 -51.93 -0.28 0.36 16 34 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 35 H 0.12 1.98 6.65 -51.93 -0.35 1.64 16 36 H 0.12 2.01 8.14 -51.92 -0.42 1.59 16 37 H 0.41 4.65 8.72 -34.47 -0.30 4.35 16 38 H 0.11 1.30 6.08 -51.93 -0.32 0.98 16 39 H 0.07 0.67 8.07 -51.93 -0.42 0.25 16 40 H 0.11 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 43 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 44 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 45 H 0.13 1.53 7.73 -52.49 -0.41 1.12 16 LS Contribution 359.41 15.07 5.42 5.42 Total: -1.00 -32.03 359.41 -10.20 -42.23 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -6.30 Total: 8.37 kcal Atomic # 6 Polarization: -31.14 SS G_CDS: -2.16 Total: -33.30 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.49 Total: -38.15 kcal Atomic # 8 Polarization: -43.44 SS G_CDS: -2.15 Total: -45.59 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Atomic # 16 Polarization: 46.08 SS G_CDS: -0.48 Total: 45.60 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.03 -10.20 -42.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416641762.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.704 kcal (2) G-P(sol) polarization free energy of solvation -32.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds