Wall clock time and date at job start Tue Mar 31 2020 23:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46875 * 2 1 4 4 O 1.42902 * 109.47121 * 180.02562 * 3 2 1 5 5 C 1.35900 * 117.00066 * 179.97438 * 4 3 2 6 6 C 1.38732 * 120.05158 * 180.02562 * 5 4 3 7 7 C 1.38151 * 119.94023 * 180.02562 * 6 5 4 8 8 C 1.38266 * 120.05758 * 0.02562 * 7 6 5 9 9 S 1.76194 * 119.94694 * 179.97438 * 8 7 6 10 10 O 1.42108 * 106.40200 * 336.46509 * 9 8 7 11 11 O 1.42095 * 106.40449 * 203.53933 * 9 8 7 12 12 N 1.65604 * 107.22066 * 90.00048 * 9 8 7 13 13 C 1.46500 * 119.99810 * 62.14309 * 12 9 8 14 14 C 1.52993 * 109.47117 * 160.10548 * 13 12 9 15 15 C 1.50706 * 115.55179 * 294.51908 * 14 13 12 16 16 H 1.07999 * 119.99580 * 114.53923 * 15 14 13 17 17 C 1.37873 * 120.00135 * 294.26839 * 15 14 13 18 18 N 1.31507 * 120.00330 * 176.85287 * 17 15 14 19 19 Si 1.86797 * 119.99824 * 356.85012 * 17 15 14 20 20 H 1.48500 * 109.47095 * 92.38466 * 19 17 15 21 21 H 1.48501 * 109.47382 * 212.38604 * 19 17 15 22 22 H 1.48505 * 109.47560 * 332.38773 * 19 17 15 23 23 C 1.53004 * 117.50173 * 80.19077 * 14 13 12 24 24 C 1.53007 * 117.50053 * 148.85061 * 14 13 12 25 25 C 1.38265 * 120.10890 * 0.25795 * 8 7 6 26 26 C 1.38144 * 120.06021 * 359.44761 * 25 8 7 27 27 H 1.09001 * 109.46808 * 299.99716 * 1 2 3 28 28 H 1.08993 * 109.47645 * 59.99627 * 1 2 3 29 29 H 1.09005 * 109.46903 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46808 * 240.00284 * 2 1 3 31 31 H 1.08996 * 109.47322 * 119.99950 * 2 1 3 32 32 H 1.09001 * 109.47615 * 60.00209 * 3 2 1 33 33 H 1.09004 * 109.47385 * 300.00077 * 3 2 1 34 34 H 1.07997 * 120.03609 * 359.97438 * 6 5 4 35 35 H 1.07998 * 119.97085 * 180.02562 * 7 6 5 36 36 H 0.97000 * 120.00055 * 242.15424 * 12 9 8 37 37 H 1.09001 * 109.47121 * 40.10739 * 13 12 9 38 38 H 1.09007 * 109.47319 * 280.10499 * 13 12 9 39 39 H 0.97002 * 120.00288 * 180.02562 * 18 17 15 40 40 H 1.09000 * 117.50224 * 215.00459 * 23 14 13 41 41 H 1.09005 * 117.49318 * 0.02562 * 23 14 13 42 42 H 1.08998 * 117.49371 * 359.97438 * 24 14 13 43 43 H 1.09003 * 117.49671 * 144.97479 * 24 14 13 44 44 H 1.08009 * 119.97374 * 179.70630 * 25 8 7 45 45 H 1.07997 * 120.03683 * 180.24901 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4426 -0.0006 5 6 4.0859 2.6535 -0.0012 6 6 5.4713 2.7274 -0.0024 7 6 6.0960 3.9595 -0.0025 8 6 5.3418 5.1184 -0.0009 9 16 6.1417 6.6883 -0.0003 10 8 7.4380 6.4781 0.5427 11 8 5.2108 7.6127 0.5456 12 7 6.3629 7.1264 -1.5820 13 6 5.2040 7.3250 -2.4559 14 6 5.6131 8.1757 -3.6600 15 6 6.0184 9.5930 -3.3468 16 1 7.0357 9.9136 -3.5160 17 6 5.0891 10.4820 -2.8498 18 7 5.4563 11.7005 -2.5183 19 14 3.3083 9.9556 -2.6472 20 1 3.1002 9.4319 -1.2733 21 1 2.4184 11.1230 -2.8720 22 1 2.9905 8.8934 -3.6352 23 6 6.3370 7.4715 -4.8093 24 6 4.8852 7.9248 -4.9823 25 6 3.9610 5.0473 0.0062 26 6 3.3314 3.8177 0.0001 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 6.0609 1.8225 -0.0023 35 1 7.1744 4.0176 -0.0038 36 1 7.2597 7.2514 -1.9298 37 1 4.4147 7.8341 -1.9028 38 1 4.8395 6.3576 -2.8016 39 1 4.8026 12.3258 -2.1682 40 1 7.1065 8.0332 -5.3389 41 1 6.5215 6.4020 -4.7077 42 1 4.1152 7.1535 -4.9943 43 1 4.6992 8.7850 -5.6254 44 1 3.3741 5.9540 0.0122 45 1 2.2528 3.7627 0.0016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429926270.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:49 Heat of formation + Delta-G solvation = -67.027480 kcal Electronic energy + Delta-G solvation = -27469.178048 eV Core-core repulsion = 23579.821853 eV Total energy + Delta-G solvation = -3889.356195 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.49530 -37.91214 -37.44412 -36.79216 -35.43924 -34.41146 -33.41190 -32.10312 -31.34623 -30.38568 -27.08387 -26.44320 -24.82556 -23.43250 -22.94967 -21.66121 -21.60583 -19.39639 -19.03537 -18.62988 -17.53207 -17.11125 -16.75303 -16.44782 -16.38865 -15.33209 -14.93428 -14.89650 -14.62794 -14.44890 -14.22756 -13.79218 -13.52552 -13.38049 -13.24715 -12.98959 -12.91695 -12.62579 -12.55529 -12.42977 -11.86411 -11.75399 -11.67533 -11.59768 -11.57694 -11.14119 -11.11604 -10.98258 -10.79480 -10.61805 -10.59723 -10.25594 -9.59084 -9.31451 -9.19768 -8.82417 -8.79605 -8.64039 -8.46896 -6.09144 -4.11655 0.62981 0.89748 1.08422 2.68961 3.18774 3.34221 3.41189 3.43702 3.57221 4.12662 4.30006 4.36843 4.45007 4.47885 4.51722 4.69569 4.76729 4.86117 4.88952 4.91925 5.06626 5.12936 5.22320 5.24719 5.37718 5.46194 5.54883 5.60904 5.64692 5.71477 5.75934 5.86257 5.94715 5.96788 5.99879 6.06423 6.11743 6.41222 6.44256 6.61090 6.70434 6.98926 7.04337 7.12121 7.59674 7.73195 8.49221 8.92421 9.53669 11.02596 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013113 B = 0.003397 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.803844 B = 8241.567396 C = 8978.589006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.053 3.947 4 O -0.312 6.312 5 C 0.179 3.821 6 C -0.175 4.175 7 C 0.021 3.979 8 C -0.710 4.710 9 S 2.693 3.307 10 O -0.968 6.968 11 O -0.954 6.954 12 N -1.090 6.090 13 C 0.151 3.849 14 C -0.007 4.007 15 C -0.486 4.486 16 H 0.078 0.922 17 C 0.083 3.917 18 N -0.893 5.893 19 Si 0.853 3.147 20 H -0.265 1.265 21 H -0.291 1.291 22 H -0.250 1.250 23 C -0.181 4.181 24 C -0.188 4.188 25 C 0.021 3.979 26 C -0.231 4.231 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.139 0.861 35 H 0.148 0.852 36 H 0.422 0.578 37 H 0.067 0.933 38 H 0.043 0.957 39 H 0.266 0.734 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.144 0.856 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.184 -22.863 3.847 24.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.022 4.022 4 O -0.225 6.225 5 C 0.132 3.868 6 C -0.194 4.194 7 C 0.002 3.998 8 C -0.796 4.796 9 S 2.781 3.219 10 O -0.959 6.959 11 O -0.944 6.944 12 N -0.851 5.851 13 C 0.025 3.975 14 C -0.010 4.010 15 C -0.523 4.523 16 H 0.096 0.904 17 C -0.120 4.120 18 N -0.529 5.529 19 Si 0.679 3.321 20 H -0.190 1.190 21 H -0.217 1.217 22 H -0.173 1.173 23 C -0.218 4.218 24 C -0.227 4.227 25 C 0.002 3.998 26 C -0.250 4.250 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.157 0.843 35 H 0.166 0.834 36 H 0.258 0.742 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.161 0.839 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.136 -22.445 4.741 24.024 hybrid contribution -1.225 -0.538 -0.335 1.379 sum -8.361 -22.983 4.405 24.850 Atomic orbital electron populations 1.21699 0.94041 1.02666 1.02408 1.21490 0.96206 0.94544 1.03818 1.23009 0.77928 0.99246 1.02006 1.86072 1.21865 1.26996 1.87558 1.19252 0.92496 0.84058 0.90969 1.20526 0.91342 0.98898 1.08655 1.20754 1.00151 0.90110 0.88828 1.31109 1.05065 1.22288 1.21146 1.01878 0.73452 0.73594 0.72986 1.93548 1.38779 1.86584 1.76940 1.93602 1.64864 1.59246 1.76664 1.54999 1.15806 1.84464 1.29839 1.21049 0.86548 0.97179 0.92762 1.19501 1.00247 0.96052 0.85161 1.20207 0.98133 0.90343 1.43639 0.90384 1.24901 0.98690 0.94603 0.93830 1.69867 1.34880 1.05547 1.42633 0.87223 0.85637 0.79189 0.80019 1.19017 1.21721 1.17329 1.22804 0.95338 0.98326 1.05306 1.23061 0.93611 1.02109 1.03887 1.20807 0.92572 0.98299 0.88154 1.21342 1.00432 0.92253 1.11016 0.92267 0.92206 0.91602 0.90701 0.90751 0.91580 0.91508 0.84330 0.83443 0.74249 0.91529 0.93856 0.92450 0.89566 0.90845 0.91244 0.89290 0.83867 0.84662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.91 37.16 0.37 -0.32 16 2 C -0.12 -0.73 6.30 -26.73 -0.17 -0.89 16 3 C 0.05 0.40 4.74 37.16 0.18 0.58 16 4 O -0.31 -3.25 10.14 -19.43 -0.20 -3.45 16 5 C 0.18 2.10 6.69 -39.21 -0.26 1.83 16 6 C -0.17 -2.03 9.99 -39.43 -0.39 -2.42 16 7 C 0.02 0.26 9.52 -39.60 -0.38 -0.11 16 8 C -0.71 -10.45 5.89 -39.56 -0.23 -10.68 16 9 S 2.69 48.07 5.73 -107.50 -0.62 47.46 16 10 O -0.97 -18.32 17.28 -57.17 -0.99 -19.30 16 11 O -0.95 -20.53 16.78 -57.17 -0.96 -21.49 16 12 N -1.09 -19.84 5.88 -10.61 -0.06 -19.90 16 13 C 0.15 2.96 5.66 -4.04 -0.02 2.93 16 14 C -0.01 -0.15 0.85 -155.66 -0.13 -0.29 16 15 C -0.49 -13.01 9.31 -34.44 -0.32 -13.33 16 16 H 0.08 2.28 8.06 -52.49 -0.42 1.85 16 17 C 0.08 2.36 5.47 -17.82 -0.10 2.26 16 18 N -0.89 -27.10 13.96 55.43 0.77 -26.33 16 19 Si 0.85 20.93 24.88 -169.99 -4.23 16.70 16 20 H -0.26 -6.57 7.02 56.52 0.40 -6.17 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.25 -5.53 5.81 56.52 0.33 -5.20 16 23 C -0.18 -3.35 9.96 -26.69 -0.27 -3.61 16 24 C -0.19 -3.69 8.15 -26.69 -0.22 -3.91 16 25 C 0.02 0.29 9.51 -39.61 -0.38 -0.09 16 26 C -0.23 -2.72 9.04 -39.43 -0.36 -3.07 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.45 7.66 -51.93 -0.40 0.05 16 33 H 0.07 0.46 7.66 -51.93 -0.40 0.07 16 34 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.15 1.64 7.61 -52.49 -0.40 1.24 16 36 H 0.42 7.20 8.69 -34.47 -0.30 6.90 16 37 H 0.07 1.43 4.50 -51.93 -0.23 1.19 16 38 H 0.04 0.71 8.09 -51.93 -0.42 0.29 16 39 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 40 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.09 1.82 8.14 -51.93 -0.42 1.40 16 44 H 0.14 1.95 7.61 -52.48 -0.40 1.55 16 45 H 0.14 1.24 6.30 -52.49 -0.33 0.91 16 LS Contribution 381.40 15.07 5.75 5.75 Total: -1.00 -34.00 381.40 -9.95 -43.96 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -6.74 Total: 7.73 kcal Atomic # 6 Polarization: -28.45 SS G_CDS: -2.68 Total: -31.13 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 0.71 Total: -46.23 kcal Atomic # 8 Polarization: -42.10 SS G_CDS: -2.14 Total: -44.24 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.23 Total: 16.70 kcal Atomic # 16 Polarization: 48.07 SS G_CDS: -0.62 Total: 47.46 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.00 -9.95 -43.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429926270.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.070 kcal (2) G-P(sol) polarization free energy of solvation -34.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds