Wall clock time and date at job start Tue Mar 31 2020 23:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47153 * 2 1 4 4 O 1.42896 * 109.46949 * 120.00061 * 2 1 3 5 5 C 1.35900 * 117.00252 * 84.85490 * 4 2 1 6 6 C 1.38736 * 120.05753 * 174.38943 * 5 4 2 7 7 C 1.38144 * 119.94647 * 180.02562 * 6 5 4 8 8 C 1.38272 * 120.05373 * 0.02562 * 7 6 5 9 9 S 1.76199 * 119.94260 * 179.97438 * 8 7 6 10 10 O 1.42097 * 106.40170 * 336.46429 * 9 8 7 11 11 O 1.42097 * 106.40191 * 203.54064 * 9 8 7 12 12 N 1.65603 * 107.21495 * 90.00215 * 9 8 7 13 13 C 1.46499 * 120.00217 * 62.31626 * 12 9 8 14 14 C 1.52997 * 109.47617 * 160.11865 * 13 12 9 15 15 C 1.50699 * 115.54621 * 294.89219 * 14 13 12 16 16 H 1.08004 * 119.99566 * 116.58062 * 15 14 13 17 17 C 1.37879 * 120.00400 * 296.30692 * 15 14 13 18 18 N 1.31513 * 119.99841 * 174.28127 * 17 15 14 19 19 Si 1.86799 * 119.99723 * 354.27893 * 17 15 14 20 20 H 1.48503 * 109.47032 * 93.97552 * 19 17 15 21 21 H 1.48495 * 109.47025 * 213.97294 * 19 17 15 22 22 H 1.48500 * 109.47255 * 333.97866 * 19 17 15 23 23 C 1.53001 * 117.49763 * 80.56061 * 14 13 12 24 24 C 1.52994 * 117.50013 * 149.22171 * 14 13 12 25 25 C 1.38265 * 120.11144 * 0.26065 * 8 7 6 26 26 C 1.38149 * 120.05315 * 359.44949 * 25 8 7 27 27 H 1.08999 * 109.47203 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46910 * 300.00342 * 1 2 3 29 29 H 1.09004 * 109.47461 * 60.00238 * 1 2 3 30 30 H 1.08998 * 109.46910 * 239.99658 * 2 1 3 31 31 H 1.09004 * 109.46977 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46797 * 299.99443 * 3 2 1 33 33 H 1.08998 * 109.47491 * 60.00014 * 3 2 1 34 34 H 1.07998 * 120.02701 * 359.97438 * 6 5 4 35 35 H 1.07997 * 119.97552 * 179.97438 * 7 6 5 36 36 H 0.96998 * 119.99785 * 242.30276 * 12 9 8 37 37 H 1.09007 * 109.47312 * 40.11107 * 13 12 9 38 38 H 1.09005 * 109.47017 * 280.12109 * 13 12 9 39 39 H 0.96999 * 119.99480 * 180.02562 * 18 17 15 40 40 H 1.08997 * 117.49679 * 215.00280 * 23 14 13 41 41 H 1.08998 * 117.50186 * 0.02693 * 23 14 13 42 42 H 1.09006 * 117.50163 * 359.97438 * 24 14 13 43 43 H 1.09007 * 117.49851 * 144.97120 * 24 14 13 44 44 H 1.07998 * 119.97359 * 179.70572 * 25 8 7 45 45 H 1.08006 * 120.02552 * 180.25632 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.1096 -2.0270 1.0989 6 6 2.6734 -2.7345 2.1507 7 6 2.7777 -4.1101 2.0791 8 6 2.3212 -4.7819 0.9601 9 16 2.4564 -6.5365 0.8715 10 8 3.5094 -6.9027 1.7525 11 8 2.4468 -6.8704 -0.5096 12 7 1.0673 -7.1681 1.5150 13 6 -0.2252 -6.8882 0.8848 14 6 -1.2472 -7.9363 1.3294 15 6 -0.9680 -9.3476 0.8805 16 1 -0.7734 -10.1182 1.6117 17 6 -0.9667 -9.6561 -0.4633 18 7 -0.6133 -10.8587 -0.8615 19 14 -1.4667 -8.3660 -1.7182 20 1 -0.2560 -7.6660 -2.2179 21 1 -2.1624 -9.0233 -2.8536 22 1 -2.3791 -7.3829 -1.0808 23 6 -1.9030 -7.7472 2.6988 24 6 -2.7110 -7.5010 1.4222 25 6 1.7643 -4.0786 -0.0921 26 6 1.6523 -2.7034 -0.0227 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 3.0312 -2.2101 3.0245 35 1 3.2169 -4.6613 2.8974 36 1 1.1096 -7.7236 2.3090 37 1 -0.1163 -6.9238 -0.1993 38 1 -0.5678 -5.8973 1.1830 39 1 -0.6120 -11.0756 -1.8069 40 1 -2.1325 -8.6435 3.2749 41 1 -1.6067 -6.8758 3.2827 42 1 -2.9459 -6.4677 1.1668 43 1 -3.4721 -8.2352 1.1581 44 1 1.4129 -4.6051 -0.9670 45 1 1.2134 -2.1548 -0.8431 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429982750.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:53 Heat of formation + Delta-G solvation = -62.107701 kcal Electronic energy + Delta-G solvation = -27848.649425 eV Core-core repulsion = 23959.506567 eV Total energy + Delta-G solvation = -3889.142858 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.64741 -38.00119 -37.44214 -36.78575 -35.43230 -33.71843 -33.39955 -32.10829 -31.25849 -30.20159 -27.74109 -26.44175 -24.82721 -23.89725 -23.11840 -21.61220 -21.30079 -19.39579 -19.04242 -18.71336 -17.53010 -17.10841 -16.44552 -16.36706 -15.88135 -15.31073 -15.13013 -14.90524 -14.44407 -14.26245 -14.13007 -13.66039 -13.47663 -13.33176 -13.28866 -12.99027 -12.78003 -12.71652 -12.61493 -12.45750 -12.28391 -11.70964 -11.64936 -11.58861 -11.55522 -11.26991 -11.00690 -10.97633 -10.77987 -10.61167 -10.59303 -10.25561 -9.58366 -9.29731 -9.19801 -8.84027 -8.77966 -8.63695 -8.44472 -6.09569 -4.11327 0.63951 0.90809 1.09380 2.71858 3.20046 3.34165 3.41599 3.44112 3.57950 4.13516 4.26774 4.37801 4.45160 4.46247 4.53618 4.62930 4.78458 4.86103 5.01571 5.06659 5.08543 5.23362 5.25940 5.27129 5.35156 5.40713 5.60529 5.61065 5.69980 5.71580 5.78961 5.86202 5.95057 5.98688 6.01145 6.07320 6.12128 6.43194 6.44482 6.61223 6.70710 7.02908 7.04207 7.12343 7.60502 7.73493 8.49198 8.92323 9.53622 11.02200 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013728 B = 0.003670 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.174020 B = 7628.317664 C = 8275.002687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.072 3.928 3 C -0.148 4.148 4 O -0.307 6.307 5 C 0.181 3.819 6 C -0.176 4.176 7 C 0.021 3.979 8 C -0.711 4.711 9 S 2.692 3.308 10 O -0.968 6.968 11 O -0.954 6.954 12 N -1.090 6.090 13 C 0.151 3.849 14 C -0.006 4.006 15 C -0.487 4.487 16 H 0.078 0.922 17 C 0.084 3.916 18 N -0.892 5.892 19 Si 0.852 3.148 20 H -0.264 1.264 21 H -0.290 1.290 22 H -0.249 1.249 23 C -0.181 4.181 24 C -0.189 4.189 25 C 0.021 3.979 26 C -0.233 4.233 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.138 0.862 35 H 0.148 0.852 36 H 0.422 0.578 37 H 0.066 0.934 38 H 0.043 0.957 39 H 0.266 0.734 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.143 0.857 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.327 23.328 3.057 23.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.017 3.983 3 C -0.205 4.205 4 O -0.220 6.220 5 C 0.134 3.866 6 C -0.195 4.195 7 C 0.002 3.998 8 C -0.797 4.797 9 S 2.781 3.219 10 O -0.959 6.959 11 O -0.944 6.944 12 N -0.851 5.851 13 C 0.025 3.975 14 C -0.009 4.009 15 C -0.524 4.524 16 H 0.096 0.904 17 C -0.120 4.120 18 N -0.528 5.528 19 Si 0.678 3.322 20 H -0.190 1.190 21 H -0.217 1.217 22 H -0.173 1.173 23 C -0.218 4.218 24 C -0.228 4.228 25 C 0.001 3.999 26 C -0.252 4.252 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.156 0.844 35 H 0.165 0.835 36 H 0.258 0.742 37 H 0.084 0.916 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.161 0.839 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.096 23.018 2.535 23.517 hybrid contribution -0.769 1.011 -0.556 1.387 sum 3.327 24.029 1.979 24.339 Atomic orbital electron populations 1.22416 0.94622 1.03570 1.03426 1.22557 0.94718 0.93828 0.87240 1.21859 1.02191 0.93236 1.03249 1.86145 1.80282 1.16302 1.39279 1.19253 0.91083 0.82488 0.93761 1.20530 1.05874 0.93772 0.99346 1.20753 0.90541 0.93458 0.95072 1.31104 1.17450 1.27982 1.03134 1.01879 0.72757 0.73303 0.73999 1.93545 1.53284 1.82359 1.66668 1.93602 1.86125 1.81733 1.32935 1.54995 1.21294 1.64898 1.43905 1.21040 0.83145 0.96585 0.96741 1.19491 0.89097 0.95690 0.96580 1.20210 1.48952 0.90506 0.92756 0.90389 1.24898 0.93701 0.95071 0.98297 1.69878 1.46480 1.20333 1.16103 0.87229 0.80042 0.83260 0.81648 1.18997 1.21695 1.17315 1.22798 1.06662 1.01363 0.90985 1.23069 0.97281 0.99841 1.02585 1.20806 0.89515 0.93623 0.95921 1.21389 1.08737 0.95558 0.99550 0.91480 0.91236 0.90696 0.90480 0.91552 0.90294 0.91335 0.84371 0.83482 0.74239 0.91555 0.93841 0.92443 0.89587 0.90840 0.91262 0.89304 0.83915 0.84471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.26 9.17 37.16 0.34 -0.92 16 2 C 0.07 0.55 2.85 -26.73 -0.08 0.48 16 3 C -0.15 -0.84 9.56 37.16 0.36 -0.49 16 4 O -0.31 -3.20 9.80 -19.43 -0.19 -3.39 16 5 C 0.18 2.12 6.60 -39.22 -0.26 1.86 16 6 C -0.18 -2.05 9.99 -39.43 -0.39 -2.44 16 7 C 0.02 0.27 9.52 -39.60 -0.38 -0.11 16 8 C -0.71 -10.52 5.90 -39.56 -0.23 -10.75 16 9 S 2.69 48.50 5.73 -107.50 -0.62 47.89 16 10 O -0.97 -18.47 17.28 -57.17 -0.99 -19.46 16 11 O -0.95 -20.68 16.78 -57.17 -0.96 -21.64 16 12 N -1.09 -20.01 5.88 -10.61 -0.06 -20.07 16 13 C 0.15 2.98 5.66 -4.04 -0.02 2.95 16 14 C -0.01 -0.13 0.86 -155.67 -0.13 -0.27 16 15 C -0.49 -13.06 9.30 -34.44 -0.32 -13.38 16 16 H 0.08 2.27 8.06 -52.48 -0.42 1.85 16 17 C 0.08 2.38 5.46 -17.82 -0.10 2.28 16 18 N -0.89 -27.09 13.96 55.43 0.77 -26.31 16 19 Si 0.85 20.95 24.88 -169.99 -4.23 16.72 16 20 H -0.26 -6.58 7.02 56.52 0.40 -6.18 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 22 H -0.25 -5.54 5.83 56.52 0.33 -5.21 16 23 C -0.18 -3.36 9.96 -26.69 -0.27 -3.62 16 24 C -0.19 -3.71 8.21 -26.70 -0.22 -3.93 16 25 C 0.02 0.29 9.52 -39.60 -0.38 -0.09 16 26 C -0.23 -2.74 8.24 -39.43 -0.32 -3.07 16 27 H 0.07 0.53 6.89 -51.93 -0.36 0.18 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.55 6.32 -51.93 -0.33 0.22 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.15 1.65 7.61 -52.49 -0.40 1.25 16 36 H 0.42 7.28 8.69 -34.47 -0.30 6.98 16 37 H 0.07 1.43 4.43 -51.92 -0.23 1.20 16 38 H 0.04 0.72 8.09 -51.93 -0.42 0.30 16 39 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 40 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 43 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 44 H 0.14 1.95 7.61 -52.49 -0.40 1.55 16 45 H 0.14 1.27 5.42 -52.48 -0.28 0.99 16 LS Contribution 377.80 15.07 5.69 5.69 Total: -1.00 -34.03 377.80 -9.56 -43.60 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -6.58 Total: 8.48 kcal Atomic # 6 Polarization: -29.10 SS G_CDS: -2.40 Total: -31.50 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 0.71 Total: -46.38 kcal Atomic # 8 Polarization: -42.35 SS G_CDS: -2.14 Total: -44.49 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.23 Total: 16.72 kcal Atomic # 16 Polarization: 48.50 SS G_CDS: -0.62 Total: 47.89 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.03 -9.56 -43.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429982750.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.510 kcal (2) G-P(sol) polarization free energy of solvation -34.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds