Wall clock time and date at job start Tue Mar 31 2020 23:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47153 * 2 1 4 4 O 1.42896 * 109.46949 * 120.00061 * 2 1 3 5 5 C 1.35900 * 117.00252 * 84.85490 * 4 2 1 6 6 C 1.38736 * 120.05753 * 174.38943 * 5 4 2 7 7 C 1.38144 * 119.94647 * 180.02562 * 6 5 4 8 8 C 1.38272 * 120.05373 * 0.02562 * 7 6 5 9 9 S 1.76199 * 119.94260 * 179.97438 * 8 7 6 10 10 O 1.42097 * 106.40170 * 336.46429 * 9 8 7 11 11 O 1.42097 * 106.40191 * 203.54064 * 9 8 7 12 12 N 1.65603 * 107.21495 * 90.00215 * 9 8 7 13 13 C 1.46499 * 120.00217 * 62.31626 * 12 9 8 14 14 C 1.52997 * 109.47617 * 160.11865 * 13 12 9 15 15 C 1.50699 * 115.54621 * 294.89219 * 14 13 12 16 16 H 1.08004 * 119.99566 * 116.58062 * 15 14 13 17 17 C 1.37879 * 120.00400 * 296.30692 * 15 14 13 18 18 N 1.31513 * 119.99841 * 174.28127 * 17 15 14 19 19 Si 1.86799 * 119.99723 * 354.27893 * 17 15 14 20 20 H 1.48503 * 109.47032 * 93.97552 * 19 17 15 21 21 H 1.48495 * 109.47025 * 213.97294 * 19 17 15 22 22 H 1.48500 * 109.47255 * 333.97866 * 19 17 15 23 23 C 1.53001 * 117.49763 * 80.56061 * 14 13 12 24 24 C 1.52994 * 117.50013 * 149.22171 * 14 13 12 25 25 C 1.38265 * 120.11144 * 0.26065 * 8 7 6 26 26 C 1.38149 * 120.05315 * 359.44949 * 25 8 7 27 27 H 1.08999 * 109.47203 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46910 * 300.00342 * 1 2 3 29 29 H 1.09004 * 109.47461 * 60.00238 * 1 2 3 30 30 H 1.08998 * 109.46910 * 239.99658 * 2 1 3 31 31 H 1.09004 * 109.46977 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46797 * 299.99443 * 3 2 1 33 33 H 1.08998 * 109.47491 * 60.00014 * 3 2 1 34 34 H 1.07998 * 120.02701 * 359.97438 * 6 5 4 35 35 H 1.07997 * 119.97552 * 179.97438 * 7 6 5 36 36 H 0.96998 * 119.99785 * 242.30276 * 12 9 8 37 37 H 1.09007 * 109.47312 * 40.11107 * 13 12 9 38 38 H 1.09005 * 109.47017 * 280.12109 * 13 12 9 39 39 H 0.96999 * 119.99480 * 180.02562 * 18 17 15 40 40 H 1.08997 * 117.49679 * 215.00280 * 23 14 13 41 41 H 1.08998 * 117.50186 * 0.02693 * 23 14 13 42 42 H 1.09006 * 117.50163 * 359.97438 * 24 14 13 43 43 H 1.09007 * 117.49851 * 144.97120 * 24 14 13 44 44 H 1.07998 * 119.97359 * 179.70572 * 25 8 7 45 45 H 1.08006 * 120.02552 * 180.25632 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1667 5 6 2.1096 -2.0270 1.0989 6 6 2.6734 -2.7345 2.1507 7 6 2.7777 -4.1101 2.0791 8 6 2.3212 -4.7819 0.9601 9 16 2.4564 -6.5365 0.8715 10 8 3.5094 -6.9027 1.7525 11 8 2.4468 -6.8704 -0.5096 12 7 1.0673 -7.1681 1.5150 13 6 -0.2252 -6.8882 0.8848 14 6 -1.2472 -7.9363 1.3294 15 6 -0.9680 -9.3476 0.8805 16 1 -0.7734 -10.1182 1.6117 17 6 -0.9667 -9.6561 -0.4633 18 7 -0.6133 -10.8587 -0.8615 19 14 -1.4667 -8.3660 -1.7182 20 1 -0.2560 -7.6660 -2.2179 21 1 -2.1624 -9.0233 -2.8536 22 1 -2.3791 -7.3829 -1.0808 23 6 -1.9030 -7.7472 2.6988 24 6 -2.7110 -7.5010 1.4222 25 6 1.7643 -4.0786 -0.0921 26 6 1.6523 -2.7034 -0.0227 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6767 1.9563 0.8899 34 1 3.0312 -2.2101 3.0245 35 1 3.2169 -4.6613 2.8974 36 1 1.1096 -7.7236 2.3090 37 1 -0.1163 -6.9238 -0.1993 38 1 -0.5678 -5.8973 1.1830 39 1 -0.6120 -11.0756 -1.8069 40 1 -2.1325 -8.6435 3.2749 41 1 -1.6067 -6.8758 3.2827 42 1 -2.9459 -6.4677 1.1668 43 1 -3.4721 -8.2352 1.1581 44 1 1.4129 -4.6051 -0.9670 45 1 1.2134 -2.1548 -0.8431 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429982750.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:21:52 Heat of formation + Delta-G solvation = -86.733806 kcal Electronic energy + Delta-G solvation = -27849.717293 eV Core-core repulsion = 23959.506567 eV Total energy + Delta-G solvation = -3890.210726 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.46760 -39.07429 -38.84741 -38.29646 -36.95026 -34.91277 -34.31906 -34.21124 -32.18145 -31.13555 -28.25686 -28.19805 -26.61003 -24.73334 -24.08918 -23.13829 -22.01586 -21.06041 -20.44983 -19.59434 -18.85509 -18.68540 -18.01996 -17.37235 -16.90686 -16.65432 -16.50999 -15.99237 -15.76988 -15.28518 -15.07821 -14.98489 -14.88722 -14.59538 -14.46669 -14.27481 -14.05907 -13.75834 -13.37728 -13.24961 -13.21977 -13.18968 -13.13455 -12.93683 -12.86385 -12.64367 -12.28251 -12.09957 -12.03003 -12.02199 -11.83778 -11.67922 -11.45950 -10.94351 -10.61567 -10.38729 -10.23381 -10.17686 -9.68833 -8.26508 -6.30037 -0.63062 -0.21287 0.16112 1.37676 1.40147 1.50613 1.96200 2.06342 2.40871 2.41874 2.78306 3.04470 3.29238 3.40499 3.58455 3.73218 3.81003 3.93205 4.04843 4.09158 4.12751 4.23936 4.29004 4.40102 4.49842 4.50388 4.55877 4.65275 4.70704 4.76509 4.82102 4.85054 4.95682 4.99197 5.00678 5.04352 5.07207 5.20040 5.22501 5.26051 5.48044 5.52165 5.60527 5.74124 6.17917 6.23874 6.35163 6.77030 7.37964 8.89070 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013728 B = 0.003670 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.174020 B = 7628.317664 C = 8275.002687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.062 3.938 3 C -0.146 4.146 4 O -0.311 6.311 5 C 0.185 3.815 6 C -0.175 4.175 7 C 0.017 3.983 8 C -0.713 4.713 9 S 2.699 3.301 10 O -0.988 6.988 11 O -1.001 7.001 12 N -1.095 6.095 13 C 0.153 3.847 14 C -0.041 4.041 15 C -0.477 4.477 16 H 0.034 0.966 17 C 0.021 3.979 18 N -0.950 5.950 19 Si 0.904 3.096 20 H -0.273 1.273 21 H -0.297 1.297 22 H -0.205 1.205 23 C -0.158 4.158 24 C -0.180 4.180 25 C 0.006 3.994 26 C -0.228 4.228 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.162 0.838 35 H 0.159 0.841 36 H 0.424 0.576 37 H 0.045 0.955 38 H 0.087 0.913 39 H 0.262 0.738 40 H 0.076 0.924 41 H 0.110 0.890 42 H 0.104 0.896 43 H 0.076 0.924 44 H 0.139 0.861 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.205 28.125 3.842 28.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.006 3.994 3 C -0.203 4.203 4 O -0.224 6.224 5 C 0.138 3.862 6 C -0.194 4.194 7 C -0.002 4.002 8 C -0.804 4.804 9 S 2.793 3.207 10 O -0.978 6.978 11 O -0.991 6.991 12 N -0.855 5.855 13 C 0.027 3.973 14 C -0.043 4.043 15 C -0.515 4.515 16 H 0.053 0.947 17 C -0.176 4.176 18 N -0.589 5.589 19 Si 0.728 3.272 20 H -0.199 1.199 21 H -0.225 1.225 22 H -0.126 1.126 23 C -0.195 4.195 24 C -0.218 4.218 25 C -0.013 4.013 26 C -0.247 4.247 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.112 0.888 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.117 0.883 33 H 0.087 0.913 34 H 0.180 0.820 35 H 0.177 0.823 36 H 0.260 0.740 37 H 0.063 0.937 38 H 0.105 0.895 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.128 0.872 42 H 0.122 0.878 43 H 0.095 0.905 44 H 0.157 0.843 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 2.954 27.789 3.349 28.146 hybrid contribution -0.384 -0.367 -0.683 0.865 sum 2.570 27.422 2.667 27.671 Atomic orbital electron populations 1.22420 0.93908 1.03190 1.04370 1.22889 0.95373 0.94608 0.86487 1.21890 1.02056 0.92073 1.04270 1.86168 1.80022 1.15463 1.40772 1.19403 0.90055 0.83249 0.93485 1.20792 1.05201 0.93223 1.00191 1.20940 0.90339 0.94236 0.94725 1.30400 1.20295 1.24797 1.04926 1.01208 0.72297 0.74591 0.72630 1.93507 1.53998 1.83621 1.66714 1.93542 1.86648 1.83528 1.35383 1.54946 1.21079 1.65759 1.43760 1.21015 0.82769 0.97849 0.95693 1.19398 0.91390 0.93445 1.00066 1.20456 1.46741 0.92650 0.91629 0.94747 1.25750 0.94308 0.96852 1.00713 1.70044 1.49777 1.22945 1.16182 0.86403 0.80096 0.81585 0.79102 1.19921 1.22470 1.12605 1.22867 1.04190 1.02384 0.90058 1.23120 0.94770 1.01325 1.02613 1.20889 0.90150 0.94667 0.95633 1.21587 1.08111 0.94636 1.00346 0.92455 0.91387 0.88761 0.89865 0.91811 0.88271 0.91348 0.82003 0.82309 0.73992 0.93665 0.89457 0.92896 0.90501 0.87155 0.87793 0.90549 0.84313 0.82093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.85 9.17 71.98 0.66 -1.19 16 2 C 0.06 0.72 2.85 30.59 0.09 0.81 16 3 C -0.15 -1.17 9.56 71.98 0.69 -0.48 16 4 O -0.31 -5.41 9.80 -92.43 -0.91 -6.31 16 5 C 0.19 3.72 6.60 22.51 0.15 3.87 16 6 C -0.17 -3.50 9.99 22.37 0.22 -3.27 16 7 C 0.02 0.40 9.52 22.26 0.21 0.61 16 8 C -0.71 -20.05 5.90 22.28 0.13 -19.91 16 9 S 2.70 97.81 5.73 -56.49 -0.32 97.49 16 10 O -0.99 -38.19 17.28 -128.00 -2.21 -40.40 16 11 O -1.00 -44.74 16.78 -128.00 -2.15 -46.89 16 12 N -1.09 -39.66 5.88 -187.48 -1.10 -40.76 16 13 C 0.15 5.71 5.66 86.38 0.49 6.20 16 14 C -0.04 -1.70 0.86 -52.93 -0.05 -1.74 16 15 C -0.48 -26.27 9.30 25.60 0.24 -26.03 16 16 H 0.03 2.12 8.06 -2.91 -0.02 2.10 16 17 C 0.02 1.24 5.46 84.66 0.46 1.71 16 18 N -0.95 -60.81 13.96 21.45 0.30 -60.51 16 19 Si 0.90 43.64 24.88 68.60 1.71 45.34 16 20 H -0.27 -13.50 7.02 99.48 0.70 -12.80 16 21 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 22 H -0.20 -8.26 5.83 99.48 0.58 -7.68 16 23 C -0.16 -5.37 9.96 30.62 0.30 -5.07 16 24 C -0.18 -6.40 8.21 30.62 0.25 -6.15 16 25 C 0.01 0.16 9.52 22.26 0.21 0.37 16 26 C -0.23 -4.66 8.24 22.37 0.18 -4.47 16 27 H 0.06 0.71 6.89 -2.39 -0.02 0.69 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.08 0.89 6.32 -2.39 -0.02 0.87 16 31 H 0.06 0.55 8.14 -2.38 -0.02 0.54 16 32 H 0.10 0.40 8.14 -2.39 -0.02 0.39 16 33 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.16 2.42 8.06 -2.91 -0.02 2.39 16 35 H 0.16 3.24 7.61 -2.91 -0.02 3.22 16 36 H 0.42 14.64 8.69 -96.75 -0.84 13.80 16 37 H 0.05 1.89 4.43 -2.38 -0.01 1.88 16 38 H 0.09 2.50 8.09 -2.38 -0.02 2.49 16 39 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 40 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 41 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 42 H 0.10 3.03 8.14 -2.38 -0.02 3.01 16 43 H 0.08 2.92 8.14 -2.38 -0.02 2.90 16 44 H 0.14 3.65 7.61 -2.91 -0.02 3.63 16 45 H 0.16 2.42 5.42 -2.91 -0.02 2.40 16 Total: -1.00 -77.67 377.80 -0.41 -78.07 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: 0.03 Total: 28.73 kcal Atomic # 6 Polarization: -59.01 SS G_CDS: 4.25 Total: -54.77 kcal Atomic # 7 Polarization: -100.47 SS G_CDS: -0.80 Total: -101.27 kcal Atomic # 8 Polarization: -88.34 SS G_CDS: -5.26 Total: -93.60 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.71 Total: 45.34 kcal Atomic # 16 Polarization: 97.81 SS G_CDS: -0.32 Total: 97.49 kcal Total: -77.67 -0.41 -78.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429982750.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.660 kcal (2) G-P(sol) polarization free energy of solvation -77.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds