Wall clock time and date at job start Tue Mar 31 2020 23:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35902 * 116.99832 * 2 1 4 4 C 1.38758 * 120.05682 * 0.20721 * 3 2 1 5 5 C 1.38120 * 119.94239 * 180.27785 * 4 3 2 6 6 C 1.38289 * 120.05645 * 359.76382 * 5 4 3 7 7 C 1.38239 * 120.11204 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.97475 * 179.97438 * 7 6 5 9 9 H 1.08996 * 109.47125 * 160.01830 * 8 7 6 10 10 C 1.52998 * 109.47324 * 280.02836 * 8 7 6 11 11 N 1.46500 * 109.46841 * 40.02138 * 8 7 6 12 12 S 1.65601 * 120.00232 * 144.99750 * 11 8 7 13 13 O 1.42097 * 104.27916 * 181.07393 * 12 11 8 14 14 O 1.42104 * 104.27600 * 308.93614 * 12 11 8 15 15 C 1.81401 * 104.44621 * 65.00073 * 12 11 8 16 16 C 1.53002 * 109.47027 * 172.69104 * 15 12 11 17 17 C 1.50688 * 115.55242 * 65.16087 * 16 15 12 18 18 H 1.08005 * 120.00389 * 264.90779 * 17 16 15 19 19 C 1.37880 * 120.00217 * 84.90964 * 17 16 15 20 20 N 1.31515 * 119.99809 * 352.85235 * 19 17 16 21 21 Si 1.86796 * 120.00170 * 172.85020 * 19 17 16 22 22 H 1.48499 * 109.47221 * 60.00358 * 21 19 17 23 23 H 1.48494 * 109.47319 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47082 * 299.99985 * 21 19 17 25 25 C 1.53002 * 117.49639 * 279.48966 * 16 15 12 26 26 C 1.53005 * 117.49518 * 210.83525 * 16 15 12 27 27 C 1.38174 * 120.05682 * 0.02562 * 7 6 5 28 28 H 1.09006 * 109.47217 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47413 * 299.99953 * 1 2 3 30 30 H 1.09005 * 109.47139 * 60.00094 * 1 2 3 31 31 H 1.07998 * 120.02714 * 0.02562 * 4 3 2 32 32 H 1.07997 * 119.97264 * 179.74956 * 5 4 3 33 33 H 1.07998 * 119.94049 * 179.97438 * 6 5 4 34 34 H 1.08996 * 109.47841 * 59.99432 * 10 8 7 35 35 H 1.08998 * 109.47041 * 180.02562 * 10 8 7 36 36 H 1.09002 * 109.46638 * 299.99350 * 10 8 7 37 37 H 0.97007 * 120.00352 * 325.00483 * 11 8 7 38 38 H 1.08995 * 109.47330 * 292.68879 * 15 12 11 39 39 H 1.09000 * 109.46898 * 52.68924 * 15 12 11 40 40 H 0.96998 * 120.00029 * 185.03891 * 20 19 17 41 41 H 1.08999 * 117.50100 * 0.02562 * 25 16 15 42 42 H 1.08996 * 117.50001 * 145.02309 * 25 16 15 43 43 H 1.09002 * 117.49552 * 214.97655 * 26 16 15 44 44 H 1.08996 * 117.50040 * 359.97174 * 26 16 15 45 45 H 1.08000 * 120.02453 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2913 2.3754 0.0043 5 6 1.9208 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0067 7 6 4.0559 2.5172 -0.0055 8 6 5.5607 2.5982 -0.0118 9 1 5.9768 1.6546 0.3411 10 6 6.0508 2.8714 -1.4352 11 7 5.9949 3.6839 0.8708 12 16 7.3923 3.5307 1.7461 13 8 7.4751 4.7395 2.4885 14 8 7.2601 2.2764 2.4007 15 6 8.7043 3.4607 0.4953 16 6 10.0693 3.5014 1.1853 17 6 10.3924 2.3156 2.0573 18 1 10.1996 2.3576 3.1191 19 6 10.9344 1.1770 1.4996 20 7 11.0392 1.0706 0.1930 21 14 11.5197 -0.2143 2.6000 22 1 10.3810 -0.7182 3.4089 23 1 12.0576 -1.3157 1.7616 24 1 12.5867 0.2851 3.5042 25 6 10.5972 4.8678 1.6269 26 6 11.2253 4.1560 0.4262 27 6 3.4310 1.2848 0.0003 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.2127 2.3204 0.0081 32 1 1.3339 4.5114 -0.0022 33 1 3.7920 4.6381 -0.0116 34 1 5.6347 3.8150 -1.7881 35 1 7.1392 2.9295 -1.4397 36 1 5.7278 2.0636 -2.0919 37 1 5.4638 4.4924 0.9427 38 1 8.6132 2.5367 -0.0755 39 1 8.6113 4.3137 -0.1768 40 1 11.3521 0.2421 -0.2026 41 1 9.9719 5.7378 1.4264 42 1 11.1785 4.9091 2.5480 43 1 12.2196 3.7292 0.5578 44 1 11.0134 4.5573 -0.5649 45 1 4.0206 0.3800 0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451087221.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:50 Heat of formation + Delta-G solvation = -84.981783 kcal Electronic energy + Delta-G solvation = -27773.428658 eV Core-core repulsion = 23883.293906 eV Total energy + Delta-G solvation = -3890.134752 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.18128 -39.16353 -38.55059 -37.94055 -36.81807 -36.57423 -34.07041 -32.31125 -31.09711 -30.22207 -29.51667 -28.10272 -27.48051 -24.59646 -23.62658 -22.96421 -21.77034 -21.46570 -20.25479 -19.17508 -18.48263 -18.24607 -17.32888 -16.98148 -16.80425 -16.68234 -16.64631 -16.59512 -15.95167 -15.56688 -15.36640 -14.88446 -14.67016 -14.40387 -14.30029 -13.81564 -13.70528 -13.55977 -13.26007 -13.11391 -13.09356 -12.94227 -12.89731 -12.84307 -12.70444 -12.43556 -12.41687 -12.21502 -12.19567 -11.95747 -11.85594 -11.64639 -11.52698 -10.87353 -10.64497 -10.50943 -9.86826 -9.82569 -9.16702 -8.18344 -6.32766 -0.52601 0.31572 0.47798 1.39313 1.41184 1.48313 2.00856 2.37772 2.40485 2.77706 2.94728 3.08935 3.40709 3.45814 3.59063 3.87087 3.96527 4.08804 4.14347 4.22505 4.30099 4.33008 4.35988 4.40668 4.47567 4.56625 4.57061 4.62097 4.67980 4.73902 4.83551 4.90158 5.00667 5.01062 5.12970 5.22735 5.30318 5.32328 5.46800 5.51191 5.61829 5.64039 5.72741 5.80088 6.15862 6.24347 6.46494 6.72741 7.39382 8.88217 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015093 B = 0.003328 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.774665 B = 8411.012845 C = 9373.621449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.341 6.341 3 C 0.116 3.884 4 C -0.209 4.209 5 C -0.075 4.075 6 C -0.155 4.155 7 C -0.050 4.050 8 C 0.181 3.819 9 H 0.081 0.919 10 C -0.171 4.171 11 N -1.107 6.107 12 S 2.619 3.381 13 O -0.994 6.994 14 O -0.997 6.997 15 C -0.548 4.548 16 C 0.011 3.989 17 C -0.538 4.538 18 H 0.046 0.954 19 C 0.046 3.954 20 N -0.888 5.888 21 Si 0.931 3.069 22 H -0.279 1.279 23 H -0.273 1.273 24 H -0.269 1.269 25 C -0.197 4.197 26 C -0.136 4.136 27 C -0.168 4.168 28 H 0.115 0.885 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.153 0.847 32 H 0.157 0.843 33 H 0.143 0.857 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.080 0.920 37 H 0.422 0.578 38 H 0.127 0.873 39 H 0.139 0.861 40 H 0.266 0.734 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.065 0.935 44 H 0.090 0.910 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.854 4.533 -7.327 22.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.255 6.255 3 C 0.070 3.930 4 C -0.228 4.228 5 C -0.093 4.093 6 C -0.173 4.173 7 C -0.051 4.051 8 C 0.074 3.926 9 H 0.099 0.901 10 C -0.229 4.229 11 N -0.868 5.868 12 S 2.717 3.283 13 O -0.984 6.984 14 O -0.986 6.986 15 C -0.681 4.681 16 C 0.009 3.991 17 C -0.576 4.576 18 H 0.064 0.936 19 C -0.158 4.158 20 N -0.524 5.524 21 Si 0.756 3.244 22 H -0.205 1.205 23 H -0.197 1.197 24 H -0.193 1.193 25 C -0.235 4.235 26 C -0.175 4.175 27 C -0.188 4.188 28 H 0.133 0.867 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.171 0.829 32 H 0.175 0.825 33 H 0.160 0.840 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.260 0.740 38 H 0.145 0.855 39 H 0.157 0.843 40 H 0.075 0.925 41 H 0.118 0.882 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.109 0.891 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -20.524 4.019 -6.521 21.907 hybrid contribution 0.417 -0.773 0.086 0.883 sum -20.107 3.246 -6.435 21.360 Atomic orbital electron populations 1.23346 0.76325 1.05489 1.02399 1.86059 1.23634 1.27051 1.88733 1.19110 0.92023 0.85163 0.96663 1.21551 1.01231 0.91818 1.08195 1.21287 0.94144 0.98094 0.95801 1.21115 0.94436 0.98115 1.03668 1.19637 0.94183 0.93229 0.98086 1.19754 0.91497 0.89864 0.91484 0.90055 1.22424 1.02238 1.04318 0.93945 1.55609 1.41436 1.27407 1.62339 1.04469 0.74968 0.72827 0.76019 1.93462 1.86929 1.47943 1.70074 1.93486 1.85566 1.46297 1.73289 1.29940 1.12335 1.10697 1.15126 1.18387 0.89955 0.91524 0.99243 1.20683 1.44003 0.99384 0.93506 0.93585 1.25465 0.94345 0.99801 0.96140 1.69997 1.45539 1.26759 1.10094 0.86028 0.78918 0.79695 0.79728 1.20466 1.19724 1.19348 1.23244 1.05273 0.95874 0.99061 1.22507 0.97609 1.02771 0.94601 1.20404 0.92446 0.98290 1.07610 0.86669 0.91705 0.91254 0.82926 0.82499 0.83967 0.89541 0.91563 0.90137 0.74047 0.85488 0.84309 0.92503 0.88162 0.90170 0.91646 0.89135 0.85889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -7.55 10.50 -92.45 -0.97 -8.52 16 3 C 0.12 2.69 6.69 22.51 0.15 2.84 16 4 C -0.21 -3.71 9.04 22.37 0.20 -3.51 16 5 C -0.08 -1.25 10.04 22.25 0.22 -1.03 16 6 C -0.15 -3.08 9.15 22.28 0.20 -2.88 16 7 C -0.05 -1.24 4.95 -19.88 -0.10 -1.34 16 8 C 0.18 4.98 3.01 44.24 0.13 5.11 16 9 H 0.08 2.61 7.34 -2.39 -0.02 2.60 16 10 C -0.17 -3.82 9.46 71.98 0.68 -3.14 16 11 N -1.11 -32.17 5.31 -172.53 -0.92 -33.09 16 12 S 2.62 105.65 5.16 -56.49 -0.29 105.36 16 13 O -0.99 -43.13 18.08 -127.65 -2.31 -45.44 16 14 O -1.00 -49.50 17.12 -127.65 -2.19 -51.69 16 15 C -0.55 -21.98 4.82 71.98 0.35 -21.63 16 16 C 0.01 0.53 1.33 -52.93 -0.07 0.46 16 17 C -0.54 -29.97 8.23 25.60 0.21 -29.76 16 18 H 0.05 2.68 7.82 -2.91 -0.02 2.65 16 19 C 0.05 2.52 5.38 84.66 0.46 2.97 16 20 N -0.89 -48.49 12.96 21.45 0.28 -48.21 16 21 Si 0.93 44.30 29.55 68.60 2.03 46.33 16 22 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 23 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 25 C -0.20 -8.41 9.96 30.62 0.30 -8.10 16 26 C -0.14 -5.98 9.47 30.62 0.29 -5.70 16 27 C -0.17 -4.46 9.61 22.37 0.21 -4.25 16 28 H 0.12 0.95 8.14 -2.38 -0.02 0.93 16 29 H 0.06 0.64 7.65 -2.39 -0.02 0.62 16 30 H 0.07 0.61 7.67 -2.38 -0.02 0.59 16 31 H 0.15 1.78 6.30 -2.91 -0.02 1.76 16 32 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 33 H 0.14 2.22 6.81 -2.91 -0.02 2.20 16 34 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 1.60 6.02 -2.39 -0.01 1.59 16 36 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.42 9.82 7.04 -96.74 -0.68 9.14 16 38 H 0.13 5.33 7.26 -2.39 -0.02 5.32 16 39 H 0.14 4.37 8.09 -2.39 -0.02 4.35 16 40 H 0.27 13.85 8.32 -92.71 -0.77 13.08 16 41 H 0.10 3.73 8.14 -2.39 -0.02 3.71 16 42 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 43 H 0.06 3.12 8.14 -2.39 -0.02 3.10 16 44 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 45 H 0.12 3.38 8.04 -2.91 -0.02 3.35 16 Total: -1.00 -73.83 384.36 0.31 -73.51 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: 0.32 Total: 30.36 kcal Atomic # 6 Polarization: -72.97 SS G_CDS: 4.36 Total: -68.61 kcal Atomic # 7 Polarization: -80.66 SS G_CDS: -0.64 Total: -81.30 kcal Atomic # 8 Polarization: -100.19 SS G_CDS: -5.46 Total: -105.65 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: 105.65 SS G_CDS: -0.29 Total: 105.36 kcal Total: -73.83 0.31 -73.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451087221.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.468 kcal (2) G-P(sol) polarization free energy of solvation -73.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds