Wall clock time and date at job start Tue Mar 31 2020 23:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35906 * 117.00030 * 2 1 4 4 C 1.38751 * 120.05220 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94303 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05477 * 359.75191 * 5 4 3 7 7 C 1.38249 * 120.11272 * 0.50465 * 6 5 4 8 8 C 1.50700 * 119.97300 * 179.76917 * 7 6 5 9 9 H 1.08996 * 109.46611 * 199.72280 * 8 7 6 10 10 C 1.53000 * 109.47348 * 79.72546 * 8 7 6 11 11 N 1.46494 * 109.47155 * 319.72373 * 8 7 6 12 12 S 1.65603 * 120.00271 * 215.00207 * 11 8 7 13 13 O 1.42108 * 104.27347 * 308.93209 * 12 11 8 14 14 O 1.42095 * 104.27847 * 181.07155 * 12 11 8 15 15 C 1.81398 * 104.44856 * 64.99669 * 12 11 8 16 16 C 1.53002 * 109.47141 * 185.98452 * 15 12 11 17 17 C 1.50700 * 115.54826 * 294.74815 * 16 15 12 18 18 H 1.07989 * 120.00382 * 99.51702 * 17 16 15 19 19 C 1.37885 * 119.99745 * 279.23806 * 17 16 15 20 20 N 1.31515 * 119.99749 * 355.39221 * 19 17 16 21 21 Si 1.86801 * 119.99779 * 175.39091 * 19 17 16 22 22 H 1.48496 * 109.47285 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47092 * 120.00015 * 21 19 17 24 24 H 1.48505 * 109.46902 * 240.00096 * 21 19 17 25 25 C 1.52998 * 117.52005 * 80.45015 * 16 15 12 26 26 C 1.52993 * 60.00192 * 107.47800 * 25 16 15 27 27 C 1.38163 * 120.04983 * 359.49309 * 7 6 5 28 28 H 1.09001 * 109.47106 * 179.97438 * 1 2 3 29 29 H 1.08989 * 109.47246 * 299.99980 * 1 2 3 30 30 H 1.09002 * 109.46797 * 60.00064 * 1 2 3 31 31 H 1.07997 * 120.03255 * 0.02562 * 4 3 2 32 32 H 1.08000 * 119.97694 * 180.02562 * 5 4 3 33 33 H 1.07999 * 119.94499 * 180.27639 * 6 5 4 34 34 H 1.08992 * 109.47249 * 179.97438 * 10 8 7 35 35 H 1.08999 * 109.46820 * 300.00383 * 10 8 7 36 36 H 1.09008 * 109.46861 * 59.99640 * 10 8 7 37 37 H 0.97005 * 120.00456 * 35.00010 * 11 8 7 38 38 H 1.09003 * 109.47284 * 65.98433 * 15 12 11 39 39 H 1.09004 * 109.47414 * 305.98455 * 15 12 11 40 40 H 0.97005 * 119.99264 * 185.00364 * 20 19 17 41 41 H 1.08997 * 117.49903 * 214.97522 * 25 16 15 42 42 H 1.09004 * 117.49722 * 359.97438 * 25 16 15 43 43 H 1.09003 * 117.50355 * 252.51019 * 26 25 16 44 44 H 1.09007 * 117.51416 * 107.47698 * 26 25 16 45 45 H 1.08010 * 120.02640 * 180.27544 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3018 3.6758 0.0063 7 6 4.0560 2.5172 0.0004 8 6 5.5608 2.5983 0.0008 9 1 5.9756 1.6537 -0.3508 10 6 6.0562 2.8755 1.4216 11 7 5.9917 3.6813 -0.8866 12 16 7.3859 3.5257 -1.7666 13 8 8.3640 3.1446 -0.8088 14 8 7.4926 4.7533 -2.4741 15 6 7.0489 2.1588 -2.9105 16 6 8.3231 1.8161 -3.6851 17 6 8.8296 2.8913 -4.6116 18 1 9.6390 3.5349 -4.3005 19 6 8.2633 3.0495 -5.8588 20 7 7.3443 2.2060 -6.2755 21 14 8.8016 4.4619 -6.9565 22 1 9.8414 5.2614 -6.2604 23 1 9.3589 3.9206 -8.2220 24 1 7.6327 5.3261 -7.2600 25 6 9.3633 0.9409 -2.9830 26 6 8.5168 0.3615 -4.1180 27 6 3.4311 1.2849 -0.0001 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2128 2.3204 0.0014 32 1 1.3339 4.5114 0.0019 33 1 3.7921 4.6381 0.0112 34 1 7.1446 2.9337 1.4219 35 1 5.6413 3.8201 1.7732 36 1 5.7356 2.0696 2.0819 37 1 5.4603 4.4897 -0.9588 38 1 6.2670 2.4548 -3.6100 39 1 6.7204 1.2857 -2.3467 40 1 6.9984 2.2733 -7.1792 41 1 10.4140 1.1429 -3.1911 42 1 9.1402 0.6095 -1.9688 43 1 7.7367 -0.3514 -3.8508 44 1 9.0104 0.1822 -5.0733 45 1 4.0207 0.3799 -0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451087222.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:55 Heat of formation + Delta-G solvation = -62.499213 kcal Electronic energy + Delta-G solvation = -27893.537385 eV Core-core repulsion = 24004.377550 eV Total energy + Delta-G solvation = -3889.159835 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.38864 -38.30247 -36.73580 -36.27742 -35.56536 -35.04991 -32.02472 -31.40270 -30.21230 -28.94111 -28.17267 -27.49880 -25.44004 -23.68470 -22.81334 -21.17427 -20.84770 -19.74420 -18.66357 -18.20867 -17.02659 -16.49666 -16.41910 -16.03775 -15.95551 -15.63666 -15.01970 -14.70744 -14.47514 -14.37362 -13.79889 -13.74042 -13.54601 -13.50827 -13.09823 -12.75214 -12.52760 -12.24074 -11.99014 -11.80957 -11.76330 -11.51133 -11.27646 -11.23815 -11.15018 -11.14625 -11.00994 -10.92703 -10.74693 -10.53569 -10.42518 -10.10201 -9.68827 -9.33095 -9.02266 -8.96706 -8.54401 -8.36211 -8.06494 -6.11136 -4.22949 1.01967 1.18772 1.29839 3.02598 3.30611 3.38842 3.40275 3.47159 3.64305 4.39639 4.42203 4.58674 4.62226 4.79595 4.87086 4.87537 4.91079 5.03033 5.13198 5.14912 5.18968 5.22272 5.29807 5.36248 5.45287 5.46706 5.70150 5.78396 5.87911 5.97452 6.08981 6.11279 6.24309 6.27899 6.31068 6.39596 6.52075 6.57193 6.65490 6.74769 7.02194 7.19697 7.23662 7.26479 7.44832 7.82619 8.22408 8.83131 9.48724 10.95841 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013086 B = 0.003491 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.099457 B = 8019.056065 C = 8465.936745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.128 3.872 4 C -0.211 4.211 5 C -0.078 4.078 6 C -0.145 4.145 7 C -0.044 4.044 8 C 0.193 3.807 9 H 0.092 0.908 10 C -0.166 4.166 11 N -1.126 6.126 12 S 2.606 3.394 13 O -0.969 6.969 14 O -0.951 6.951 15 C -0.553 4.553 16 C 0.041 3.959 17 C -0.514 4.514 18 H 0.069 0.931 19 C 0.080 3.920 20 N -0.874 5.874 21 Si 0.892 3.108 22 H -0.267 1.267 23 H -0.284 1.284 24 H -0.280 1.280 25 C -0.207 4.207 26 C -0.139 4.139 27 C -0.143 4.143 28 H 0.099 0.901 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.411 0.589 38 H 0.133 0.867 39 H 0.097 0.903 40 H 0.262 0.738 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.087 0.913 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.304 -2.250 14.188 20.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.083 3.917 4 C -0.230 4.230 5 C -0.096 4.096 6 C -0.164 4.164 7 C -0.046 4.046 8 C 0.085 3.915 9 H 0.110 0.890 10 C -0.224 4.224 11 N -0.882 5.882 12 S 2.703 3.297 13 O -0.959 6.959 14 O -0.941 6.941 15 C -0.687 4.687 16 C 0.039 3.961 17 C -0.551 4.551 18 H 0.087 0.913 19 C -0.125 4.125 20 N -0.510 5.510 21 Si 0.719 3.281 22 H -0.191 1.191 23 H -0.210 1.210 24 H -0.205 1.205 25 C -0.245 4.245 26 C -0.178 4.178 27 C -0.162 4.162 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.144 0.856 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.245 0.755 38 H 0.151 0.849 39 H 0.116 0.884 40 H 0.072 0.928 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.106 0.894 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.506 -2.041 14.207 19.708 hybrid contribution -1.014 0.599 -1.080 1.598 sum -14.520 -1.442 13.127 19.627 Atomic orbital electron populations 1.23044 0.78464 1.03908 1.01291 1.86081 1.21313 1.26933 1.88731 1.18950 0.92192 0.84162 0.96372 1.21219 0.99924 0.92460 1.09382 1.20903 0.94450 0.97004 0.97208 1.20858 0.93647 0.98198 1.03674 1.19807 0.95191 0.92584 0.97027 1.19555 0.89797 0.90537 0.91630 0.88984 1.22316 1.03289 1.02184 0.94650 1.56217 1.46649 1.26289 1.59087 1.05205 0.72739 0.77093 0.74652 1.93498 1.57428 1.85166 1.59831 1.93550 1.84426 1.41959 1.74141 1.29986 1.09450 1.15861 1.13359 1.18277 0.88735 0.92458 0.96654 1.20581 1.19113 1.15452 0.99957 0.91333 1.24970 0.93917 0.95795 0.97810 1.70011 1.27674 1.35832 1.17445 0.86516 0.79073 0.82578 0.79941 1.19116 1.20977 1.20550 1.23159 0.97597 1.07774 0.95923 1.22540 1.00956 0.96938 0.97386 1.20272 0.91469 0.98155 1.06352 0.88270 0.92745 0.92618 0.85609 0.85680 0.85681 0.90089 0.92025 0.91622 0.75526 0.84900 0.88429 0.92831 0.89585 0.90688 0.91654 0.89447 0.84810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.49 10.50 -19.45 -0.20 -3.69 16 3 C 0.13 1.49 6.69 -39.22 -0.26 1.23 16 4 C -0.21 -2.12 9.04 -39.43 -0.36 -2.48 16 5 C -0.08 -0.77 10.04 -39.61 -0.40 -1.17 16 6 C -0.15 -1.60 9.15 -39.56 -0.36 -1.96 16 7 C -0.04 -0.54 4.95 -104.65 -0.52 -1.05 16 8 C 0.19 2.49 2.88 -69.09 -0.20 2.29 16 9 H 0.09 1.15 6.91 -51.93 -0.36 0.79 16 10 C -0.17 -1.94 9.49 37.16 0.35 -1.59 16 11 N -1.13 -16.79 5.31 -5.89 -0.03 -16.82 16 12 S 2.61 52.18 5.12 -107.50 -0.55 51.63 16 13 O -0.97 -20.63 17.11 -57.54 -0.98 -21.62 16 14 O -0.95 -22.60 17.74 -57.54 -1.02 -23.62 16 15 C -0.55 -11.65 5.86 37.16 0.22 -11.44 16 16 C 0.04 1.00 1.34 -155.66 -0.21 0.79 16 17 C -0.51 -14.16 8.16 -34.44 -0.28 -14.44 16 18 H 0.07 1.93 7.82 -52.49 -0.41 1.52 16 19 C 0.08 2.20 5.44 -17.82 -0.10 2.11 16 20 N -0.87 -24.31 12.85 55.43 0.71 -23.59 16 21 Si 0.89 21.74 29.54 -169.99 -5.02 16.71 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 C -0.21 -4.54 9.95 -26.74 -0.27 -4.81 16 26 C -0.14 -3.18 9.39 -26.73 -0.25 -3.43 16 27 C -0.14 -1.73 9.61 -39.44 -0.38 -2.11 16 28 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.30 7.66 -51.93 -0.40 -0.10 16 30 H 0.06 0.34 7.66 -51.93 -0.40 -0.05 16 31 H 0.13 0.97 6.30 -52.49 -0.33 0.64 16 32 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 33 H 0.13 1.21 6.83 -52.49 -0.36 0.85 16 34 H 0.08 1.08 7.42 -51.93 -0.39 0.69 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16 37 H 0.41 5.38 7.05 -34.47 -0.24 5.14 16 38 H 0.13 2.96 8.14 -51.92 -0.42 2.53 16 39 H 0.10 1.72 7.24 -51.92 -0.38 1.34 16 40 H 0.26 6.93 8.32 -40.82 -0.34 6.59 16 41 H 0.09 1.87 8.14 -51.93 -0.42 1.44 16 42 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 43 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 45 H 0.13 1.48 8.04 -52.48 -0.42 1.06 16 LS Contribution 385.76 15.07 5.81 5.81 Total: -1.00 -33.76 385.76 -9.92 -43.69 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -6.62 Total: 8.38 kcal Atomic # 6 Polarization: -34.86 SS G_CDS: -2.02 Total: -36.88 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: 0.68 Total: -40.42 kcal Atomic # 8 Polarization: -46.72 SS G_CDS: -2.21 Total: -48.93 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 52.18 SS G_CDS: -0.55 Total: 51.63 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.76 -9.92 -43.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451087222.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.814 kcal (2) G-P(sol) polarization free energy of solvation -33.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds