Wall clock time and date at job start Tue Mar 31 2020 23:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35906 * 117.00030 * 2 1 4 4 C 1.38751 * 120.05220 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94303 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.05477 * 359.75191 * 5 4 3 7 7 C 1.38249 * 120.11272 * 0.50465 * 6 5 4 8 8 C 1.50700 * 119.97300 * 179.76917 * 7 6 5 9 9 H 1.08996 * 109.46611 * 199.72280 * 8 7 6 10 10 C 1.53000 * 109.47348 * 79.72546 * 8 7 6 11 11 N 1.46494 * 109.47155 * 319.72373 * 8 7 6 12 12 S 1.65603 * 120.00271 * 215.00207 * 11 8 7 13 13 O 1.42108 * 104.27347 * 308.93209 * 12 11 8 14 14 O 1.42095 * 104.27847 * 181.07155 * 12 11 8 15 15 C 1.81398 * 104.44856 * 64.99669 * 12 11 8 16 16 C 1.53002 * 109.47141 * 185.98452 * 15 12 11 17 17 C 1.50700 * 115.54826 * 294.74815 * 16 15 12 18 18 H 1.07989 * 120.00382 * 99.51702 * 17 16 15 19 19 C 1.37885 * 119.99745 * 279.23806 * 17 16 15 20 20 N 1.31515 * 119.99749 * 355.39221 * 19 17 16 21 21 Si 1.86801 * 119.99779 * 175.39091 * 19 17 16 22 22 H 1.48496 * 109.47285 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47092 * 120.00015 * 21 19 17 24 24 H 1.48505 * 109.46902 * 240.00096 * 21 19 17 25 25 C 1.52998 * 117.52005 * 80.45015 * 16 15 12 26 26 C 1.52993 * 60.00192 * 107.47800 * 25 16 15 27 27 C 1.38163 * 120.04983 * 359.49309 * 7 6 5 28 28 H 1.09001 * 109.47106 * 179.97438 * 1 2 3 29 29 H 1.08989 * 109.47246 * 299.99980 * 1 2 3 30 30 H 1.09002 * 109.46797 * 60.00064 * 1 2 3 31 31 H 1.07997 * 120.03255 * 0.02562 * 4 3 2 32 32 H 1.08000 * 119.97694 * 180.02562 * 5 4 3 33 33 H 1.07999 * 119.94499 * 180.27639 * 6 5 4 34 34 H 1.08992 * 109.47249 * 179.97438 * 10 8 7 35 35 H 1.08999 * 109.46820 * 300.00383 * 10 8 7 36 36 H 1.09008 * 109.46861 * 59.99640 * 10 8 7 37 37 H 0.97005 * 120.00456 * 35.00010 * 11 8 7 38 38 H 1.09003 * 109.47284 * 65.98433 * 15 12 11 39 39 H 1.09004 * 109.47414 * 305.98455 * 15 12 11 40 40 H 0.97005 * 119.99264 * 185.00364 * 20 19 17 41 41 H 1.08997 * 117.49903 * 214.97522 * 25 16 15 42 42 H 1.09004 * 117.49722 * 359.97438 * 25 16 15 43 43 H 1.09003 * 117.50355 * 252.51019 * 26 25 16 44 44 H 1.09007 * 117.51416 * 107.47698 * 26 25 16 45 45 H 1.08010 * 120.02640 * 180.27544 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3018 3.6758 0.0063 7 6 4.0560 2.5172 0.0004 8 6 5.5608 2.5983 0.0008 9 1 5.9756 1.6537 -0.3508 10 6 6.0562 2.8755 1.4216 11 7 5.9917 3.6813 -0.8866 12 16 7.3859 3.5257 -1.7666 13 8 8.3640 3.1446 -0.8088 14 8 7.4926 4.7533 -2.4741 15 6 7.0489 2.1588 -2.9105 16 6 8.3231 1.8161 -3.6851 17 6 8.8296 2.8913 -4.6116 18 1 9.6390 3.5349 -4.3005 19 6 8.2633 3.0495 -5.8588 20 7 7.3443 2.2060 -6.2755 21 14 8.8016 4.4619 -6.9565 22 1 9.8414 5.2614 -6.2604 23 1 9.3589 3.9206 -8.2220 24 1 7.6327 5.3261 -7.2600 25 6 9.3633 0.9409 -2.9830 26 6 8.5168 0.3615 -4.1180 27 6 3.4311 1.2849 -0.0001 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2128 2.3204 0.0014 32 1 1.3339 4.5114 0.0019 33 1 3.7921 4.6381 0.0112 34 1 7.1446 2.9337 1.4219 35 1 5.6413 3.8201 1.7732 36 1 5.7356 2.0696 2.0819 37 1 5.4603 4.4897 -0.9588 38 1 6.2670 2.4548 -3.6100 39 1 6.7204 1.2857 -2.3467 40 1 6.9984 2.2733 -7.1792 41 1 10.4140 1.1429 -3.1911 42 1 9.1402 0.6095 -1.9688 43 1 7.7367 -0.3514 -3.8508 44 1 9.0104 0.1822 -5.0733 45 1 4.0207 0.3799 -0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451087222.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:54 Heat of formation + Delta-G solvation = -84.857122 kcal Electronic energy + Delta-G solvation = -27894.506897 eV Core-core repulsion = 24004.377550 eV Total energy + Delta-G solvation = -3890.129347 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.16891 -39.15229 -38.56005 -37.92788 -36.82640 -36.51748 -34.09194 -32.30798 -31.09707 -29.89862 -29.82309 -28.09785 -27.49602 -24.59305 -23.62437 -22.96117 -21.74143 -21.52882 -20.22170 -19.13802 -18.43182 -18.32692 -17.33761 -17.00327 -16.82203 -16.71840 -16.61521 -16.50055 -15.89491 -15.60121 -15.32184 -14.93469 -14.65803 -14.37778 -14.29579 -13.79466 -13.72096 -13.66472 -13.27581 -13.10405 -13.04729 -12.90405 -12.88021 -12.85943 -12.71118 -12.47001 -12.42659 -12.23704 -12.13890 -11.93087 -11.90396 -11.61875 -11.47881 -10.98038 -10.63874 -10.51310 -9.89581 -9.79805 -9.15501 -8.19221 -6.34977 -0.52031 0.31691 0.48919 1.35496 1.40363 1.51468 1.99210 2.38745 2.39256 2.78385 2.95903 3.07241 3.36175 3.47771 3.58491 3.85705 3.98417 4.00085 4.14168 4.21357 4.29351 4.35890 4.37184 4.41495 4.46473 4.52633 4.57547 4.63153 4.67192 4.75343 4.86111 4.92899 4.99808 5.01610 5.14531 5.23240 5.32093 5.36270 5.45112 5.48388 5.62316 5.64729 5.72436 5.78939 6.11085 6.22742 6.47076 6.72237 7.37886 8.87400 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013086 B = 0.003491 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.099457 B = 8019.056065 C = 8465.936745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.115 3.885 4 C -0.211 4.211 5 C -0.078 4.078 6 C -0.157 4.157 7 C -0.052 4.052 8 C 0.185 3.815 9 H 0.096 0.904 10 C -0.164 4.164 11 N -1.111 6.111 12 S 2.626 3.374 13 O -0.983 6.983 14 O -0.994 6.994 15 C -0.554 4.554 16 C 0.009 3.991 17 C -0.532 4.532 18 H 0.050 0.950 19 C 0.041 3.959 20 N -0.893 5.893 21 Si 0.934 3.066 22 H -0.272 1.272 23 H -0.270 1.270 24 H -0.277 1.277 25 C -0.193 4.193 26 C -0.138 4.138 27 C -0.161 4.161 28 H 0.116 0.884 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.135 0.865 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.420 0.580 38 H 0.118 0.882 39 H 0.131 0.869 40 H 0.265 0.735 41 H 0.082 0.918 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.066 0.934 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.120 -2.428 15.364 22.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.251 6.251 3 C 0.070 3.930 4 C -0.229 4.229 5 C -0.096 4.096 6 C -0.176 4.176 7 C -0.054 4.054 8 C 0.079 3.921 9 H 0.114 0.886 10 C -0.223 4.223 11 N -0.871 5.871 12 S 2.723 3.277 13 O -0.973 6.973 14 O -0.984 6.984 15 C -0.687 4.687 16 C 0.006 3.994 17 C -0.569 4.569 18 H 0.068 0.932 19 C -0.162 4.162 20 N -0.529 5.529 21 Si 0.759 3.241 22 H -0.197 1.197 23 H -0.195 1.195 24 H -0.202 1.202 25 C -0.230 4.230 26 C -0.177 4.177 27 C -0.180 4.180 28 H 0.134 0.866 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.167 0.833 32 H 0.169 0.831 33 H 0.153 0.847 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.257 0.743 38 H 0.136 0.864 39 H 0.149 0.851 40 H 0.074 0.926 41 H 0.100 0.900 42 H 0.119 0.881 43 H 0.104 0.896 44 H 0.084 0.916 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.322 -2.226 15.375 21.819 hybrid contribution -0.540 0.609 -1.370 1.593 sum -15.861 -1.617 14.005 21.221 Atomic orbital electron populations 1.23329 0.76480 1.05480 1.02259 1.86052 1.23460 1.26923 1.88707 1.19132 0.92312 0.84961 0.96570 1.21534 1.01194 0.91973 1.08232 1.21239 0.94245 0.98051 0.96094 1.21090 0.94414 0.98306 1.03768 1.19686 0.94381 0.93096 0.98230 1.19787 0.90853 0.89775 0.91716 0.88626 1.22300 1.02097 1.03614 0.94254 1.55746 1.45536 1.27419 1.58413 1.04322 0.73359 0.75853 0.74163 1.93475 1.58851 1.85138 1.59826 1.93487 1.85633 1.43912 1.75379 1.29894 1.07395 1.17946 1.13419 1.18402 0.90844 0.92297 0.97816 1.20774 1.18873 1.16239 1.01033 0.93228 1.25529 0.94252 0.97519 0.98892 1.70056 1.28294 1.36771 1.17812 0.85865 0.78683 0.80459 0.79063 1.19702 1.19546 1.20207 1.23213 0.96960 1.05963 0.96864 1.22480 1.01622 0.96632 0.96938 1.20407 0.92182 0.98298 1.07149 0.86579 0.91339 0.91980 0.83261 0.83131 0.84708 0.91818 0.91000 0.89650 0.74303 0.86403 0.85105 0.92614 0.89955 0.88069 0.89615 0.91571 0.84651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.33 16 2 O -0.34 -6.91 10.50 -92.50 -0.97 -7.88 16 3 C 0.12 2.49 6.69 22.50 0.15 2.64 16 4 C -0.21 -3.72 9.04 22.37 0.20 -3.51 16 5 C -0.08 -1.35 10.04 22.25 0.22 -1.13 16 6 C -0.16 -3.15 9.15 22.28 0.20 -2.95 16 7 C -0.05 -1.18 4.95 -19.88 -0.10 -1.27 16 8 C 0.19 4.51 2.88 44.25 0.13 4.64 16 9 H 0.10 2.23 6.91 -2.39 -0.02 2.22 16 10 C -0.16 -3.57 9.49 71.98 0.68 -2.88 16 11 N -1.11 -31.98 5.31 -172.54 -0.92 -32.90 16 12 S 2.63 104.40 5.12 -56.49 -0.29 104.11 16 13 O -0.98 -41.24 17.11 -127.65 -2.18 -43.42 16 14 O -0.99 -47.89 17.74 -127.65 -2.26 -50.15 16 15 C -0.55 -23.04 5.86 71.98 0.42 -22.62 16 16 C 0.01 0.42 1.34 -52.93 -0.07 0.35 16 17 C -0.53 -29.79 8.16 25.60 0.21 -29.58 16 18 H 0.05 2.88 7.82 -2.92 -0.02 2.86 16 19 C 0.04 2.27 5.44 84.66 0.46 2.73 16 20 N -0.89 -49.98 12.85 21.45 0.28 -49.70 16 21 Si 0.93 44.80 29.54 68.60 2.03 46.82 16 22 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 23 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 24 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 25 C -0.19 -8.27 9.95 30.59 0.30 -7.97 16 26 C -0.14 -6.23 9.39 30.59 0.29 -5.94 16 27 C -0.16 -3.69 9.61 22.36 0.21 -3.47 16 28 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.07 0.58 7.66 -2.39 -0.02 0.56 16 30 H 0.06 0.62 7.66 -2.39 -0.02 0.60 16 31 H 0.15 1.82 6.30 -2.91 -0.02 1.80 16 32 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 33 H 0.14 2.33 6.83 -2.91 -0.02 2.31 16 34 H 0.06 1.62 7.42 -2.39 -0.02 1.60 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.42 10.56 7.05 -96.74 -0.68 9.88 16 38 H 0.12 5.27 8.14 -2.39 -0.02 5.25 16 39 H 0.13 4.40 7.24 -2.39 -0.02 4.38 16 40 H 0.26 14.05 8.32 -92.70 -0.77 13.27 16 41 H 0.08 3.54 8.14 -2.39 -0.02 3.52 16 42 H 0.10 3.77 8.14 -2.38 -0.02 3.75 16 43 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 44 H 0.07 3.24 8.14 -2.38 -0.02 3.22 16 45 H 0.14 2.89 8.04 -2.91 -0.02 2.86 16 Total: -1.00 -72.56 385.76 0.42 -72.13 By element: Atomic # 1 Polarization: 30.32 SS G_CDS: 0.32 Total: 30.64 kcal Atomic # 6 Polarization: -74.08 SS G_CDS: 4.43 Total: -69.65 kcal Atomic # 7 Polarization: -81.97 SS G_CDS: -0.64 Total: -82.61 kcal Atomic # 8 Polarization: -96.03 SS G_CDS: -5.42 Total: -101.45 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: 104.40 SS G_CDS: -0.29 Total: 104.11 kcal Total: -72.56 0.42 -72.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451087222.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.724 kcal (2) G-P(sol) polarization free energy of solvation -72.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds