Wall clock time and date at job start Tue Mar 31 2020 23:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35898 * 117.00263 * 2 1 4 4 C 1.38727 * 120.05911 * 180.02562 * 3 2 1 5 5 C 1.38152 * 119.94581 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05512 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94446 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.46890 * 340.00416 * 7 6 5 9 9 C 1.53003 * 109.46855 * 100.00029 * 7 6 5 10 10 N 1.46491 * 109.47043 * 219.99890 * 7 6 5 11 11 S 1.65601 * 120.00069 * 144.99792 * 10 7 6 12 12 O 1.42098 * 104.27794 * 308.93453 * 11 10 7 13 13 O 1.42098 * 104.27820 * 181.06901 * 11 10 7 14 14 C 1.81407 * 104.44612 * 65.00248 * 11 10 7 15 15 C 1.53000 * 109.47091 * 174.34737 * 14 11 10 16 16 C 1.50702 * 115.55070 * 295.23001 * 15 14 11 17 17 H 1.07993 * 120.00226 * 95.16158 * 16 15 14 18 18 C 1.37882 * 119.99822 * 274.88891 * 16 15 14 19 19 N 1.31515 * 119.99551 * 6.44628 * 18 16 15 20 20 Si 1.86792 * 120.00141 * 186.44700 * 18 16 15 21 21 H 1.48500 * 109.47156 * 89.99648 * 20 18 16 22 22 H 1.48499 * 109.47017 * 209.99977 * 20 18 16 23 23 H 1.48504 * 109.47240 * 330.00108 * 20 18 16 24 24 C 1.52998 * 117.49864 * 80.89449 * 15 14 11 25 25 C 1.52998 * 117.50210 * 149.55494 * 15 14 11 26 26 C 1.38264 * 120.10918 * 0.27663 * 6 5 4 27 27 C 1.38144 * 120.05770 * 359.45350 * 26 6 5 28 28 H 1.08998 * 109.47035 * 59.99298 * 1 2 3 29 29 H 1.08996 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46494 * 299.99760 * 1 2 3 31 31 H 1.08004 * 120.02785 * 359.95420 * 4 3 2 32 32 H 1.07993 * 119.97274 * 180.02562 * 5 4 3 33 33 H 1.09002 * 109.46854 * 180.02562 * 9 7 6 34 34 H 1.09005 * 109.47225 * 299.99924 * 9 7 6 35 35 H 1.09000 * 109.47549 * 60.00300 * 9 7 6 36 36 H 0.97001 * 120.00549 * 324.99980 * 10 7 6 37 37 H 1.08995 * 109.46970 * 54.34720 * 14 11 10 38 38 H 1.09000 * 109.46775 * 294.34286 * 14 11 10 39 39 H 0.97003 * 119.99746 * 185.04386 * 19 18 16 40 40 H 1.09007 * 117.50251 * 215.00100 * 24 15 14 41 41 H 1.09003 * 117.50010 * 0.02562 * 24 15 14 42 42 H 1.09008 * 117.49227 * 359.97438 * 25 15 14 43 43 H 1.08996 * 117.50141 * 144.97145 * 25 15 14 44 44 H 1.08004 * 119.96977 * 179.70333 * 26 6 5 45 45 H 1.08008 * 120.03051 * 180.27410 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0562 2.5170 -0.0011 6 6 3.3020 3.6758 -0.0016 7 6 3.9861 5.0186 -0.0028 8 1 5.0117 4.9041 0.3484 9 6 3.9940 5.5857 -1.4238 10 7 3.2654 5.9346 0.8846 11 16 4.0994 7.0632 1.7638 12 8 5.1192 6.3173 2.4141 13 8 3.0957 7.7376 2.5102 14 6 4.8162 8.1688 0.5170 15 6 5.5019 9.3461 1.2132 16 6 4.5905 10.2657 1.9843 17 1 4.4499 10.1215 3.0453 18 6 3.9404 11.2946 1.3363 19 7 4.0141 11.3978 0.0273 20 14 2.9553 12.5419 2.3176 21 1 3.8353 13.6735 2.7050 22 1 1.8328 13.0492 1.4881 23 1 2.4145 11.8945 3.5398 24 6 6.9084 9.1159 1.7697 25 6 6.7116 9.9720 0.5161 26 6 1.9212 3.6048 0.0042 27 6 1.2916 2.3751 -0.0009 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 4.0209 0.3799 -0.0002 32 1 5.1345 2.5750 -0.0019 33 1 4.4892 6.5567 -1.4247 34 1 4.5302 4.9041 -2.0841 35 1 2.9685 5.7002 -1.7750 36 1 2.2997 5.8801 0.9573 37 1 4.0263 8.5421 -0.1347 38 1 5.5484 7.6211 -0.0763 39 1 3.6189 12.1612 -0.4220 40 1 7.1745 9.6297 2.6935 41 1 7.3454 8.1259 1.6394 42 1 7.0191 9.5446 -0.4384 43 1 6.8479 11.0489 0.6148 44 1 1.3343 4.5114 0.0086 45 1 0.2129 2.3202 -0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451128856.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:58 Heat of formation + Delta-G solvation = -62.392843 kcal Electronic energy + Delta-G solvation = -27625.352535 eV Core-core repulsion = 23736.197313 eV Total energy + Delta-G solvation = -3889.155222 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.39516 -38.34916 -36.76326 -36.26542 -35.50104 -35.06369 -32.01973 -31.28156 -30.58601 -28.99920 -28.12538 -27.37100 -25.43694 -23.66658 -22.69316 -21.23746 -20.89202 -19.73650 -18.72449 -18.37819 -17.21144 -16.63515 -16.33726 -16.05620 -15.98281 -15.10421 -15.05182 -14.70744 -14.51541 -14.18478 -13.91281 -13.79612 -13.69747 -13.40706 -13.26293 -12.72854 -12.69843 -12.20842 -12.08264 -11.91576 -11.80979 -11.39261 -11.31334 -11.19311 -11.17487 -11.05142 -10.96338 -10.90777 -10.79511 -10.55985 -10.47054 -10.10318 -9.75120 -9.30232 -9.15550 -8.95034 -8.53997 -8.27550 -8.10133 -6.12941 -4.21638 1.04217 1.19037 1.27064 3.02456 3.30482 3.36855 3.39195 3.45867 3.62790 4.39848 4.50561 4.57098 4.60301 4.69080 4.81828 4.84473 5.00218 5.12275 5.14563 5.14867 5.17571 5.18747 5.23487 5.35341 5.46350 5.50172 5.67696 5.78871 5.82799 5.94363 6.01215 6.14159 6.15362 6.23133 6.28050 6.36071 6.55394 6.56620 6.60640 6.69427 6.97746 7.16119 7.22318 7.28518 7.38359 7.83368 8.21250 8.84961 9.49082 10.95480 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020200 B = 0.002900 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.805775 B = 9651.389264 C =10191.030907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.121 3.879 4 C -0.149 4.149 5 C -0.071 4.071 6 C -0.114 4.114 7 C 0.190 3.810 8 H 0.098 0.902 9 C -0.175 4.175 10 N -1.125 6.125 11 S 2.603 3.397 12 O -0.978 6.978 13 O -0.944 6.944 14 C -0.554 4.554 15 C 0.042 3.958 16 C -0.506 4.506 17 H 0.070 0.930 18 C 0.079 3.921 19 N -0.877 5.877 20 Si 0.890 3.110 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.267 1.267 24 C -0.214 4.214 25 C -0.138 4.138 26 C -0.069 4.069 27 C -0.205 4.205 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.055 0.945 31 H 0.131 0.869 32 H 0.134 0.866 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.065 0.935 36 H 0.410 0.590 37 H 0.136 0.864 38 H 0.099 0.901 39 H 0.262 0.738 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.086 0.914 44 H 0.127 0.873 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.046 -18.744 -5.574 19.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.076 3.924 4 C -0.168 4.168 5 C -0.089 4.089 6 C -0.116 4.116 7 C 0.082 3.918 8 H 0.116 0.884 9 C -0.234 4.234 10 N -0.882 5.882 11 S 2.700 3.300 12 O -0.968 6.968 13 O -0.934 6.934 14 C -0.687 4.687 15 C 0.040 3.960 16 C -0.543 4.543 17 H 0.088 0.912 18 C -0.126 4.126 19 N -0.512 5.512 20 Si 0.717 3.283 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.191 1.191 24 C -0.252 4.252 25 C -0.177 4.177 26 C -0.088 4.088 27 C -0.224 4.224 28 H 0.074 0.926 29 H 0.117 0.883 30 H 0.074 0.926 31 H 0.149 0.851 32 H 0.152 0.848 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.244 0.756 37 H 0.154 0.846 38 H 0.117 0.883 39 H 0.071 0.929 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.105 0.895 44 H 0.144 0.856 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -3.860 -18.858 -4.783 19.835 hybrid contribution -1.195 1.037 -0.401 1.633 sum -5.056 -17.821 -5.184 19.236 Atomic orbital electron populations 1.23046 0.78448 1.03830 1.01451 1.86055 1.21352 1.27079 1.88853 1.19048 0.92425 0.84071 0.96879 1.20393 0.91308 0.98577 1.06499 1.20880 1.00125 0.90748 0.97171 1.19859 0.93823 0.94656 1.03244 1.19580 0.95742 0.85983 0.90501 0.88379 1.22472 1.03341 1.02043 0.95537 1.56151 1.19293 1.50559 1.62168 1.05245 0.74697 0.73939 0.76096 1.93498 1.60514 1.70268 1.72502 1.93569 1.57472 1.74359 1.68028 1.30076 1.11586 1.11636 1.15374 1.18316 0.86354 0.93186 0.98155 1.20564 1.25774 1.13153 0.94794 0.91179 1.24933 0.95173 0.97726 0.94726 1.70013 1.44695 1.29178 1.07363 0.86600 0.79799 0.81252 0.80686 1.20544 1.21117 1.19110 1.23254 1.02982 1.00239 0.98697 1.22527 1.03583 0.98411 0.93228 1.20750 0.94036 0.97136 0.96855 1.21206 1.00010 0.92243 1.08958 0.92643 0.88338 0.92594 0.85114 0.84843 0.90993 0.91320 0.91634 0.75627 0.84609 0.88279 0.92881 0.89486 0.90645 0.91516 0.89546 0.85553 0.85442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.26 10.50 -19.42 -0.20 -3.46 16 3 C 0.12 1.33 6.69 -39.22 -0.26 1.06 16 4 C -0.15 -1.59 9.99 -39.43 -0.39 -1.98 16 5 C -0.07 -0.76 9.66 -39.60 -0.38 -1.15 16 6 C -0.11 -1.35 4.96 -104.60 -0.52 -1.87 16 7 C 0.19 2.41 3.01 -69.09 -0.21 2.20 16 8 H 0.10 1.25 7.34 -51.93 -0.38 0.87 16 9 C -0.18 -1.95 9.46 37.16 0.35 -1.60 16 10 N -1.13 -16.88 5.31 -5.89 -0.03 -16.91 16 11 S 2.60 51.95 5.33 -107.50 -0.57 51.38 16 12 O -0.98 -21.15 17.39 -57.54 -1.00 -22.15 16 13 O -0.94 -22.53 17.10 -57.54 -0.98 -23.52 16 14 C -0.55 -11.24 4.88 37.16 0.18 -11.06 16 15 C 0.04 1.01 1.34 -155.66 -0.21 0.80 16 16 C -0.51 -13.72 7.66 -34.44 -0.26 -13.99 16 17 H 0.07 1.97 7.82 -52.49 -0.41 1.56 16 18 C 0.08 2.13 5.39 -17.82 -0.10 2.04 16 19 N -0.88 -23.83 12.93 55.43 0.72 -23.12 16 20 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 24 C -0.21 -4.63 9.96 -26.70 -0.27 -4.89 16 25 C -0.14 -3.09 9.44 -26.70 -0.25 -3.34 16 26 C -0.07 -0.77 9.15 -39.61 -0.36 -1.13 16 27 C -0.21 -2.13 9.04 -39.43 -0.36 -2.49 16 28 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 29 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 31 H 0.13 1.18 8.06 -52.48 -0.42 0.75 16 32 H 0.13 1.18 8.03 -52.49 -0.42 0.76 16 33 H 0.07 0.85 5.97 -51.93 -0.31 0.54 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.41 5.47 7.03 -34.47 -0.24 5.22 16 37 H 0.14 2.84 8.14 -51.93 -0.42 2.42 16 38 H 0.10 1.68 7.11 -51.92 -0.37 1.31 16 39 H 0.26 6.80 8.32 -40.82 -0.34 6.46 16 40 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 41 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 42 H 0.07 1.36 8.14 -51.92 -0.42 0.93 16 43 H 0.09 2.05 8.14 -51.93 -0.42 1.62 16 44 H 0.13 1.25 6.80 -52.48 -0.36 0.89 16 45 H 0.13 1.04 6.30 -52.48 -0.33 0.71 16 LS Contribution 383.07 15.07 5.77 5.77 Total: -1.00 -33.72 383.07 -9.93 -43.64 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -6.56 Total: 8.28 kcal Atomic # 6 Polarization: -34.18 SS G_CDS: -2.05 Total: -36.23 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.69 Total: -40.03 kcal Atomic # 8 Polarization: -46.94 SS G_CDS: -2.19 Total: -49.13 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 51.95 SS G_CDS: -0.57 Total: 51.38 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.72 -9.93 -43.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451128856.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.750 kcal (2) G-P(sol) polarization free energy of solvation -33.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds