Wall clock time and date at job start Tue Mar 31 2020 23:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35898 * 117.00263 * 2 1 4 4 C 1.38727 * 120.05911 * 180.02562 * 3 2 1 5 5 C 1.38152 * 119.94581 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05512 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.94446 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.46890 * 340.00416 * 7 6 5 9 9 C 1.53003 * 109.46855 * 100.00029 * 7 6 5 10 10 N 1.46491 * 109.47043 * 219.99890 * 7 6 5 11 11 S 1.65601 * 120.00069 * 144.99792 * 10 7 6 12 12 O 1.42098 * 104.27794 * 308.93453 * 11 10 7 13 13 O 1.42098 * 104.27820 * 181.06901 * 11 10 7 14 14 C 1.81407 * 104.44612 * 65.00248 * 11 10 7 15 15 C 1.53000 * 109.47091 * 174.34737 * 14 11 10 16 16 C 1.50702 * 115.55070 * 295.23001 * 15 14 11 17 17 H 1.07993 * 120.00226 * 95.16158 * 16 15 14 18 18 C 1.37882 * 119.99822 * 274.88891 * 16 15 14 19 19 N 1.31515 * 119.99551 * 6.44628 * 18 16 15 20 20 Si 1.86792 * 120.00141 * 186.44700 * 18 16 15 21 21 H 1.48500 * 109.47156 * 89.99648 * 20 18 16 22 22 H 1.48499 * 109.47017 * 209.99977 * 20 18 16 23 23 H 1.48504 * 109.47240 * 330.00108 * 20 18 16 24 24 C 1.52998 * 117.49864 * 80.89449 * 15 14 11 25 25 C 1.52998 * 117.50210 * 149.55494 * 15 14 11 26 26 C 1.38264 * 120.10918 * 0.27663 * 6 5 4 27 27 C 1.38144 * 120.05770 * 359.45350 * 26 6 5 28 28 H 1.08998 * 109.47035 * 59.99298 * 1 2 3 29 29 H 1.08996 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46494 * 299.99760 * 1 2 3 31 31 H 1.08004 * 120.02785 * 359.95420 * 4 3 2 32 32 H 1.07993 * 119.97274 * 180.02562 * 5 4 3 33 33 H 1.09002 * 109.46854 * 180.02562 * 9 7 6 34 34 H 1.09005 * 109.47225 * 299.99924 * 9 7 6 35 35 H 1.09000 * 109.47549 * 60.00300 * 9 7 6 36 36 H 0.97001 * 120.00549 * 324.99980 * 10 7 6 37 37 H 1.08995 * 109.46970 * 54.34720 * 14 11 10 38 38 H 1.09000 * 109.46775 * 294.34286 * 14 11 10 39 39 H 0.97003 * 119.99746 * 185.04386 * 19 18 16 40 40 H 1.09007 * 117.50251 * 215.00100 * 24 15 14 41 41 H 1.09003 * 117.50010 * 0.02562 * 24 15 14 42 42 H 1.09008 * 117.49227 * 359.97438 * 25 15 14 43 43 H 1.08996 * 117.50141 * 144.97145 * 25 15 14 44 44 H 1.08004 * 119.96977 * 179.70333 * 26 6 5 45 45 H 1.08008 * 120.03051 * 180.27410 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0562 2.5170 -0.0011 6 6 3.3020 3.6758 -0.0016 7 6 3.9861 5.0186 -0.0028 8 1 5.0117 4.9041 0.3484 9 6 3.9940 5.5857 -1.4238 10 7 3.2654 5.9346 0.8846 11 16 4.0994 7.0632 1.7638 12 8 5.1192 6.3173 2.4141 13 8 3.0957 7.7376 2.5102 14 6 4.8162 8.1688 0.5170 15 6 5.5019 9.3461 1.2132 16 6 4.5905 10.2657 1.9843 17 1 4.4499 10.1215 3.0453 18 6 3.9404 11.2946 1.3363 19 7 4.0141 11.3978 0.0273 20 14 2.9553 12.5419 2.3176 21 1 3.8353 13.6735 2.7050 22 1 1.8328 13.0492 1.4881 23 1 2.4145 11.8945 3.5398 24 6 6.9084 9.1159 1.7697 25 6 6.7116 9.9720 0.5161 26 6 1.9212 3.6048 0.0042 27 6 1.2916 2.3751 -0.0009 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 4.0209 0.3799 -0.0002 32 1 5.1345 2.5750 -0.0019 33 1 4.4892 6.5567 -1.4247 34 1 4.5302 4.9041 -2.0841 35 1 2.9685 5.7002 -1.7750 36 1 2.2997 5.8801 0.9573 37 1 4.0263 8.5421 -0.1347 38 1 5.5484 7.6211 -0.0763 39 1 3.6189 12.1612 -0.4220 40 1 7.1745 9.6297 2.6935 41 1 7.3454 8.1259 1.6394 42 1 7.0191 9.5446 -0.4384 43 1 6.8479 11.0489 0.6148 44 1 1.3343 4.5114 0.0086 45 1 0.2129 2.3202 -0.0009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451128856.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:57 Heat of formation + Delta-G solvation = -84.645593 kcal Electronic energy + Delta-G solvation = -27626.317487 eV Core-core repulsion = 23736.197313 eV Total energy + Delta-G solvation = -3890.120174 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.15986 -39.17750 -38.54682 -37.91992 -36.78910 -36.48372 -34.04619 -32.06670 -31.58000 -30.11642 -29.46956 -28.02336 -27.43902 -24.53932 -23.50467 -22.97243 -21.80182 -21.47667 -20.22578 -19.19164 -18.55810 -18.35363 -17.59433 -16.96784 -16.83775 -16.63215 -16.54711 -16.16618 -15.78833 -15.61170 -15.01114 -14.96124 -14.78000 -14.49103 -14.23667 -13.86524 -13.62647 -13.55614 -13.46761 -13.15992 -13.11322 -12.90432 -12.88149 -12.81624 -12.78132 -12.48402 -12.42250 -12.20514 -11.96112 -11.86757 -11.81987 -11.71945 -11.51933 -10.84384 -10.58520 -10.48673 -9.95570 -9.86289 -9.07710 -8.17140 -6.29287 -0.49163 0.39094 0.41228 1.38541 1.41408 1.52380 2.02335 2.38913 2.42580 2.78003 2.98363 3.10955 3.37499 3.47656 3.66332 3.82534 3.95743 4.04354 4.19043 4.21437 4.30290 4.36734 4.39523 4.43053 4.49708 4.52551 4.58213 4.64473 4.72204 4.74636 4.84650 4.92480 4.98821 5.05002 5.13533 5.23865 5.30271 5.34994 5.39987 5.50696 5.61340 5.68102 5.75915 5.79615 6.13107 6.25850 6.44542 6.76687 7.42137 8.90468 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020200 B = 0.002900 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.805775 B = 9651.389264 C =10191.030907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.112 3.888 4 C -0.159 4.159 5 C -0.075 4.075 6 C -0.128 4.128 7 C 0.184 3.816 8 H 0.099 0.901 9 C -0.174 4.174 10 N -1.113 6.113 11 S 2.619 3.381 12 O -0.997 6.997 13 O -0.991 6.991 14 C -0.548 4.548 15 C 0.009 3.991 16 C -0.523 4.523 17 H 0.047 0.953 18 C 0.041 3.959 19 N -0.892 5.892 20 Si 0.932 3.068 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.278 1.278 24 C -0.204 4.204 25 C -0.134 4.134 26 C -0.080 4.080 27 C -0.209 4.209 28 H 0.064 0.936 29 H 0.119 0.881 30 H 0.060 0.940 31 H 0.144 0.856 32 H 0.150 0.850 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.418 0.582 37 H 0.128 0.872 38 H 0.135 0.865 39 H 0.264 0.736 40 H 0.082 0.918 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.066 0.934 44 H 0.134 0.866 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.108 -20.177 -6.698 21.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.067 3.933 4 C -0.177 4.177 5 C -0.093 4.093 6 C -0.130 4.130 7 C 0.078 3.922 8 H 0.117 0.883 9 C -0.233 4.233 10 N -0.873 5.873 11 S 2.717 3.283 12 O -0.986 6.986 13 O -0.981 6.981 14 C -0.681 4.681 15 C 0.007 3.993 16 C -0.561 4.561 17 H 0.065 0.935 18 C -0.162 4.162 19 N -0.528 5.528 20 Si 0.758 3.242 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.203 1.203 24 C -0.241 4.241 25 C -0.173 4.173 26 C -0.098 4.098 27 C -0.228 4.228 28 H 0.083 0.917 29 H 0.137 0.863 30 H 0.079 0.921 31 H 0.161 0.839 32 H 0.168 0.832 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.254 0.746 37 H 0.146 0.854 38 H 0.153 0.847 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.118 0.882 42 H 0.108 0.892 43 H 0.084 0.916 44 H 0.152 0.848 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.924 -20.287 -5.906 21.490 hybrid contribution -1.208 1.357 -0.057 1.818 sum -5.132 -18.930 -5.963 20.499 Atomic orbital electron populations 1.23322 0.76636 1.05513 1.02132 1.86040 1.23305 1.26809 1.88700 1.19270 0.92838 0.84591 0.96618 1.20636 0.91634 0.99096 1.06365 1.21100 1.01066 0.90469 0.96690 1.19843 0.94210 0.94313 1.04630 1.19809 0.95566 0.86091 0.90733 0.88285 1.22475 1.03948 1.02058 0.94818 1.55715 1.19645 1.49729 1.62192 1.04459 0.74004 0.73859 0.75984 1.93466 1.61248 1.70532 1.73402 1.93503 1.58856 1.75810 1.69970 1.29941 1.12095 1.10789 1.15237 1.18441 0.86901 0.94452 0.99510 1.20709 1.26743 1.14413 0.94188 0.93470 1.25462 0.96039 0.99046 0.95610 1.70048 1.45374 1.29599 1.07809 0.85942 0.79111 0.79823 0.79319 1.19566 1.20187 1.20282 1.23311 1.01284 1.01236 0.98243 1.22488 1.02734 0.97515 0.94599 1.20934 0.94078 0.97853 0.96973 1.21421 1.01088 0.91803 1.08474 0.91705 0.86296 0.92109 0.83852 0.83189 0.91685 0.89169 0.91224 0.74585 0.85397 0.84733 0.92700 0.89947 0.88151 0.89179 0.91578 0.84805 0.83577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.33 -6.28 10.50 -92.40 -0.97 -7.25 16 3 C 0.11 2.29 6.69 22.51 0.15 2.44 16 4 C -0.16 -3.14 9.99 22.37 0.22 -2.91 16 5 C -0.07 -1.49 9.66 22.26 0.22 -1.27 16 6 C -0.13 -2.82 4.96 -19.85 -0.10 -2.91 16 7 C 0.18 4.36 3.01 44.25 0.13 4.50 16 8 H 0.10 2.32 7.34 -2.39 -0.02 2.30 16 9 C -0.17 -3.49 9.46 71.98 0.68 -2.81 16 10 N -1.11 -32.25 5.31 -172.53 -0.92 -33.17 16 11 S 2.62 103.55 5.33 -56.49 -0.30 103.25 16 12 O -1.00 -42.34 17.39 -127.65 -2.22 -44.56 16 13 O -0.99 -48.18 17.10 -127.65 -2.18 -50.37 16 14 C -0.55 -21.65 4.88 71.98 0.35 -21.30 16 15 C 0.01 0.43 1.34 -52.93 -0.07 0.36 16 16 C -0.52 -28.80 7.66 25.60 0.20 -28.60 16 17 H 0.05 2.74 7.82 -2.91 -0.02 2.71 16 18 C 0.04 2.22 5.39 84.66 0.46 2.68 16 19 N -0.89 -48.40 12.93 21.45 0.28 -48.13 16 20 Si 0.93 44.01 29.54 68.60 2.03 46.04 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 23 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 24 C -0.20 -8.54 9.96 30.62 0.30 -8.24 16 25 C -0.13 -5.85 9.44 30.62 0.29 -5.56 16 26 C -0.08 -1.66 9.15 22.25 0.20 -1.46 16 27 C -0.21 -4.00 9.04 22.37 0.20 -3.79 16 28 H 0.06 0.58 7.66 -2.39 -0.02 0.56 16 29 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.60 7.66 -2.39 -0.02 0.58 16 31 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 32 H 0.15 2.34 8.03 -2.91 -0.02 2.32 16 33 H 0.06 1.39 5.97 -2.39 -0.01 1.38 16 34 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.42 10.84 7.03 -96.75 -0.68 10.16 16 37 H 0.13 5.28 8.14 -2.39 -0.02 5.26 16 38 H 0.13 4.23 7.11 -2.39 -0.02 4.21 16 39 H 0.26 13.65 8.32 -92.71 -0.77 12.88 16 40 H 0.08 3.48 8.14 -2.38 -0.02 3.46 16 41 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 42 H 0.09 3.45 8.14 -2.38 -0.02 3.43 16 43 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 44 H 0.13 2.46 6.80 -2.91 -0.02 2.44 16 45 H 0.15 2.10 6.30 -2.91 -0.02 2.08 16 Total: -1.00 -72.00 383.07 0.38 -71.62 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: 0.32 Total: 30.14 kcal Atomic # 6 Polarization: -71.92 SS G_CDS: 4.35 Total: -67.57 kcal Atomic # 7 Polarization: -80.65 SS G_CDS: -0.64 Total: -81.29 kcal Atomic # 8 Polarization: -96.80 SS G_CDS: -5.37 Total: -102.18 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: 103.55 SS G_CDS: -0.30 Total: 103.25 kcal Total: -72.00 0.38 -71.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451128856.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.029 kcal (2) G-P(sol) polarization free energy of solvation -72.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds