Wall clock time and date at job start Tue Mar 31 2020 23:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35894 * 117.00199 * 2 1 4 4 C 1.38725 * 120.05867 * 180.02562 * 3 2 1 5 5 C 1.38149 * 119.94874 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05022 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.94255 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.47386 * 20.00327 * 7 6 5 9 9 C 1.53005 * 109.47335 * 260.00125 * 7 6 5 10 10 N 1.46508 * 109.47106 * 140.00152 * 7 6 5 11 11 S 1.65598 * 120.00068 * 215.00260 * 10 7 6 12 12 O 1.42104 * 104.27569 * 308.92569 * 11 10 7 13 13 O 1.42102 * 104.27715 * 181.07232 * 11 10 7 14 14 C 1.81394 * 104.44995 * 64.99872 * 11 10 7 15 15 C 1.53003 * 109.47110 * 181.12621 * 14 11 10 16 16 C 1.50697 * 115.55199 * 294.68768 * 15 14 11 17 17 H 1.07997 * 119.99876 * 95.19048 * 16 15 14 18 18 C 1.37875 * 119.99596 * 274.90937 * 16 15 14 19 19 N 1.31518 * 120.00369 * 6.46189 * 18 16 15 20 20 Si 1.86800 * 119.99771 * 186.45471 * 18 16 15 21 21 H 1.48497 * 109.47349 * 90.00143 * 20 18 16 22 22 H 1.48504 * 109.47304 * 210.00587 * 20 18 16 23 23 H 1.48507 * 109.47196 * 330.00300 * 20 18 16 24 24 C 1.53001 * 117.49552 * 80.35789 * 15 14 11 25 25 C 1.53000 * 117.49468 * 149.01362 * 15 14 11 26 26 C 1.38267 * 120.11429 * 0.27632 * 6 5 4 27 27 C 1.38147 * 120.05607 * 359.44972 * 26 6 5 28 28 H 1.08997 * 109.47682 * 60.00042 * 1 2 3 29 29 H 1.09007 * 109.47013 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47205 * 299.99930 * 1 2 3 31 31 H 1.08004 * 120.03073 * 359.95349 * 4 3 2 32 32 H 1.07993 * 119.97842 * 180.02562 * 5 4 3 33 33 H 1.08995 * 109.46739 * 300.00088 * 9 7 6 34 34 H 1.08995 * 109.46871 * 60.00422 * 9 7 6 35 35 H 1.09001 * 109.46818 * 179.97438 * 9 7 6 36 36 H 0.97001 * 119.99685 * 35.00197 * 10 7 6 37 37 H 1.08999 * 109.47281 * 61.12780 * 14 11 10 38 38 H 1.09000 * 109.47351 * 301.12981 * 14 11 10 39 39 H 0.97001 * 119.99982 * 185.08576 * 19 18 16 40 40 H 1.09004 * 117.50150 * 215.00342 * 24 15 14 41 41 H 1.09010 * 117.50069 * 0.02562 * 24 15 14 42 42 H 1.08999 * 117.50450 * 359.97438 * 25 15 14 43 43 H 1.09005 * 117.49716 * 144.98051 * 25 15 14 44 44 H 1.08002 * 119.97497 * 179.69950 * 26 6 5 45 45 H 1.07992 * 120.03027 * 180.27449 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0561 2.5169 -0.0011 6 6 3.3019 3.6757 -0.0016 7 6 3.9861 5.0185 -0.0016 8 1 5.0116 4.9038 -0.3527 9 6 3.9939 5.5869 1.4189 10 7 3.2653 5.9338 -0.8899 11 16 4.0993 7.0616 -1.7701 12 8 4.9189 7.7176 -0.8123 13 8 3.0908 7.7691 -2.4785 14 6 5.1136 6.0842 -2.9131 15 6 5.9620 7.0234 -3.7728 16 6 5.1935 7.9164 -4.7125 17 1 4.9393 8.9227 -4.4142 18 6 4.8200 7.4504 -5.9552 19 7 5.0210 6.1901 -6.2727 20 14 4.0282 8.6092 -7.1879 21 1 5.0828 9.2449 -8.0179 22 1 3.1034 7.8447 -8.0629 23 1 3.2688 9.6595 -6.4629 24 6 7.2420 7.5863 -3.1518 25 6 7.3266 6.5135 -4.2403 26 6 1.9211 3.6047 0.0042 27 6 1.2915 2.3751 -0.0010 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0209 0.3799 -0.0002 32 1 5.1345 2.5750 -0.0019 33 1 2.9684 5.7016 1.7699 34 1 4.5302 4.9060 2.0797 35 1 4.4892 6.5579 1.4189 36 1 2.2996 5.8791 -0.9625 37 1 4.4652 5.4893 -3.5563 38 1 5.7670 5.4227 -2.3443 39 1 4.8268 5.8792 -7.1708 40 1 7.5283 8.6025 -3.4229 41 1 7.4799 7.2872 -2.1309 42 1 7.6202 5.5091 -3.9351 43 1 7.6684 6.8236 -5.2278 44 1 1.3342 4.5113 0.0086 45 1 0.2129 2.3202 -0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451128857.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:02 Heat of formation + Delta-G solvation = -62.814504 kcal Electronic energy + Delta-G solvation = -27788.117000 eV Core-core repulsion = 23898.943493 eV Total energy + Delta-G solvation = -3889.173507 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.37589 -38.33283 -36.74976 -36.26912 -35.46767 -35.03880 -32.02101 -31.26430 -30.58933 -28.84774 -28.16581 -27.38449 -25.44177 -23.66465 -22.67871 -21.21692 -20.89255 -19.75739 -18.69931 -18.34816 -17.20539 -16.53229 -16.41952 -16.04461 -15.95561 -15.09018 -14.99697 -14.74157 -14.48497 -14.17760 -13.86076 -13.81338 -13.65765 -13.44164 -13.10603 -12.77790 -12.68281 -12.18882 -12.07495 -11.92738 -11.81448 -11.43478 -11.28648 -11.18544 -11.11723 -11.04924 -10.95488 -10.89245 -10.79021 -10.56451 -10.45338 -10.10970 -9.74311 -9.31024 -9.13981 -8.93731 -8.53818 -8.25874 -8.08997 -6.12730 -4.22781 1.05862 1.20588 1.27357 3.05231 3.30747 3.37144 3.39503 3.45438 3.65052 4.39646 4.47802 4.57626 4.65494 4.71440 4.82073 4.87462 4.97753 5.07720 5.14583 5.16787 5.19021 5.21057 5.27532 5.38359 5.48074 5.50524 5.71063 5.83753 5.85951 5.98001 6.02378 6.15801 6.18099 6.26013 6.32588 6.38286 6.55417 6.58380 6.62231 6.71571 6.99373 7.18569 7.23916 7.27604 7.39614 7.82282 8.21230 8.83478 9.48712 10.95589 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013135 B = 0.003414 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.128656 B = 8199.692883 C = 8932.793032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.122 3.878 4 C -0.148 4.148 5 C -0.071 4.071 6 C -0.120 4.120 7 C 0.197 3.803 8 H 0.089 0.911 9 C -0.166 4.166 10 N -1.126 6.126 11 S 2.605 3.395 12 O -0.973 6.973 13 O -0.949 6.949 14 C -0.553 4.553 15 C 0.043 3.957 16 C -0.511 4.511 17 H 0.069 0.931 18 C 0.080 3.920 19 N -0.875 5.875 20 Si 0.889 3.111 21 H -0.279 1.279 22 H -0.285 1.285 23 H -0.267 1.267 24 C -0.210 4.210 25 C -0.140 4.140 26 C -0.068 4.068 27 C -0.205 4.205 28 H 0.056 0.944 29 H 0.098 0.902 30 H 0.054 0.946 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.410 0.590 37 H 0.135 0.865 38 H 0.096 0.904 39 H 0.262 0.738 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.086 0.914 44 H 0.126 0.874 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.787 -11.684 14.234 19.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.077 3.923 4 C -0.166 4.166 5 C -0.090 4.090 6 C -0.122 4.122 7 C 0.089 3.911 8 H 0.107 0.893 9 C -0.225 4.225 10 N -0.883 5.883 11 S 2.702 3.298 12 O -0.963 6.963 13 O -0.939 6.939 14 C -0.686 4.686 15 C 0.040 3.960 16 C -0.548 4.548 17 H 0.087 0.913 18 C -0.124 4.124 19 N -0.510 5.510 20 Si 0.716 3.284 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.191 1.191 24 C -0.248 4.248 25 C -0.179 4.179 26 C -0.086 4.086 27 C -0.224 4.224 28 H 0.075 0.925 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.243 0.757 37 H 0.153 0.847 38 H 0.115 0.885 39 H 0.072 0.928 40 H 0.105 0.895 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.104 0.896 44 H 0.143 0.857 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.709 -11.060 14.260 18.928 hybrid contribution -0.931 -0.230 -1.137 1.488 sum -6.641 -11.290 13.123 18.541 Atomic orbital electron populations 1.23048 0.78447 1.03845 1.01438 1.86058 1.21355 1.27065 1.88809 1.19050 0.92430 0.84086 0.96728 1.20393 0.91324 0.98605 1.06323 1.20865 1.00059 0.90781 0.97284 1.19936 0.93930 0.94753 1.03562 1.19491 0.94758 0.85628 0.91213 0.89273 1.22323 1.02700 1.02445 0.94989 1.56205 1.18965 1.54006 1.59082 1.05216 0.75296 0.74682 0.74596 1.93497 1.70793 1.72046 1.59937 1.93559 1.56808 1.69481 1.74036 1.29990 1.13391 1.12224 1.13039 1.18289 0.85927 0.95653 0.96085 1.20552 1.35761 0.98702 0.99807 0.91307 1.24936 0.94390 0.94797 0.98311 1.70014 1.47496 1.13758 1.19746 0.86606 0.79459 0.81328 0.80983 1.20478 1.21056 1.19105 1.23224 1.05862 0.98953 0.96726 1.22536 1.02326 0.95505 0.97537 1.20717 0.93988 0.97073 0.96866 1.21202 1.00007 0.92252 1.08895 0.92534 0.88338 0.92693 0.85096 0.84898 0.92226 0.91730 0.90325 0.75664 0.84717 0.88536 0.92818 0.89519 0.90632 0.91543 0.89572 0.85650 0.85453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.38 10.50 -19.41 -0.20 -3.59 16 3 C 0.12 1.38 6.69 -39.22 -0.26 1.12 16 4 C -0.15 -1.62 9.99 -39.43 -0.39 -2.01 16 5 C -0.07 -0.77 9.66 -39.60 -0.38 -1.16 16 6 C -0.12 -1.40 4.96 -104.60 -0.52 -1.92 16 7 C 0.20 2.49 2.87 -69.08 -0.20 2.29 16 8 H 0.09 1.07 6.99 -51.93 -0.36 0.71 16 9 C -0.17 -1.92 9.49 37.16 0.35 -1.56 16 10 N -1.13 -16.73 5.31 -5.88 -0.03 -16.76 16 11 S 2.60 51.83 5.18 -107.50 -0.56 51.28 16 12 O -0.97 -20.54 17.11 -57.54 -0.98 -21.52 16 13 O -0.95 -22.60 17.48 -57.54 -1.01 -23.61 16 14 C -0.55 -11.53 5.83 37.16 0.22 -11.31 16 15 C 0.04 1.04 1.33 -155.66 -0.21 0.83 16 16 C -0.51 -14.01 7.97 -34.44 -0.27 -14.29 16 17 H 0.07 1.93 7.82 -52.49 -0.41 1.52 16 18 C 0.08 2.20 5.39 -17.82 -0.10 2.11 16 19 N -0.87 -24.18 12.93 55.43 0.72 -23.46 16 20 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 24 C -0.21 -4.56 9.96 -26.69 -0.27 -4.83 16 25 C -0.14 -3.16 9.43 -26.69 -0.25 -3.42 16 26 C -0.07 -0.75 9.14 -39.60 -0.36 -1.12 16 27 C -0.20 -2.16 9.04 -39.43 -0.36 -2.52 16 28 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 29 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.31 7.66 -51.93 -0.40 -0.08 16 31 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 32 H 0.13 1.17 8.03 -52.49 -0.42 0.75 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 1.04 7.42 -51.93 -0.39 0.66 16 36 H 0.41 5.39 7.05 -34.47 -0.24 5.15 16 37 H 0.13 2.97 8.14 -51.92 -0.42 2.55 16 38 H 0.10 1.67 7.36 -51.92 -0.38 1.29 16 39 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 40 H 0.09 1.86 8.14 -51.93 -0.42 1.43 16 41 H 0.08 1.48 8.14 -51.92 -0.42 1.06 16 42 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.09 2.06 8.14 -51.93 -0.42 1.64 16 44 H 0.13 1.22 6.83 -52.49 -0.36 0.86 16 45 H 0.13 1.06 6.30 -52.49 -0.33 0.73 16 LS Contribution 385.58 15.07 5.81 5.81 Total: -1.00 -33.73 385.58 -9.92 -43.64 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: -6.63 Total: 8.36 kcal Atomic # 6 Polarization: -34.60 SS G_CDS: -2.01 Total: -36.61 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.69 Total: -40.22 kcal Atomic # 8 Polarization: -46.52 SS G_CDS: -2.19 Total: -48.72 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 51.83 SS G_CDS: -0.56 Total: 51.28 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.73 -9.92 -43.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451128857.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.173 kcal (2) G-P(sol) polarization free energy of solvation -33.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds