Wall clock time and date at job start Tue Mar 31 2020 23:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35894 * 117.00199 * 2 1 4 4 C 1.38725 * 120.05867 * 180.02562 * 3 2 1 5 5 C 1.38149 * 119.94874 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05022 * 359.97438 * 5 4 3 7 7 C 1.50699 * 119.94255 * 179.97438 * 6 5 4 8 8 H 1.09000 * 109.47386 * 20.00327 * 7 6 5 9 9 C 1.53005 * 109.47335 * 260.00125 * 7 6 5 10 10 N 1.46508 * 109.47106 * 140.00152 * 7 6 5 11 11 S 1.65598 * 120.00068 * 215.00260 * 10 7 6 12 12 O 1.42104 * 104.27569 * 308.92569 * 11 10 7 13 13 O 1.42102 * 104.27715 * 181.07232 * 11 10 7 14 14 C 1.81394 * 104.44995 * 64.99872 * 11 10 7 15 15 C 1.53003 * 109.47110 * 181.12621 * 14 11 10 16 16 C 1.50697 * 115.55199 * 294.68768 * 15 14 11 17 17 H 1.07997 * 119.99876 * 95.19048 * 16 15 14 18 18 C 1.37875 * 119.99596 * 274.90937 * 16 15 14 19 19 N 1.31518 * 120.00369 * 6.46189 * 18 16 15 20 20 Si 1.86800 * 119.99771 * 186.45471 * 18 16 15 21 21 H 1.48497 * 109.47349 * 90.00143 * 20 18 16 22 22 H 1.48504 * 109.47304 * 210.00587 * 20 18 16 23 23 H 1.48507 * 109.47196 * 330.00300 * 20 18 16 24 24 C 1.53001 * 117.49552 * 80.35789 * 15 14 11 25 25 C 1.53000 * 117.49468 * 149.01362 * 15 14 11 26 26 C 1.38267 * 120.11429 * 0.27632 * 6 5 4 27 27 C 1.38147 * 120.05607 * 359.44972 * 26 6 5 28 28 H 1.08997 * 109.47682 * 60.00042 * 1 2 3 29 29 H 1.09007 * 109.47013 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47205 * 299.99930 * 1 2 3 31 31 H 1.08004 * 120.03073 * 359.95349 * 4 3 2 32 32 H 1.07993 * 119.97842 * 180.02562 * 5 4 3 33 33 H 1.08995 * 109.46739 * 300.00088 * 9 7 6 34 34 H 1.08995 * 109.46871 * 60.00422 * 9 7 6 35 35 H 1.09001 * 109.46818 * 179.97438 * 9 7 6 36 36 H 0.97001 * 119.99685 * 35.00197 * 10 7 6 37 37 H 1.08999 * 109.47281 * 61.12780 * 14 11 10 38 38 H 1.09000 * 109.47351 * 301.12981 * 14 11 10 39 39 H 0.97001 * 119.99982 * 185.08576 * 19 18 16 40 40 H 1.09004 * 117.50150 * 215.00342 * 24 15 14 41 41 H 1.09010 * 117.50069 * 0.02562 * 24 15 14 42 42 H 1.08999 * 117.50450 * 359.97438 * 25 15 14 43 43 H 1.09005 * 117.49716 * 144.98051 * 25 15 14 44 44 H 1.08002 * 119.97497 * 179.69950 * 26 6 5 45 45 H 1.07992 * 120.03027 * 180.27449 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0561 2.5169 -0.0011 6 6 3.3019 3.6757 -0.0016 7 6 3.9861 5.0185 -0.0016 8 1 5.0116 4.9038 -0.3527 9 6 3.9939 5.5869 1.4189 10 7 3.2653 5.9338 -0.8899 11 16 4.0993 7.0616 -1.7701 12 8 4.9189 7.7176 -0.8123 13 8 3.0908 7.7691 -2.4785 14 6 5.1136 6.0842 -2.9131 15 6 5.9620 7.0234 -3.7728 16 6 5.1935 7.9164 -4.7125 17 1 4.9393 8.9227 -4.4142 18 6 4.8200 7.4504 -5.9552 19 7 5.0210 6.1901 -6.2727 20 14 4.0282 8.6092 -7.1879 21 1 5.0828 9.2449 -8.0179 22 1 3.1034 7.8447 -8.0629 23 1 3.2688 9.6595 -6.4629 24 6 7.2420 7.5863 -3.1518 25 6 7.3266 6.5135 -4.2403 26 6 1.9211 3.6047 0.0042 27 6 1.2915 2.3751 -0.0010 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0209 0.3799 -0.0002 32 1 5.1345 2.5750 -0.0019 33 1 2.9684 5.7016 1.7699 34 1 4.5302 4.9060 2.0797 35 1 4.4892 6.5579 1.4189 36 1 2.2996 5.8791 -0.9625 37 1 4.4652 5.4893 -3.5563 38 1 5.7670 5.4227 -2.3443 39 1 4.8268 5.8792 -7.1708 40 1 7.5283 8.6025 -3.4229 41 1 7.4799 7.2872 -2.1309 42 1 7.6202 5.5091 -3.9351 43 1 7.6684 6.8236 -5.2278 44 1 1.3342 4.5113 0.0086 45 1 0.2129 2.3202 -0.0010 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451128857.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:01 Heat of formation + Delta-G solvation = -85.072743 kcal Electronic energy + Delta-G solvation = -27789.082190 eV Core-core repulsion = 23898.943493 eV Total energy + Delta-G solvation = -3890.138697 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.15213 -39.17266 -38.54943 -37.90864 -36.79576 -36.42075 -34.06936 -32.05435 -31.59338 -29.86972 -29.67212 -28.01737 -27.47934 -24.54803 -23.49309 -22.96899 -21.80929 -21.51307 -20.19588 -19.18445 -18.54959 -18.32055 -17.63514 -16.96299 -16.80441 -16.62262 -16.57966 -16.15155 -15.79121 -15.59393 -14.99850 -14.90825 -14.80582 -14.48306 -14.21934 -13.77405 -13.70812 -13.63990 -13.49568 -13.15259 -13.07201 -12.88395 -12.86295 -12.82187 -12.77653 -12.52095 -12.44914 -12.21315 -11.95174 -11.86678 -11.79847 -11.70169 -11.54087 -10.85963 -10.59394 -10.50179 -9.94073 -9.86366 -9.06914 -8.19168 -6.32935 -0.48723 0.40159 0.42009 1.37555 1.40391 1.50958 2.03265 2.39841 2.40776 2.78911 2.98088 3.09004 3.37465 3.48373 3.66298 3.82908 3.95523 4.02888 4.12106 4.21652 4.34035 4.38018 4.39674 4.43160 4.49403 4.53589 4.58879 4.64401 4.72743 4.75083 4.86264 4.95697 4.99754 5.05830 5.14169 5.23796 5.30404 5.36909 5.43130 5.48947 5.61201 5.67929 5.72987 5.80904 6.12747 6.23690 6.45427 6.73976 7.39616 8.88480 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013135 B = 0.003414 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.128656 B = 8199.692883 C = 8932.793032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.112 3.888 4 C -0.160 4.160 5 C -0.074 4.074 6 C -0.130 4.130 7 C 0.190 3.810 8 H 0.098 0.902 9 C -0.164 4.164 10 N -1.112 6.112 11 S 2.624 3.376 12 O -0.986 6.986 13 O -0.995 6.995 14 C -0.553 4.553 15 C 0.009 3.991 16 C -0.529 4.529 17 H 0.048 0.952 18 C 0.041 3.959 19 N -0.893 5.893 20 Si 0.933 3.067 21 H -0.268 1.268 22 H -0.277 1.277 23 H -0.276 1.276 24 C -0.196 4.196 25 C -0.138 4.138 26 C -0.078 4.078 27 C -0.210 4.210 28 H 0.059 0.941 29 H 0.118 0.882 30 H 0.066 0.934 31 H 0.142 0.858 32 H 0.152 0.848 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.418 0.582 37 H 0.119 0.881 38 H 0.133 0.867 39 H 0.264 0.736 40 H 0.082 0.918 41 H 0.102 0.898 42 H 0.088 0.912 43 H 0.065 0.935 44 H 0.135 0.865 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.856 -13.000 15.379 20.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.066 3.934 4 C -0.178 4.178 5 C -0.092 4.092 6 C -0.132 4.132 7 C 0.083 3.917 8 H 0.116 0.884 9 C -0.223 4.223 10 N -0.873 5.873 11 S 2.721 3.279 12 O -0.976 6.976 13 O -0.985 6.985 14 C -0.685 4.685 15 C 0.007 3.993 16 C -0.566 4.566 17 H 0.066 0.934 18 C -0.162 4.162 19 N -0.529 5.529 20 Si 0.759 3.241 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.200 1.200 24 C -0.234 4.234 25 C -0.177 4.177 26 C -0.096 4.096 27 C -0.228 4.228 28 H 0.078 0.922 29 H 0.136 0.864 30 H 0.084 0.916 31 H 0.160 0.840 32 H 0.170 0.830 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.254 0.746 37 H 0.138 0.862 38 H 0.151 0.849 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.120 0.880 42 H 0.107 0.893 43 H 0.083 0.917 44 H 0.152 0.848 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.776 -12.375 15.399 20.582 hybrid contribution -0.950 0.105 -1.416 1.708 sum -6.726 -12.270 13.983 19.782 Atomic orbital electron populations 1.23317 0.76665 1.05478 1.02123 1.86039 1.23293 1.26905 1.88699 1.19290 0.92880 0.84602 0.96594 1.20638 0.91624 0.99186 1.06381 1.21098 1.01107 0.90386 0.96638 1.19882 0.94223 0.94316 1.04802 1.19753 0.95031 0.85685 0.91202 0.88413 1.22312 1.03362 1.01916 0.94733 1.55764 1.19289 1.53723 1.58479 1.04363 0.74620 0.74765 0.74126 1.93474 1.71270 1.72911 1.59916 1.93493 1.58243 1.71460 1.75340 1.29880 1.13636 1.12022 1.12979 1.18406 0.86761 0.96845 0.97260 1.20741 1.36337 0.98548 1.01023 0.93352 1.25500 0.95000 0.96033 0.99652 1.70059 1.48343 1.14448 1.20061 0.85928 0.79015 0.79772 0.79431 1.19323 1.20260 1.20049 1.23278 1.03667 0.98642 0.97768 1.22496 1.01317 0.96884 0.96986 1.20921 0.94112 0.97758 0.96854 1.21418 1.01065 0.91850 1.08483 0.92215 0.86374 0.91578 0.84038 0.83003 0.91504 0.89483 0.92143 0.74572 0.86227 0.84930 0.92683 0.89922 0.87983 0.89321 0.91652 0.84752 0.83647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -6.59 10.50 -92.36 -0.97 -7.56 16 3 C 0.11 2.35 6.69 22.51 0.15 2.50 16 4 C -0.16 -3.23 9.99 22.37 0.22 -3.00 16 5 C -0.07 -1.44 9.66 22.26 0.22 -1.22 16 6 C -0.13 -2.78 4.96 -19.85 -0.10 -2.88 16 7 C 0.19 4.40 2.87 44.25 0.13 4.53 16 8 H 0.10 2.08 6.99 -2.39 -0.02 2.07 16 9 C -0.16 -3.45 9.49 71.98 0.68 -2.77 16 10 N -1.11 -31.65 5.31 -172.50 -0.92 -32.56 16 11 S 2.62 103.02 5.18 -56.49 -0.29 102.73 16 12 O -0.99 -40.66 17.11 -127.65 -2.18 -42.85 16 13 O -1.00 -48.12 17.48 -127.65 -2.23 -50.35 16 14 C -0.55 -22.46 5.83 71.98 0.42 -22.04 16 15 C 0.01 0.45 1.33 -52.93 -0.07 0.38 16 16 C -0.53 -29.42 7.97 25.60 0.20 -29.22 16 17 H 0.05 2.80 7.82 -2.91 -0.02 2.78 16 18 C 0.04 2.24 5.39 84.65 0.46 2.70 16 19 N -0.89 -49.52 12.93 21.45 0.28 -49.24 16 20 Si 0.93 44.33 29.54 68.60 2.03 46.36 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 24 C -0.20 -8.25 9.96 30.62 0.30 -7.95 16 25 C -0.14 -6.09 9.43 30.62 0.29 -5.80 16 26 C -0.08 -1.60 9.14 22.25 0.20 -1.39 16 27 C -0.21 -4.06 9.04 22.37 0.20 -3.85 16 28 H 0.06 0.66 7.66 -2.39 -0.02 0.64 16 29 H 0.12 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.07 0.62 7.66 -2.39 -0.02 0.60 16 31 H 0.14 2.44 8.06 -2.91 -0.02 2.41 16 32 H 0.15 2.25 8.03 -2.91 -0.02 2.22 16 33 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.06 1.50 7.42 -2.39 -0.02 1.49 16 36 H 0.42 10.58 7.05 -96.74 -0.68 9.89 16 37 H 0.12 5.25 8.14 -2.39 -0.02 5.23 16 38 H 0.13 4.26 7.36 -2.39 -0.02 4.24 16 39 H 0.26 13.94 8.32 -92.71 -0.77 13.17 16 40 H 0.08 3.49 8.14 -2.39 -0.02 3.47 16 41 H 0.10 3.71 8.14 -2.38 -0.02 3.70 16 42 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 43 H 0.06 3.13 8.14 -2.38 -0.02 3.11 16 44 H 0.13 2.39 6.83 -2.91 -0.02 2.37 16 45 H 0.15 2.14 6.30 -2.91 -0.02 2.12 16 Total: -1.00 -72.26 385.58 0.45 -71.81 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: 0.32 Total: 30.36 kcal Atomic # 6 Polarization: -73.11 SS G_CDS: 4.42 Total: -68.69 kcal Atomic # 7 Polarization: -81.16 SS G_CDS: -0.64 Total: -81.80 kcal Atomic # 8 Polarization: -95.38 SS G_CDS: -5.38 Total: -100.76 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: 103.02 SS G_CDS: -0.29 Total: 102.73 kcal Total: -72.26 0.45 -71.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451128857.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.258 kcal (2) G-P(sol) polarization free energy of solvation -72.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds