Wall clock time and date at job start Tue Mar 31 2020 23:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46941 * 2 1 4 4 C 1.53007 * 109.46795 * 240.00692 * 2 1 3 5 5 C 1.50701 * 109.46705 * 175.00278 * 4 2 1 6 6 C 1.38281 * 119.97476 * 89.99945 * 5 4 2 7 7 C 1.38243 * 120.11258 * 180.02562 * 6 5 4 8 8 C 1.38164 * 120.05720 * 0.02635 * 7 6 5 9 9 C 1.38719 * 119.94162 * 359.97002 * 8 7 6 10 10 O 1.35902 * 120.05287 * 179.97438 * 9 8 7 11 11 C 1.38126 * 119.96887 * 270.26956 * 5 4 2 12 12 N 1.46493 * 109.46942 * 120.00789 * 2 1 3 13 13 S 1.65601 * 119.99664 * 264.99664 * 12 2 1 14 14 O 1.42099 * 104.27636 * 181.07594 * 13 12 2 15 15 O 1.42105 * 104.27925 * 308.92863 * 13 12 2 16 16 C 1.81395 * 104.45269 * 65.00356 * 13 12 2 17 17 C 1.52993 * 109.47705 * 172.69198 * 16 13 12 18 18 C 1.50702 * 115.55168 * 65.15667 * 17 16 13 19 19 H 1.08000 * 119.99988 * 264.90728 * 18 17 16 20 20 C 1.37872 * 119.99858 * 84.90894 * 18 17 16 21 21 N 1.31514 * 120.00360 * 352.83056 * 20 18 17 22 22 Si 1.86802 * 120.00083 * 172.83821 * 20 18 17 23 23 H 1.48502 * 109.46798 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47578 * 119.99526 * 22 20 18 25 25 H 1.48498 * 109.47075 * 239.99990 * 22 20 18 26 26 C 1.53003 * 117.49755 * 279.49137 * 17 16 13 27 27 C 1.52995 * 117.50123 * 210.83225 * 17 16 13 28 28 H 1.09003 * 109.47052 * 59.99655 * 1 2 3 29 29 H 1.08995 * 109.46878 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47077 * 299.99524 * 1 2 3 31 31 H 1.08993 * 109.47202 * 54.99761 * 4 2 1 32 32 H 1.09003 * 109.46666 * 294.99595 * 4 2 1 33 33 H 1.07999 * 119.94677 * 0.04262 * 6 5 4 34 34 H 1.08001 * 119.97354 * 179.97438 * 7 6 5 35 35 H 1.08000 * 120.03406 * 179.97438 * 8 7 6 36 36 H 0.96690 * 113.99970 * 90.00447 * 10 9 8 37 37 H 1.08001 * 120.02601 * 0.02562 * 11 5 4 38 38 H 0.97003 * 120.00648 * 85.00319 * 12 2 1 39 39 H 1.09003 * 109.47120 * 292.69365 * 16 13 12 40 40 H 1.08996 * 109.47112 * 52.68641 * 16 13 12 41 41 H 0.96994 * 120.00544 * 185.03350 * 21 20 18 42 42 H 1.09004 * 117.49664 * 359.97438 * 26 17 16 43 43 H 1.08998 * 117.50216 * 145.01667 * 26 17 16 44 44 H 1.09001 * 117.50056 * 214.97541 * 27 17 16 45 45 H 1.09002 * 117.50055 * 359.97189 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 6 4.3288 -1.5822 -0.7152 7 6 5.7069 -1.4872 -0.7712 8 6 6.3013 -0.4247 -1.4243 9 6 5.5141 0.5470 -2.0246 10 8 6.0965 1.5935 -2.6671 11 6 4.1313 0.4518 -1.9630 12 7 2.0183 -0.6907 1.1960 13 16 2.4122 0.1769 2.5504 14 8 2.8607 -0.8032 3.4764 15 8 3.2876 1.1904 2.0751 16 6 0.8409 0.8986 3.0986 17 6 1.0382 1.5812 4.4535 18 6 1.9576 2.7752 4.4522 19 1 2.9997 2.6546 4.7088 20 6 1.4684 4.0216 4.1234 21 7 0.2383 4.1481 3.6755 22 14 2.5527 5.5307 4.3139 23 1 3.8827 5.1221 4.8329 24 1 2.7176 6.1916 2.9944 25 1 1.9198 6.4779 5.2664 26 6 1.0362 0.6925 5.6991 27 6 -0.1551 1.6095 5.4107 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6054 -0.2616 -2.1370 32 1 1.7516 -1.7714 -1.2058 33 1 3.8662 -2.4135 -0.2041 34 1 6.3193 -2.2438 -0.3033 35 1 7.3779 -0.3506 -1.4674 36 1 6.2670 1.4333 -3.6053 37 1 3.5162 1.2096 -2.4255 38 1 2.1110 -1.6563 1.1947 39 1 0.5038 1.6334 2.3673 40 1 0.0931 0.1114 3.1937 41 1 -0.0820 5.0130 3.3754 42 1 0.8939 -0.3783 5.5531 43 1 1.6996 0.9717 6.5176 44 1 -0.2749 2.4916 6.0397 45 1 -1.0809 1.1423 5.0749 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451222505.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:02 Heat of formation + Delta-G solvation = -76.913437 kcal Electronic energy + Delta-G solvation = -28354.524319 eV Core-core repulsion = 24464.739436 eV Total energy + Delta-G solvation = -3889.784883 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.84438 -37.56534 -36.74051 -36.26125 -35.92657 -34.99036 -32.03994 -32.00691 -29.85589 -29.74267 -28.17875 -26.51204 -25.42703 -22.63036 -22.08368 -21.19738 -20.95348 -19.72050 -18.71248 -18.09138 -16.94505 -16.50897 -16.39302 -15.98395 -15.50543 -15.14640 -15.06635 -14.69158 -14.39743 -14.11524 -13.85840 -13.73451 -13.55564 -13.10841 -12.76340 -12.39208 -12.31436 -12.00618 -11.89892 -11.77381 -11.61565 -11.50252 -11.23984 -11.20586 -11.02301 -10.94253 -10.93166 -10.82833 -10.53613 -10.45525 -10.42464 -10.07490 -9.70953 -9.25470 -8.93966 -8.77537 -8.55176 -8.54193 -8.07195 -6.12577 -4.22761 1.12876 1.27599 1.35115 3.30469 3.38504 3.46212 3.50382 3.62962 4.13553 4.39625 4.58136 4.68165 4.82558 4.90170 5.05360 5.10904 5.15069 5.17385 5.23327 5.27894 5.38577 5.46385 5.48430 5.57940 5.72246 5.78893 5.86680 5.89654 6.00063 6.01772 6.21443 6.28382 6.32581 6.38471 6.41660 6.42351 6.59668 6.63087 6.73617 6.82852 6.99958 7.25243 7.34400 7.40737 7.62934 7.82397 8.22275 8.83111 9.48615 10.95166 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012013 B = 0.004269 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.262816 B = 6556.912595 C = 7482.082211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.150 3.850 3 H 0.096 0.904 4 C -0.082 4.082 5 C -0.059 4.059 6 C -0.121 4.121 7 C -0.103 4.103 8 C -0.150 4.150 9 C 0.106 3.894 10 O -0.498 6.498 11 C -0.138 4.138 12 N -1.125 6.125 13 S 2.605 3.395 14 O -0.976 6.976 15 O -0.946 6.946 16 C -0.555 4.555 17 C 0.043 3.957 18 C -0.514 4.514 19 H 0.068 0.932 20 C 0.082 3.918 21 N -0.875 5.875 22 Si 0.891 3.109 23 H -0.268 1.268 24 H -0.280 1.280 25 H -0.282 1.282 26 C -0.208 4.208 27 C -0.141 4.141 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.385 0.615 37 H 0.128 0.872 38 H 0.407 0.593 39 H 0.134 0.866 40 H 0.098 0.902 41 H 0.262 0.738 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.982 -11.752 -14.100 18.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.042 3.958 3 H 0.114 0.886 4 C -0.121 4.121 5 C -0.059 4.059 6 C -0.139 4.139 7 C -0.121 4.121 8 C -0.169 4.169 9 C 0.062 3.938 10 O -0.307 6.307 11 C -0.156 4.156 12 N -0.881 5.881 13 S 2.702 3.298 14 O -0.967 6.967 15 O -0.936 6.936 16 C -0.688 4.688 17 C 0.041 3.959 18 C -0.551 4.551 19 H 0.086 0.914 20 C -0.122 4.122 21 N -0.511 5.511 22 Si 0.718 3.282 23 H -0.192 1.192 24 H -0.206 1.206 25 H -0.208 1.208 26 C -0.246 4.246 27 C -0.180 4.180 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.240 0.760 37 H 0.146 0.854 38 H 0.239 0.761 39 H 0.152 0.848 40 H 0.117 0.883 41 H 0.072 0.928 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.104 0.896 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.678 -11.058 -13.223 17.444 hybrid contribution -0.217 0.411 -0.495 0.679 sum 2.462 -10.647 -13.718 17.539 Atomic orbital electron populations 1.22463 0.95168 1.02690 1.03436 1.20749 0.93526 0.97197 0.84314 0.88616 1.20915 0.91082 1.01926 0.98192 1.19654 0.95575 0.94205 0.96502 1.21041 0.93639 0.99514 0.99686 1.21010 0.94910 0.97833 0.98374 1.21378 1.00185 0.94425 1.00902 1.18438 0.90601 0.87618 0.97164 1.84884 1.81737 1.37449 1.26635 1.21287 0.94114 0.98246 1.01983 1.56046 1.84570 1.19162 1.28346 1.05186 0.77975 0.74032 0.72603 1.93495 1.80491 1.60007 1.62693 1.93555 1.61581 1.59599 1.78856 1.30081 1.18738 1.09705 1.10301 1.18286 0.99457 0.95122 0.83063 1.20565 0.95050 0.90457 1.49071 0.91379 1.24936 0.94734 0.98900 0.93673 1.69979 1.15727 1.24728 1.40620 0.86536 0.81111 0.82500 0.78096 1.19206 1.20587 1.20833 1.23191 1.03530 0.95489 1.02347 1.22545 0.91136 0.99967 1.04359 0.91378 0.91983 0.91105 0.89621 0.90178 0.85976 0.85689 0.85702 0.75965 0.85402 0.76105 0.84832 0.88321 0.92810 0.90741 0.89561 0.89596 0.91571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.96 9.48 37.16 0.35 -1.61 16 2 C 0.15 1.93 2.80 -67.93 -0.19 1.74 16 3 H 0.10 1.46 7.48 -51.93 -0.39 1.07 16 4 C -0.08 -0.83 4.95 -27.88 -0.14 -0.97 16 5 C -0.06 -0.74 4.95 -104.65 -0.52 -1.26 16 6 C -0.12 -1.49 9.30 -39.56 -0.37 -1.85 16 7 C -0.10 -1.26 10.04 -39.61 -0.40 -1.66 16 8 C -0.15 -1.91 9.99 -39.43 -0.39 -2.30 16 9 C 0.11 1.42 6.71 -39.22 -0.26 1.16 16 10 O -0.50 -6.05 13.50 -19.43 -0.26 -6.31 16 11 C -0.14 -1.81 9.64 -39.43 -0.38 -2.19 16 12 N -1.13 -16.38 4.74 -4.89 -0.02 -16.40 16 13 S 2.61 53.33 5.16 -107.50 -0.55 52.78 16 14 O -0.98 -21.81 18.08 -57.54 -1.04 -22.85 16 15 O -0.95 -23.20 17.12 -57.54 -0.99 -24.19 16 16 C -0.56 -11.63 4.82 37.15 0.18 -11.45 16 17 C 0.04 1.06 1.33 -155.66 -0.21 0.85 16 18 C -0.51 -14.26 8.23 -34.44 -0.28 -14.55 16 19 H 0.07 1.95 7.82 -52.49 -0.41 1.54 16 20 C 0.08 2.27 5.38 -17.82 -0.10 2.18 16 21 N -0.87 -24.11 12.96 55.43 0.72 -23.39 16 22 Si 0.89 21.80 29.55 -169.99 -5.02 16.78 16 23 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 C -0.21 -4.64 9.96 -26.69 -0.27 -4.90 16 27 C -0.14 -3.23 9.47 -26.70 -0.25 -3.48 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.90 6.02 -51.93 -0.31 0.59 16 31 H 0.09 0.70 8.09 -51.93 -0.42 0.28 16 32 H 0.08 0.65 8.09 -51.93 -0.42 0.23 16 33 H 0.12 1.25 7.94 -52.49 -0.42 0.84 16 34 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 36 H 0.39 2.45 9.06 45.56 0.41 2.86 16 37 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 38 H 0.41 4.84 8.68 -34.47 -0.30 4.54 16 39 H 0.13 2.88 7.26 -51.92 -0.38 2.50 16 40 H 0.10 1.73 8.09 -51.93 -0.42 1.31 16 41 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 42 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 43 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 44 H 0.09 2.08 8.14 -51.93 -0.42 1.65 16 45 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 389.34 15.07 5.87 5.87 Total: -1.00 -35.79 389.34 -10.52 -46.31 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -5.99 Total: 11.72 kcal Atomic # 6 Polarization: -37.08 SS G_CDS: -3.22 Total: -40.31 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.70 Total: -39.80 kcal Atomic # 8 Polarization: -51.06 SS G_CDS: -2.29 Total: -53.35 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 53.33 SS G_CDS: -0.55 Total: 52.78 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.79 -10.52 -46.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451222505.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.607 kcal (2) G-P(sol) polarization free energy of solvation -35.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds