Wall clock time and date at job start Tue Mar 31 2020 23:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46755 * 2 1 4 4 C 1.52991 * 109.46941 * 119.99849 * 2 1 3 5 5 C 1.50697 * 109.47347 * 185.00068 * 4 2 1 6 6 C 1.38287 * 119.97174 * 89.99797 * 5 4 2 7 7 C 1.38247 * 120.11218 * 180.02562 * 6 5 4 8 8 C 1.38167 * 120.05662 * 359.95445 * 7 6 5 9 9 C 1.38717 * 119.94232 * 0.02562 * 8 7 6 10 10 O 1.35902 * 120.05402 * 180.02562 * 9 8 7 11 11 C 1.38125 * 119.97248 * 269.72939 * 5 4 2 12 12 N 1.46498 * 109.47239 * 239.99984 * 2 1 3 13 13 S 1.65598 * 119.99954 * 94.99673 * 12 2 1 14 14 O 1.42106 * 104.27645 * 181.06983 * 13 12 2 15 15 O 1.42092 * 104.28206 * 308.93242 * 13 12 2 16 16 C 1.81404 * 104.44684 * 65.00492 * 13 12 2 17 17 C 1.53001 * 109.46898 * 173.85582 * 16 13 12 18 18 C 1.50699 * 115.55244 * 65.19807 * 17 16 13 19 19 H 1.08008 * 119.99429 * 264.77943 * 18 17 16 20 20 C 1.37872 * 120.00363 * 84.77754 * 18 17 16 21 21 N 1.31514 * 119.99994 * 352.23566 * 20 18 17 22 22 Si 1.86807 * 119.99994 * 172.23026 * 20 18 17 23 23 H 1.48503 * 109.46842 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.46987 * 120.00339 * 22 20 18 25 25 H 1.48492 * 109.47187 * 240.00266 * 22 20 18 26 26 C 1.52995 * 117.49891 * 279.52017 * 17 16 13 27 27 C 1.53008 * 117.49673 * 210.86368 * 17 16 13 28 28 H 1.08999 * 109.47449 * 300.00254 * 1 2 3 29 29 H 1.09001 * 109.47221 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47290 * 60.00267 * 1 2 3 31 31 H 1.09000 * 109.47474 * 305.00190 * 4 2 1 32 32 H 1.09004 * 109.47269 * 64.99921 * 4 2 1 33 33 H 1.07993 * 119.94517 * 359.97438 * 6 5 4 34 34 H 1.08003 * 119.97535 * 179.97438 * 7 6 5 35 35 H 1.07995 * 120.03158 * 180.02562 * 8 7 6 36 36 H 0.96700 * 113.99907 * 90.00180 * 10 9 8 37 37 H 1.07997 * 120.02755 * 359.97438 * 11 5 4 38 38 H 0.96999 * 119.99778 * 275.00750 * 12 2 1 39 39 H 1.08998 * 109.46835 * 293.85150 * 16 13 12 40 40 H 1.08997 * 109.47563 * 53.85527 * 16 13 12 41 41 H 0.96997 * 119.99727 * 185.01186 * 21 20 18 42 42 H 1.09001 * 117.49796 * 0.02562 * 26 17 16 43 43 H 1.09001 * 117.50129 * 145.02129 * 26 17 16 44 44 H 1.08995 * 117.49671 * 214.97908 * 27 17 16 45 45 H 1.09000 * 117.49284 * 359.97281 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5418 -0.6149 1.3128 6 6 4.1319 0.4500 1.9687 7 6 5.5094 0.5507 2.0283 8 6 6.3001 -0.4135 1.4332 9 6 5.7107 -1.4829 0.7750 10 8 6.4863 -2.4328 0.1893 11 6 4.3279 -1.5841 0.7206 12 7 2.0184 -0.6906 -1.1961 13 16 2.4121 0.1772 -2.5505 14 8 2.8123 -0.8076 -3.4936 15 8 1.2752 0.9966 -2.7846 16 6 3.8313 1.1872 -2.0440 17 6 4.3893 1.9289 -3.2603 18 6 3.4701 2.9524 -3.8756 19 1 2.8468 2.6828 -4.7155 20 6 3.4246 4.2328 -3.3664 21 7 4.0644 4.5213 -2.2541 22 14 2.4544 5.5581 -4.2563 23 1 1.8303 4.9810 -5.4741 24 1 1.3943 6.0827 -3.3585 25 1 3.3668 6.6637 -4.6437 26 6 5.3101 1.1499 -4.2016 27 6 5.8903 2.2253 -3.2797 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 1.6053 -0.2617 2.1369 32 1 1.7516 -1.7715 1.2056 33 1 3.5156 1.2047 2.4344 34 1 5.9679 1.3835 2.5408 35 1 7.3762 -0.3347 1.4804 36 1 6.7113 -3.1710 0.7719 37 1 3.8666 -2.4180 0.2126 38 1 2.1109 -1.6562 -1.1948 39 1 3.5133 1.9096 -1.2924 40 1 4.6045 0.5433 -1.6249 41 1 3.9737 5.4015 -1.8568 42 1 5.5180 0.1088 -3.9546 43 1 5.2513 1.3778 -5.2659 44 1 6.2128 3.1602 -3.7378 45 1 6.4800 1.8922 -2.4256 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451222506.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:06 Heat of formation + Delta-G solvation = -76.726768 kcal Electronic energy + Delta-G solvation = -29006.936557 eV Core-core repulsion = 25117.159769 eV Total energy + Delta-G solvation = -3889.776788 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.87144 -37.53765 -36.68406 -36.26991 -35.90766 -34.97746 -31.99993 -31.90830 -30.16928 -29.45420 -28.08138 -26.52028 -25.40759 -22.60986 -22.09830 -21.14304 -20.95881 -19.70348 -18.62664 -18.09087 -16.96690 -16.42372 -16.33791 -16.02257 -15.55967 -15.14710 -14.97244 -14.69282 -14.33885 -14.15018 -13.80481 -13.61716 -13.57651 -13.02047 -12.70698 -12.50693 -12.24377 -11.94835 -11.81037 -11.79443 -11.63931 -11.46390 -11.23490 -11.16041 -11.07946 -10.97136 -10.90080 -10.71840 -10.52078 -10.46351 -10.37725 -10.05501 -9.68415 -9.21636 -8.89606 -8.82335 -8.54649 -8.52479 -8.02124 -6.10007 -4.19953 1.16951 1.24394 1.33443 3.30286 3.37923 3.45788 3.52201 3.61132 4.13495 4.40300 4.59152 4.67817 4.82229 4.93878 5.04394 5.11383 5.16356 5.21873 5.27477 5.29621 5.39980 5.45932 5.53779 5.60020 5.76005 5.85137 5.87643 5.93366 6.01719 6.07959 6.28887 6.37451 6.40179 6.42098 6.45348 6.46650 6.58201 6.69920 6.79605 6.81370 7.05512 7.28648 7.37496 7.45320 7.62045 7.84229 8.26296 8.85393 9.50585 10.97492 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011058 B = 0.005080 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.503388 B = 5510.033874 C = 6132.562702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.157 3.843 3 H 0.088 0.912 4 C -0.087 4.087 5 C -0.064 4.064 6 C -0.123 4.123 7 C -0.096 4.096 8 C -0.149 4.149 9 C 0.104 3.896 10 O -0.497 6.497 11 C -0.141 4.141 12 N -1.126 6.126 13 S 2.605 3.395 14 O -0.977 6.977 15 O -0.951 6.951 16 C -0.547 4.547 17 C 0.046 3.954 18 C -0.514 4.514 19 H 0.068 0.932 20 C 0.082 3.918 21 N -0.873 5.873 22 Si 0.891 3.109 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.283 1.283 26 C -0.209 4.209 27 C -0.140 4.140 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.386 0.614 37 H 0.126 0.874 38 H 0.407 0.593 39 H 0.130 0.870 40 H 0.098 0.902 41 H 0.261 0.739 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.139 -11.523 13.536 17.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.049 3.951 3 H 0.106 0.894 4 C -0.125 4.125 5 C -0.064 4.064 6 C -0.141 4.141 7 C -0.114 4.114 8 C -0.167 4.167 9 C 0.060 3.940 10 O -0.307 6.307 11 C -0.159 4.159 12 N -0.882 5.882 13 S 2.702 3.298 14 O -0.967 6.967 15 O -0.941 6.941 16 C -0.680 4.680 17 C 0.043 3.957 18 C -0.551 4.551 19 H 0.086 0.914 20 C -0.123 4.123 21 N -0.509 5.509 22 Si 0.718 3.282 23 H -0.193 1.193 24 H -0.207 1.207 25 H -0.209 1.209 26 C -0.246 4.246 27 C -0.179 4.179 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.241 0.759 37 H 0.144 0.856 38 H 0.239 0.761 39 H 0.148 0.852 40 H 0.116 0.884 41 H 0.071 0.929 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.330 -10.853 12.314 16.418 hybrid contribution 0.265 0.286 0.608 0.722 sum -0.065 -10.567 12.923 16.693 Atomic orbital electron populations 1.22326 0.94872 1.02353 1.03396 1.20672 0.94294 0.96165 0.83961 0.89415 1.20987 0.91022 1.02079 0.98440 1.19692 0.95470 0.94427 0.96823 1.21101 0.94963 0.97807 1.00258 1.21022 0.93666 0.98036 0.98685 1.21411 1.00516 0.95814 0.98995 1.18475 0.89214 0.90996 0.95309 1.84892 1.70314 1.34481 1.40982 1.21293 0.92789 1.00700 1.01154 1.56069 1.82758 1.18832 1.30495 1.05181 0.77274 0.74520 0.72801 1.93499 1.84954 1.59122 1.59147 1.93526 1.47705 1.69861 1.82986 1.29906 1.16586 1.11882 1.09671 1.18261 0.90930 0.96038 0.90446 1.20569 1.23667 0.94096 1.16762 0.91403 1.24940 0.94401 0.98232 0.94687 1.69999 1.41101 1.21781 1.17997 0.86541 0.79739 0.81459 0.80489 1.19251 1.20671 1.20888 1.23188 1.08465 0.95554 0.97424 1.22524 0.97472 0.98208 0.99715 0.91851 0.92422 0.90409 0.89486 0.90257 0.85628 0.85599 0.85684 0.75915 0.85602 0.76097 0.85165 0.88384 0.92901 0.90725 0.89620 0.89692 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 9.52 37.16 0.35 -1.71 16 2 C 0.16 2.03 2.66 -67.94 -0.18 1.85 16 3 H 0.09 1.26 7.29 -51.93 -0.38 0.88 16 4 C -0.09 -0.85 4.95 -27.89 -0.14 -0.99 16 5 C -0.06 -0.74 4.95 -104.65 -0.52 -1.26 16 6 C -0.12 -1.44 9.70 -39.56 -0.38 -1.83 16 7 C -0.10 -1.14 10.04 -39.60 -0.40 -1.54 16 8 C -0.15 -1.83 9.99 -39.43 -0.39 -2.22 16 9 C 0.10 1.32 6.71 -39.21 -0.26 1.06 16 10 O -0.50 -5.85 13.50 -19.43 -0.26 -6.11 16 11 C -0.14 -1.70 9.26 -39.43 -0.37 -2.07 16 12 N -1.13 -16.90 4.75 -4.89 -0.02 -16.93 16 13 S 2.61 54.37 5.11 -107.50 -0.55 53.82 16 14 O -0.98 -22.47 18.08 -57.54 -1.04 -23.51 16 15 O -0.95 -22.85 16.78 -57.54 -0.97 -23.81 16 16 C -0.55 -11.98 5.76 37.16 0.21 -11.77 16 17 C 0.05 1.14 1.32 -155.66 -0.21 0.94 16 18 C -0.51 -14.31 8.18 -34.44 -0.28 -14.59 16 19 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 20 C 0.08 2.26 5.38 -17.82 -0.10 2.17 16 21 N -0.87 -24.06 12.98 55.43 0.72 -23.34 16 22 Si 0.89 21.60 29.55 -169.99 -5.02 16.58 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 C -0.21 -4.85 9.96 -26.70 -0.27 -5.11 16 27 C -0.14 -3.33 9.49 -26.69 -0.25 -3.58 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 1.16 7.42 -51.93 -0.39 0.78 16 31 H 0.09 0.69 8.08 -51.93 -0.42 0.27 16 32 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 33 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 34 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 35 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 36 H 0.39 2.40 9.06 45.56 0.41 2.82 16 37 H 0.13 1.36 7.97 -52.49 -0.42 0.95 16 38 H 0.41 5.15 8.71 -34.47 -0.30 4.84 16 39 H 0.13 2.93 7.63 -51.93 -0.40 2.54 16 40 H 0.10 1.97 8.09 -51.93 -0.42 1.55 16 41 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 42 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 43 H 0.09 1.95 8.14 -51.93 -0.42 1.52 16 44 H 0.08 2.11 8.14 -51.93 -0.42 1.68 16 45 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 LS Contribution 391.45 15.07 5.90 5.90 Total: -1.00 -34.99 391.45 -10.50 -45.49 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -6.08 Total: 12.57 kcal Atomic # 6 Polarization: -37.47 SS G_CDS: -3.17 Total: -40.65 kcal Atomic # 7 Polarization: -40.97 SS G_CDS: 0.70 Total: -40.27 kcal Atomic # 8 Polarization: -51.17 SS G_CDS: -2.27 Total: -53.44 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 54.37 SS G_CDS: -0.55 Total: 53.82 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.99 -10.50 -45.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451222506.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.241 kcal (2) G-P(sol) polarization free energy of solvation -34.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds