Wall clock time and date at job start Tue Mar 31 2020 23:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46755 * 2 1 4 4 C 1.52991 * 109.46941 * 119.99849 * 2 1 3 5 5 C 1.50697 * 109.47347 * 185.00068 * 4 2 1 6 6 C 1.38287 * 119.97174 * 89.99797 * 5 4 2 7 7 C 1.38247 * 120.11218 * 180.02562 * 6 5 4 8 8 C 1.38167 * 120.05662 * 359.95445 * 7 6 5 9 9 C 1.38717 * 119.94232 * 0.02562 * 8 7 6 10 10 O 1.35902 * 120.05402 * 180.02562 * 9 8 7 11 11 C 1.38125 * 119.97248 * 269.72939 * 5 4 2 12 12 N 1.46498 * 109.47239 * 239.99984 * 2 1 3 13 13 S 1.65598 * 119.99954 * 94.99673 * 12 2 1 14 14 O 1.42106 * 104.27645 * 181.06983 * 13 12 2 15 15 O 1.42092 * 104.28206 * 308.93242 * 13 12 2 16 16 C 1.81404 * 104.44684 * 65.00492 * 13 12 2 17 17 C 1.53001 * 109.46898 * 173.85582 * 16 13 12 18 18 C 1.50699 * 115.55244 * 65.19807 * 17 16 13 19 19 H 1.08008 * 119.99429 * 264.77943 * 18 17 16 20 20 C 1.37872 * 120.00363 * 84.77754 * 18 17 16 21 21 N 1.31514 * 119.99994 * 352.23566 * 20 18 17 22 22 Si 1.86807 * 119.99994 * 172.23026 * 20 18 17 23 23 H 1.48503 * 109.46842 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.46987 * 120.00339 * 22 20 18 25 25 H 1.48492 * 109.47187 * 240.00266 * 22 20 18 26 26 C 1.52995 * 117.49891 * 279.52017 * 17 16 13 27 27 C 1.53008 * 117.49673 * 210.86368 * 17 16 13 28 28 H 1.08999 * 109.47449 * 300.00254 * 1 2 3 29 29 H 1.09001 * 109.47221 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47290 * 60.00267 * 1 2 3 31 31 H 1.09000 * 109.47474 * 305.00190 * 4 2 1 32 32 H 1.09004 * 109.47269 * 64.99921 * 4 2 1 33 33 H 1.07993 * 119.94517 * 359.97438 * 6 5 4 34 34 H 1.08003 * 119.97535 * 179.97438 * 7 6 5 35 35 H 1.07995 * 120.03158 * 180.02562 * 8 7 6 36 36 H 0.96700 * 113.99907 * 90.00180 * 10 9 8 37 37 H 1.07997 * 120.02755 * 359.97438 * 11 5 4 38 38 H 0.96999 * 119.99778 * 275.00750 * 12 2 1 39 39 H 1.08998 * 109.46835 * 293.85150 * 16 13 12 40 40 H 1.08997 * 109.47563 * 53.85527 * 16 13 12 41 41 H 0.96997 * 119.99727 * 185.01186 * 21 20 18 42 42 H 1.09001 * 117.49796 * 0.02562 * 26 17 16 43 43 H 1.09001 * 117.50129 * 145.02129 * 26 17 16 44 44 H 1.08995 * 117.49671 * 214.97908 * 27 17 16 45 45 H 1.09000 * 117.49284 * 359.97281 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5418 -0.6149 1.3128 6 6 4.1319 0.4500 1.9687 7 6 5.5094 0.5507 2.0283 8 6 6.3001 -0.4135 1.4332 9 6 5.7107 -1.4829 0.7750 10 8 6.4863 -2.4328 0.1893 11 6 4.3279 -1.5841 0.7206 12 7 2.0184 -0.6906 -1.1961 13 16 2.4121 0.1772 -2.5505 14 8 2.8123 -0.8076 -3.4936 15 8 1.2752 0.9966 -2.7846 16 6 3.8313 1.1872 -2.0440 17 6 4.3893 1.9289 -3.2603 18 6 3.4701 2.9524 -3.8756 19 1 2.8468 2.6828 -4.7155 20 6 3.4246 4.2328 -3.3664 21 7 4.0644 4.5213 -2.2541 22 14 2.4544 5.5581 -4.2563 23 1 1.8303 4.9810 -5.4741 24 1 1.3943 6.0827 -3.3585 25 1 3.3668 6.6637 -4.6437 26 6 5.3101 1.1499 -4.2016 27 6 5.8903 2.2253 -3.2797 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 1.6053 -0.2617 2.1369 32 1 1.7516 -1.7715 1.2056 33 1 3.5156 1.2047 2.4344 34 1 5.9679 1.3835 2.5408 35 1 7.3762 -0.3347 1.4804 36 1 6.7113 -3.1710 0.7719 37 1 3.8666 -2.4180 0.2126 38 1 2.1109 -1.6562 -1.1948 39 1 3.5133 1.9096 -1.2924 40 1 4.6045 0.5433 -1.6249 41 1 3.9737 5.4015 -1.8568 42 1 5.5180 0.1088 -3.9546 43 1 5.2513 1.3778 -5.2659 44 1 6.2128 3.1602 -3.7378 45 1 6.4800 1.8922 -2.4256 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451222506.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:05 Heat of formation + Delta-G solvation = -101.628579 kcal Electronic energy + Delta-G solvation = -29008.016380 eV Core-core repulsion = 25117.159769 eV Total energy + Delta-G solvation = -3890.856612 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.73891 -38.59294 -38.50987 -37.89435 -37.02747 -36.72592 -34.08644 -32.88185 -31.15521 -30.42208 -29.86656 -27.49231 -27.37527 -23.48580 -23.08656 -23.02324 -21.91581 -21.54396 -20.27159 -18.98272 -18.50715 -18.29532 -17.28332 -17.23795 -16.77348 -16.68781 -16.55484 -16.08660 -15.87892 -15.54805 -15.09637 -14.96582 -14.57413 -14.50239 -13.83138 -13.76200 -13.70838 -13.38495 -13.16439 -13.09587 -12.89690 -12.88013 -12.85739 -12.80871 -12.62899 -12.44461 -12.36799 -12.25103 -12.12206 -11.95998 -11.79832 -11.57126 -11.31213 -10.88383 -10.56979 -10.51764 -9.88361 -9.71338 -9.43361 -8.18559 -6.33707 -0.48283 0.36832 0.44763 1.37014 1.40011 1.51542 2.05897 2.39816 2.74941 2.93947 3.07810 3.33178 3.35668 3.46951 3.78920 3.92154 3.98717 4.05589 4.24991 4.27017 4.27864 4.41621 4.46698 4.51952 4.54187 4.57536 4.64986 4.78670 4.82770 4.93003 4.97693 5.00182 5.06518 5.16995 5.19291 5.32717 5.43685 5.46884 5.53103 5.54276 5.55168 5.70984 5.71652 6.00516 6.22012 6.24649 6.71839 6.92238 7.38243 8.88517 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011058 B = 0.005080 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2531.503388 B = 5510.033874 C = 6132.562702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.148 3.852 3 H 0.070 0.930 4 C -0.077 4.077 5 C -0.068 4.068 6 C -0.135 4.135 7 C -0.107 4.107 8 C -0.165 4.165 9 C 0.092 3.908 10 O -0.513 6.513 11 C -0.153 4.153 12 N -1.107 6.107 13 S 2.623 3.377 14 O -1.001 7.001 15 O -0.988 6.988 16 C -0.541 4.541 17 C 0.019 3.981 18 C -0.535 4.535 19 H 0.047 0.953 20 C 0.045 3.955 21 N -0.888 5.888 22 Si 0.936 3.064 23 H -0.274 1.274 24 H -0.274 1.274 25 H -0.272 1.272 26 C -0.201 4.201 27 C -0.136 4.136 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.042 0.958 31 H 0.114 0.886 32 H 0.102 0.898 33 H 0.140 0.860 34 H 0.138 0.862 35 H 0.131 0.869 36 H 0.407 0.593 37 H 0.137 0.863 38 H 0.421 0.579 39 H 0.121 0.879 40 H 0.114 0.886 41 H 0.266 0.734 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.371 -12.366 15.112 19.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.042 3.958 3 H 0.088 0.912 4 C -0.116 4.116 5 C -0.069 4.069 6 C -0.153 4.153 7 C -0.125 4.125 8 C -0.183 4.183 9 C 0.048 3.952 10 O -0.326 6.326 11 C -0.171 4.171 12 N -0.868 5.868 13 S 2.719 3.281 14 O -0.992 6.992 15 O -0.977 6.977 16 C -0.673 4.673 17 C 0.017 3.983 18 C -0.572 4.572 19 H 0.066 0.934 20 C -0.158 4.158 21 N -0.524 5.524 22 Si 0.762 3.238 23 H -0.199 1.199 24 H -0.199 1.199 25 H -0.197 1.197 26 C -0.238 4.238 27 C -0.176 4.176 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.062 0.938 31 H 0.132 0.868 32 H 0.120 0.880 33 H 0.158 0.842 34 H 0.156 0.844 35 H 0.149 0.851 36 H 0.266 0.734 37 H 0.155 0.845 38 H 0.257 0.743 39 H 0.139 0.861 40 H 0.132 0.868 41 H 0.075 0.925 42 H 0.109 0.891 43 H 0.103 0.897 44 H 0.087 0.913 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.820 -11.711 13.897 18.192 hybrid contribution 0.449 0.495 0.164 0.688 sum -0.371 -11.216 14.061 17.990 Atomic orbital electron populations 1.22320 0.93937 1.03622 1.03020 1.20933 0.95073 0.95638 0.84183 0.91164 1.20993 0.89773 1.03333 0.97458 1.19906 0.96417 0.94114 0.96415 1.21392 0.95173 0.98303 1.00440 1.21279 0.94085 0.98375 0.98754 1.21603 1.01094 0.96121 0.99483 1.18668 0.89735 0.91367 0.95412 1.84823 1.70295 1.35301 1.42159 1.21506 0.92764 1.01364 1.01487 1.55536 1.82157 1.19271 1.29819 1.04336 0.76360 0.73978 0.73424 1.93455 1.85151 1.59426 1.61122 1.93483 1.48877 1.71180 1.84182 1.29768 1.17613 1.11916 1.08042 1.18384 0.91127 0.96744 0.92076 1.20689 1.24336 0.95496 1.16711 0.93449 1.25503 0.95346 0.99637 0.95335 1.70041 1.41578 1.22324 1.18459 0.85836 0.78996 0.79605 0.79407 1.19892 1.19905 1.19686 1.23221 1.07191 0.96165 0.97206 1.22451 0.97027 0.97807 1.00266 0.89197 0.90351 0.93843 0.86764 0.87952 0.84187 0.84416 0.85075 0.73412 0.84544 0.74287 0.86110 0.86750 0.92506 0.89130 0.89732 0.91278 0.90192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.72 9.52 71.98 0.69 -3.04 16 2 C 0.15 3.54 2.66 44.99 0.12 3.66 16 3 H 0.07 1.95 7.29 -2.38 -0.02 1.93 16 4 C -0.08 -1.25 4.95 29.84 0.15 -1.10 16 5 C -0.07 -1.42 4.95 -19.88 -0.10 -1.51 16 6 C -0.14 -2.91 9.70 22.28 0.22 -2.69 16 7 C -0.11 -2.41 10.04 22.26 0.22 -2.18 16 8 C -0.16 -3.88 9.99 22.37 0.22 -3.66 16 9 C 0.09 2.22 6.71 22.51 0.15 2.37 16 10 O -0.51 -11.39 13.50 -92.45 -1.25 -12.63 16 11 C -0.15 -3.38 9.26 22.37 0.21 -3.18 16 12 N -1.11 -31.49 4.75 -169.40 -0.80 -32.30 16 13 S 2.62 108.96 5.11 -56.49 -0.29 108.67 16 14 O -1.00 -45.70 18.08 -127.65 -2.31 -48.00 16 15 O -0.99 -48.18 16.78 -127.65 -2.14 -50.32 16 16 C -0.54 -23.57 5.76 71.98 0.41 -23.16 16 17 C 0.02 0.95 1.32 -52.93 -0.07 0.88 16 18 C -0.54 -30.30 8.18 25.60 0.21 -30.09 16 19 H 0.05 2.80 7.83 -2.91 -0.02 2.78 16 20 C 0.05 2.49 5.38 84.65 0.46 2.95 16 21 N -0.89 -48.96 12.98 21.45 0.28 -48.68 16 22 Si 0.94 44.33 29.55 68.60 2.03 46.36 16 23 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 24 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 25 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 26 C -0.20 -9.24 9.96 30.62 0.30 -8.94 16 27 C -0.14 -6.47 9.49 30.62 0.29 -6.18 16 28 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.04 1.26 7.42 -2.39 -0.02 1.24 16 31 H 0.11 1.30 8.08 -2.39 -0.02 1.28 16 32 H 0.10 1.23 8.08 -2.39 -0.02 1.21 16 33 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 34 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 35 H 0.13 2.78 8.06 -2.91 -0.02 2.76 16 36 H 0.41 4.49 9.06 -74.06 -0.67 3.82 16 37 H 0.14 2.62 7.97 -2.91 -0.02 2.59 16 38 H 0.42 9.68 8.71 -96.75 -0.84 8.83 16 39 H 0.12 5.47 7.63 -2.39 -0.02 5.46 16 40 H 0.11 4.49 8.09 -2.39 -0.02 4.47 16 41 H 0.27 13.82 8.32 -92.71 -0.77 13.05 16 42 H 0.09 3.84 8.14 -2.39 -0.02 3.83 16 43 H 0.08 3.85 8.14 -2.39 -0.02 3.84 16 44 H 0.07 3.46 8.14 -2.39 -0.02 3.44 16 45 H 0.08 3.50 8.14 -2.39 -0.02 3.48 16 Total: -1.00 -75.25 391.45 -1.51 -76.76 By element: Atomic # 1 Polarization: 36.55 SS G_CDS: -0.51 Total: 36.04 kcal Atomic # 6 Polarization: -79.37 SS G_CDS: 3.48 Total: -75.89 kcal Atomic # 7 Polarization: -80.45 SS G_CDS: -0.53 Total: -80.98 kcal Atomic # 8 Polarization: -105.26 SS G_CDS: -5.70 Total: -110.96 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: 108.96 SS G_CDS: -0.29 Total: 108.67 kcal Total: -75.25 -1.51 -76.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451222506.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.865 kcal (2) G-P(sol) polarization free energy of solvation -75.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds