Wall clock time and date at job start Tue Mar 31 2020 22:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47080 * 2 1 4 4 C 1.50700 * 109.47615 * 119.99765 * 2 1 3 5 5 H 1.08002 * 119.99830 * 124.66140 * 4 2 1 6 6 C 1.37879 * 119.99932 * 304.67170 * 4 2 1 7 7 N 1.31506 * 119.99955 * 351.94256 * 6 4 2 8 8 Si 1.86797 * 119.99806 * 171.94591 * 6 4 2 9 9 H 1.48503 * 109.47338 * 359.97438 * 8 6 4 10 10 H 1.48504 * 109.47054 * 119.99866 * 8 6 4 11 11 H 1.48504 * 109.47202 * 239.99612 * 8 6 4 12 12 C 1.53002 * 109.47070 * 240.00043 * 2 1 3 13 13 S 1.81401 * 109.47071 * 59.99711 * 12 2 1 14 14 O 1.42099 * 110.54100 * 291.62461 * 13 12 2 15 15 O 1.42102 * 110.54031 * 68.37903 * 13 12 2 16 16 N 1.65597 * 104.45014 * 180.02562 * 13 12 2 17 17 C 1.46505 * 120.00123 * 64.99577 * 16 13 12 18 18 H 1.08999 * 110.72324 * 21.59264 * 17 16 13 19 19 C 1.54346 * 110.82810 * 257.96006 * 17 16 13 20 20 C 1.51378 * 105.16740 * 215.44220 * 19 17 16 21 21 C 1.38545 * 130.35552 * 197.20953 * 20 19 17 22 22 C 1.38128 * 120.33121 * 179.97438 * 21 20 19 23 23 C 1.38157 * 119.99910 * 0.02562 * 22 21 20 24 24 C 1.38603 * 119.87420 * 0.02562 * 23 22 21 25 25 O 1.35898 * 119.95327 * 179.97438 * 24 23 22 26 26 C 1.38124 * 109.76206 * 17.18937 * 20 19 17 27 27 C 1.51361 * 109.78324 * 359.97438 * 26 20 19 28 28 H 1.09008 * 109.46960 * 291.93835 * 1 2 3 29 29 H 1.08996 * 109.47522 * 51.94334 * 1 2 3 30 30 H 1.09003 * 109.47195 * 171.94628 * 1 2 3 31 31 H 1.09000 * 109.47116 * 188.34704 * 3 2 1 32 32 H 1.08997 * 109.46816 * 308.34437 * 3 2 1 33 33 H 1.08993 * 109.47075 * 68.34533 * 3 2 1 34 34 H 0.97004 * 120.00219 * 5.68158 * 7 6 4 35 35 H 1.09002 * 109.47114 * 180.02562 * 12 2 1 36 36 H 1.08995 * 109.47082 * 299.99836 * 12 2 1 37 37 H 0.96997 * 120.00351 * 245.00567 * 16 13 12 38 38 H 1.08996 * 110.30134 * 334.36603 * 19 17 16 39 39 H 1.08998 * 110.30331 * 96.51517 * 19 17 16 40 40 H 1.07998 * 119.83350 * 359.95663 * 21 20 19 41 41 H 1.08008 * 119.99690 * 180.02562 * 22 21 20 42 42 H 1.08004 * 120.06574 * 180.02562 * 23 22 21 43 43 H 0.96698 * 114.00203 * 269.98318 * 25 24 23 44 44 H 1.09002 * 110.30445 * 223.89664 * 27 26 20 45 45 H 1.08998 * 110.30345 * 101.74552 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.7140 -1.5425 1.1331 6 6 1.6218 -0.2980 2.4805 7 7 0.9218 0.8076 2.6111 8 14 2.0600 -1.3098 3.9883 9 1 2.8466 -2.4996 3.5746 10 1 2.8662 -0.4830 4.9220 11 1 0.8152 -1.7515 4.6669 12 6 2.0399 -0.7213 -1.2493 13 16 1.4352 0.1339 -2.7304 14 8 0.0278 -0.0184 -2.8543 15 8 2.0479 1.4100 -2.8544 16 7 2.0528 -0.7408 -3.9936 17 6 1.6231 -2.1253 -4.2054 18 1 0.6620 -2.3086 -3.7250 19 6 2.6928 -3.1156 -3.6981 20 6 2.6456 -4.2793 -4.6651 21 6 3.1358 -5.5692 -4.5412 22 6 2.9749 -6.4783 -5.5686 23 6 2.3227 -6.1029 -6.7273 24 6 1.8315 -4.8133 -6.8562 25 8 1.1902 -4.4422 -7.9954 26 6 1.9925 -3.8995 -5.8214 27 6 1.5549 -2.4546 -5.7116 28 1 -0.3633 0.3840 0.9533 29 1 -0.3634 0.6335 -0.8091 30 1 -0.3634 -1.0175 -0.1440 31 1 3.1197 1.4462 -0.1492 32 1 1.5600 1.9975 -0.8060 33 1 1.8035 1.9114 0.9551 34 1 0.6238 1.2889 1.8234 35 1 3.1300 -0.7217 -1.2490 36 1 1.6766 -1.7489 -1.2493 37 1 2.6992 -0.3366 -4.5933 38 1 3.6779 -2.6495 -3.7150 39 1 2.4496 -3.4513 -2.6900 40 1 3.6467 -5.8652 -3.6369 41 1 3.3589 -7.4826 -5.4661 42 1 2.1959 -6.8130 -7.5311 43 1 1.7739 -4.0764 -8.6740 44 1 0.5351 -2.3393 -6.0786 45 1 2.2339 -1.8104 -6.2702 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451456724.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:16 Heat of formation + Delta-G solvation = -112.831062 kcal Electronic energy + Delta-G solvation = -28016.654843 eV Core-core repulsion = 24125.312456 eV Total energy + Delta-G solvation = -3891.342388 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.41237 -38.69708 -38.67556 -38.14701 -37.09181 -36.95977 -33.85094 -33.50024 -31.29685 -28.85740 -28.62314 -28.07523 -27.99715 -26.91646 -23.44747 -22.15757 -22.01329 -21.44203 -20.56251 -19.21022 -18.92613 -18.49568 -17.56919 -17.11827 -16.91292 -16.61879 -16.29591 -15.98243 -15.64030 -15.39876 -15.07591 -14.87815 -14.76251 -14.60526 -13.95666 -13.88894 -13.83878 -13.57985 -13.49456 -13.20399 -13.11434 -12.97937 -12.88875 -12.70660 -12.64576 -12.39238 -12.36216 -12.18185 -12.10890 -11.93541 -11.86033 -11.78828 -11.73157 -11.45879 -10.65354 -10.43505 -10.19272 -9.54139 -9.49357 -8.39325 -6.27091 -0.71166 0.30028 0.33553 1.58001 1.65294 1.76195 1.80446 2.60328 2.65268 2.76083 3.18213 3.24461 3.29144 3.35474 3.51193 3.81491 3.93821 3.98990 4.02118 4.09154 4.22045 4.32266 4.34356 4.49751 4.57879 4.60910 4.65100 4.69090 4.75961 4.81975 4.83211 4.85775 5.03130 5.09294 5.12947 5.15078 5.18975 5.43238 5.49481 5.54237 5.59542 5.62136 5.91868 6.04784 6.09848 6.28515 6.69231 6.86587 7.51877 8.86458 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015286 B = 0.003235 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.286577 B = 8653.914547 C =10002.141352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.054 3.946 3 C -0.171 4.171 4 C -0.588 4.588 5 H 0.059 0.941 6 C -0.025 4.025 7 N -0.944 5.944 8 Si 1.113 2.887 9 H -0.268 1.268 10 H -0.286 1.286 11 H -0.285 1.285 12 C -0.578 4.578 13 S 2.612 3.388 14 O -0.991 6.991 15 O -0.990 6.990 16 N -1.099 6.099 17 C 0.142 3.858 18 H 0.098 0.902 19 C -0.107 4.107 20 C -0.085 4.085 21 C -0.124 4.124 22 C -0.101 4.101 23 C -0.154 4.154 24 C 0.108 3.892 25 O -0.510 6.510 26 C -0.138 4.138 27 C -0.074 4.074 28 H 0.059 0.941 29 H 0.038 0.962 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.037 0.963 33 H 0.057 0.943 34 H 0.276 0.724 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.426 0.574 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.139 0.861 41 H 0.154 0.846 42 H 0.146 0.854 43 H 0.407 0.593 44 H 0.080 0.920 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.972 -13.960 -19.813 25.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.052 3.948 3 C -0.229 4.229 4 C -0.627 4.627 5 H 0.077 0.923 6 C -0.224 4.224 7 N -0.585 5.585 8 Si 0.936 3.064 9 H -0.193 1.193 10 H -0.212 1.212 11 H -0.211 1.211 12 C -0.711 4.711 13 S 2.709 3.291 14 O -0.980 6.980 15 O -0.980 6.980 16 N -0.859 5.859 17 C 0.034 3.966 18 H 0.116 0.884 19 C -0.146 4.146 20 C -0.086 4.086 21 C -0.142 4.142 22 C -0.119 4.119 23 C -0.172 4.172 24 C 0.064 3.936 25 O -0.323 6.323 26 C -0.140 4.140 27 C -0.112 4.112 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.159 0.841 36 H 0.157 0.843 37 H 0.263 0.737 38 H 0.125 0.875 39 H 0.109 0.891 40 H 0.157 0.843 41 H 0.172 0.828 42 H 0.164 0.836 43 H 0.266 0.734 44 H 0.099 0.901 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.679 -13.437 -17.908 23.098 hybrid contribution 0.834 0.258 -1.737 1.944 sum 6.512 -13.179 -19.645 24.536 Atomic orbital electron populations 1.22389 0.98034 1.01130 1.01472 1.18083 0.91967 0.92116 0.92680 1.22431 1.00936 0.98336 1.01236 1.22101 1.30512 1.18227 0.91816 0.92271 1.26988 0.94679 0.96599 1.04160 1.70874 1.37485 1.15334 1.34798 0.82977 0.76365 0.74583 0.72438 1.19302 1.21250 1.21146 1.30425 1.12770 1.13260 1.14599 1.04766 0.74207 0.74185 0.75925 1.93524 1.31745 1.86767 1.86008 1.93526 1.78372 1.39876 1.86274 1.55356 1.60833 1.23629 1.46063 1.21521 0.97792 0.79700 0.97585 0.88358 1.21731 1.00989 0.92959 0.98898 1.20505 0.97807 0.95005 0.95238 1.20970 1.00894 0.91962 1.00410 1.21261 0.97890 1.00501 0.92278 1.21567 0.99564 0.95791 1.00258 1.18230 0.95753 0.92296 0.87337 1.84771 1.37743 1.84149 1.25644 1.20885 1.01069 0.96201 0.95799 1.21136 1.03053 0.92140 0.94899 0.92243 0.94272 0.92746 0.92756 0.94441 0.92393 0.90862 0.84063 0.84336 0.73666 0.87511 0.89139 0.84296 0.82847 0.83608 0.73432 0.90150 0.87873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -8.28 7.34 71.98 0.53 -7.75 16 2 C 0.05 2.51 0.52 -52.93 -0.03 2.48 16 3 C -0.17 -8.23 7.39 71.98 0.53 -7.70 16 4 C -0.59 -30.29 8.00 25.60 0.20 -30.09 16 5 H 0.06 2.93 7.76 -2.91 -0.02 2.91 16 6 C -0.03 -1.36 5.06 84.66 0.43 -0.93 16 7 N -0.94 -54.79 12.14 21.45 0.26 -54.53 16 8 Si 1.11 48.07 29.91 68.60 2.05 50.12 16 9 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 10 H -0.29 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.29 -12.18 7.11 99.48 0.71 -11.47 16 12 C -0.58 -20.58 5.00 71.98 0.36 -20.22 16 13 S 2.61 88.93 4.47 -56.49 -0.25 88.68 16 14 O -0.99 -39.56 15.24 -127.65 -1.95 -41.51 16 15 O -0.99 -38.94 15.88 -127.65 -2.03 -40.97 16 16 N -1.10 -25.62 5.44 -165.61 -0.90 -26.52 16 17 C 0.14 3.06 3.64 45.90 0.17 3.23 16 18 H 0.10 2.37 7.57 -2.39 -0.02 2.35 16 19 C -0.11 -2.00 6.49 30.52 0.20 -1.80 16 20 C -0.08 -1.61 6.14 -19.60 -0.12 -1.73 16 21 C -0.12 -2.02 10.04 22.32 0.22 -1.80 16 22 C -0.10 -1.41 10.04 22.22 0.22 -1.19 16 23 C -0.15 -2.33 9.98 22.34 0.22 -2.11 16 24 C 0.11 1.96 6.70 22.54 0.15 2.11 16 25 O -0.51 -8.23 13.45 -92.40 -1.24 -9.48 16 26 C -0.14 -2.70 6.11 -19.50 -0.12 -2.82 16 27 C -0.07 -1.39 6.43 30.51 0.20 -1.20 16 28 H 0.06 3.13 5.17 -2.38 -0.01 3.12 16 29 H 0.04 1.79 6.01 -2.39 -0.01 1.78 16 30 H 0.05 2.45 8.13 -2.39 -0.02 2.43 16 31 H 0.05 2.44 8.13 -2.39 -0.02 2.42 16 32 H 0.04 1.71 6.03 -2.39 -0.01 1.69 16 33 H 0.06 3.05 5.30 -2.39 -0.01 3.04 16 34 H 0.28 15.93 3.62 -92.71 -0.34 15.59 16 35 H 0.14 4.42 8.14 -2.39 -0.02 4.40 16 36 H 0.14 4.35 7.99 -2.39 -0.02 4.33 16 37 H 0.43 7.78 8.66 -96.75 -0.84 6.94 16 38 H 0.11 1.71 8.08 -2.39 -0.02 1.69 16 39 H 0.09 1.66 7.99 -2.39 -0.02 1.64 16 40 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 41 H 0.15 1.29 8.06 -2.91 -0.02 1.27 16 42 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 43 H 0.41 2.63 9.06 -74.06 -0.67 1.96 16 44 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.10 1.55 7.89 -2.39 -0.02 1.53 16 Total: -1.00 -73.51 364.59 -0.93 -74.44 By element: Atomic # 1 Polarization: 31.32 SS G_CDS: -0.04 Total: 31.28 kcal Atomic # 6 Polarization: -74.68 SS G_CDS: 3.17 Total: -71.51 kcal Atomic # 7 Polarization: -80.41 SS G_CDS: -0.64 Total: -81.05 kcal Atomic # 8 Polarization: -86.74 SS G_CDS: -5.22 Total: -91.95 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 2.05 Total: 50.12 kcal Atomic # 16 Polarization: 88.93 SS G_CDS: -0.25 Total: 88.68 kcal Total: -73.51 -0.93 -74.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451456724.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.394 kcal (2) G-P(sol) polarization free energy of solvation -73.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds