Wall clock time and date at job start Tue Mar 31 2020 22:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 109.47230 * 2 1 4 4 C 1.50697 * 109.47630 * 239.99514 * 2 1 3 5 5 H 1.07997 * 120.00322 * 240.00162 * 4 2 1 6 6 C 1.37880 * 119.99943 * 59.99850 * 4 2 1 7 7 N 1.31518 * 119.99809 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00266 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47023 * 359.97438 * 8 6 4 10 10 H 1.48502 * 109.47077 * 120.00165 * 8 6 4 11 11 H 1.48500 * 109.47130 * 240.00059 * 8 6 4 12 12 C 1.53009 * 109.47064 * 119.99452 * 2 1 3 13 13 S 1.81397 * 109.47235 * 300.00294 * 12 2 1 14 14 O 1.42105 * 110.54275 * 68.37271 * 13 12 2 15 15 O 1.42101 * 110.54298 * 291.62373 * 13 12 2 16 16 N 1.65599 * 104.44825 * 179.97438 * 13 12 2 17 17 C 1.46497 * 120.00110 * 65.00280 * 16 13 12 18 18 H 1.09007 * 110.73167 * 333.04321 * 17 16 13 19 19 C 1.54347 * 110.82742 * 96.44662 * 17 16 13 20 20 C 1.51387 * 105.17022 * 144.55493 * 19 17 16 21 21 C 1.38533 * 130.35897 * 162.84169 * 20 19 17 22 22 C 1.38130 * 120.33352 * 179.97438 * 21 20 19 23 23 C 1.38160 * 119.99701 * 0.02562 * 22 21 20 24 24 C 1.38603 * 119.86975 * 359.97438 * 23 22 21 25 25 O 1.35905 * 119.94719 * 180.02562 * 24 23 22 26 26 C 1.38124 * 109.75456 * 342.82259 * 20 19 17 27 27 C 1.51362 * 109.79060 * 359.97438 * 26 20 19 28 28 H 1.08998 * 109.47786 * 300.00327 * 1 2 3 29 29 H 1.09005 * 109.47213 * 60.00504 * 1 2 3 30 30 H 1.09009 * 109.46944 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47448 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.46897 * 299.99411 * 3 2 1 33 33 H 1.09001 * 109.47695 * 59.99437 * 3 2 1 34 34 H 0.97001 * 119.99986 * 179.97438 * 7 6 4 35 35 H 1.09004 * 109.47149 * 180.02562 * 12 2 1 36 36 H 1.09000 * 109.46805 * 60.00171 * 12 2 1 37 37 H 0.96999 * 120.00046 * 244.99555 * 16 13 12 38 38 H 1.08998 * 110.30968 * 263.48379 * 19 17 16 39 39 H 1.09006 * 110.29954 * 25.63932 * 19 17 16 40 40 H 1.08004 * 119.83734 * 359.97438 * 21 20 19 41 41 H 1.08001 * 120.00233 * 179.97438 * 22 21 20 42 42 H 1.08004 * 120.06732 * 180.02562 * 23 22 21 43 43 H 0.96696 * 113.99724 * 269.97110 * 25 24 23 44 44 H 1.09000 * 110.30557 * 258.26277 * 27 26 20 45 45 H 1.08995 * 110.30227 * 136.10668 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3215 -1.1206 -4.0078 9 1 3.1466 -2.2871 -3.6036 10 1 1.1662 -1.5870 -4.8160 11 1 3.1467 -0.1876 -4.8164 12 6 2.0399 -0.7212 1.2494 13 16 1.4352 0.1340 2.7304 14 8 0.0278 -0.0182 2.8544 15 8 2.0478 1.4102 2.8544 16 7 2.0529 -0.7406 3.9937 17 6 3.5012 -0.7979 4.2061 18 1 4.0350 -0.6529 3.2668 19 6 3.9437 0.2444 5.2550 20 6 5.0737 -0.4150 6.0166 21 6 6.0439 0.1362 6.8376 22 6 6.9904 -0.6710 7.4381 23 6 6.9729 -2.0353 7.2208 24 6 6.0041 -2.5912 6.4002 25 8 5.9851 -3.9331 6.1857 26 6 5.0517 -1.7785 5.7966 27 6 3.9055 -2.1301 4.8727 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0278 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 0.7095 1.1616 -3.4845 35 1 3.1300 -0.7208 1.2496 36 1 1.6766 -1.7488 1.2494 37 1 1.4557 -1.2149 4.5931 38 1 4.2975 1.1501 4.7625 39 1 3.1187 0.4768 5.9286 40 1 6.0604 1.2024 7.0090 41 1 7.7446 -0.2355 8.0768 42 1 7.7122 -2.6675 7.6901 43 1 6.5107 -4.2173 5.4255 44 1 3.0707 -2.5367 5.4435 45 1 4.2334 -2.8456 4.1187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451456730.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:20 Heat of formation + Delta-G solvation = -116.737670 kcal Electronic energy + Delta-G solvation = -27867.803872 eV Core-core repulsion = 23976.292081 eV Total energy + Delta-G solvation = -3891.511791 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.38228 -38.63252 -38.11388 -38.03785 -37.03769 -36.84215 -33.81102 -33.61235 -31.25810 -28.83816 -28.29559 -28.14402 -27.67471 -27.23819 -23.40665 -22.13053 -22.00343 -21.39565 -20.28729 -18.86892 -18.85378 -17.87842 -17.55160 -16.96286 -16.84093 -16.78440 -16.54268 -16.20759 -15.82431 -15.10093 -14.87273 -14.71845 -14.63923 -14.41436 -13.94233 -13.86209 -13.79006 -13.55366 -13.30331 -13.04919 -13.00252 -12.90295 -12.85766 -12.74343 -12.51668 -12.49317 -12.20632 -12.17560 -12.10674 -11.99982 -11.91579 -11.54917 -11.44955 -11.35365 -10.68468 -10.41430 -10.36826 -9.52469 -9.47368 -8.02389 -6.20850 -0.60791 0.31816 0.35520 1.43480 1.46817 1.56008 1.86606 2.44792 2.67499 2.84602 3.20150 3.32393 3.34411 3.36282 3.54640 3.96770 3.97143 4.05060 4.07532 4.19680 4.25506 4.41755 4.50693 4.59820 4.61958 4.73831 4.84963 4.87285 4.88518 4.91043 5.00317 5.05634 5.10340 5.17055 5.22776 5.40681 5.45089 5.51014 5.52404 5.62159 5.66087 5.93247 5.99164 6.09471 6.13375 6.35335 6.84574 6.88520 7.47663 8.97560 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016002 B = 0.003011 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.307196 B = 9296.735252 C =10103.081698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.070 3.930 3 C -0.160 4.160 4 C -0.516 4.516 5 H 0.064 0.936 6 C 0.017 3.983 7 N -0.908 5.908 8 Si 0.954 3.046 9 H -0.264 1.264 10 H -0.285 1.285 11 H -0.284 1.284 12 C -0.587 4.587 13 S 2.613 3.387 14 O -0.993 6.993 15 O -0.984 6.984 16 N -1.103 6.103 17 C 0.146 3.854 18 H 0.106 0.894 19 C -0.102 4.102 20 C -0.088 4.088 21 C -0.126 4.126 22 C -0.101 4.101 23 C -0.154 4.154 24 C 0.110 3.890 25 O -0.509 6.509 26 C -0.137 4.137 27 C -0.074 4.074 28 H 0.032 0.968 29 H 0.070 0.930 30 H 0.040 0.960 31 H 0.041 0.959 32 H 0.069 0.931 33 H 0.034 0.966 34 H 0.261 0.739 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.425 0.575 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.137 0.863 41 H 0.154 0.846 42 H 0.147 0.853 43 H 0.407 0.593 44 H 0.096 0.904 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.317 -6.709 18.641 23.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.068 3.932 3 C -0.218 4.218 4 C -0.555 4.555 5 H 0.083 0.917 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.780 3.220 9 H -0.188 1.188 10 H -0.211 1.211 11 H -0.210 1.210 12 C -0.720 4.720 13 S 2.710 3.290 14 O -0.983 6.983 15 O -0.974 6.974 16 N -0.862 5.862 17 C 0.038 3.962 18 H 0.124 0.876 19 C -0.141 4.141 20 C -0.088 4.088 21 C -0.144 4.144 22 C -0.119 4.119 23 C -0.172 4.172 24 C 0.065 3.935 25 O -0.322 6.322 26 C -0.138 4.138 27 C -0.112 4.112 28 H 0.051 0.949 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.088 0.912 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.156 0.844 36 H 0.157 0.843 37 H 0.261 0.739 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.155 0.845 41 H 0.172 0.828 42 H 0.164 0.836 43 H 0.266 0.734 44 H 0.114 0.886 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.425 -5.735 18.976 22.880 hybrid contribution 0.378 -0.848 -1.501 1.765 sum 11.803 -6.583 17.475 22.091 Atomic orbital electron populations 1.22225 0.97912 1.00497 1.01325 1.17909 0.92215 0.92198 0.90904 1.22204 0.99876 0.98313 1.01370 1.21347 1.31518 1.12264 0.90382 0.91739 1.25679 0.95218 0.95659 1.01689 1.69955 1.37282 1.23728 1.23734 0.85572 0.78006 0.78768 0.79670 1.18834 1.21120 1.21019 1.30474 1.12641 1.13508 1.15366 1.04773 0.73471 0.74970 0.75746 1.93515 1.31487 1.87070 1.86241 1.93518 1.78287 1.39728 1.85854 1.55463 1.14097 1.70476 1.46157 1.21523 0.79295 0.95799 0.99539 0.87602 1.21610 0.96286 0.99030 0.97199 1.20550 0.96457 0.94087 0.97730 1.20961 0.94738 1.01255 0.97485 1.21248 0.98696 0.92820 0.99150 1.21576 0.99074 0.96090 1.00467 1.18206 0.94703 0.82855 0.97710 1.84765 1.74598 1.18394 1.54442 1.20906 0.98372 0.94184 1.00368 1.21193 0.95975 0.96520 0.97533 0.94898 0.91119 0.94110 0.93984 0.91227 0.94737 0.92989 0.84387 0.84313 0.73887 0.89823 0.89210 0.84530 0.82828 0.83562 0.73397 0.88598 0.88438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.94 7.77 71.98 0.56 -7.38 16 2 C 0.07 3.28 0.52 -52.93 -0.03 3.25 16 3 C -0.16 -7.75 7.77 71.98 0.56 -7.19 16 4 C -0.52 -26.30 8.01 25.60 0.21 -26.10 16 5 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 6 C 0.02 0.88 5.15 84.65 0.44 1.32 16 7 N -0.91 -49.87 9.35 21.45 0.20 -49.67 16 8 Si 0.95 41.57 29.54 68.60 2.03 43.60 16 9 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 10 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 12 C -0.59 -21.06 4.91 71.99 0.35 -20.70 16 13 S 2.61 89.62 4.44 -56.49 -0.25 89.37 16 14 O -0.99 -39.90 15.70 -127.65 -2.00 -41.91 16 15 O -0.98 -38.59 15.44 -127.65 -1.97 -40.56 16 16 N -1.10 -26.28 5.47 -165.57 -0.91 -27.19 16 17 C 0.15 3.11 3.50 45.91 0.16 3.27 16 18 H 0.11 2.16 7.26 -2.38 -0.02 2.14 16 19 C -0.10 -2.24 6.49 30.52 0.20 -2.04 16 20 C -0.09 -1.77 6.14 -19.60 -0.12 -1.89 16 21 C -0.13 -2.17 10.04 22.31 0.22 -1.94 16 22 C -0.10 -1.45 10.04 22.23 0.22 -1.22 16 23 C -0.15 -2.35 9.98 22.34 0.22 -2.13 16 24 C 0.11 1.98 6.70 22.54 0.15 2.13 16 25 O -0.51 -8.04 13.45 -92.49 -1.24 -9.28 16 26 C -0.14 -2.68 6.11 -19.50 -0.12 -2.80 16 27 C -0.07 -1.31 6.43 30.52 0.20 -1.12 16 28 H 0.03 1.54 5.46 -2.39 -0.01 1.52 16 29 H 0.07 3.81 6.07 -2.38 -0.01 3.79 16 30 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 31 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 32 H 0.07 3.72 6.07 -2.39 -0.01 3.71 16 33 H 0.03 1.59 5.46 -2.39 -0.01 1.58 16 34 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 35 H 0.14 4.28 7.47 -2.39 -0.02 4.26 16 36 H 0.14 4.41 8.14 -2.39 -0.02 4.39 16 37 H 0.42 8.31 8.58 -96.75 -0.83 7.48 16 38 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.09 1.94 8.08 -2.38 -0.02 1.92 16 40 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 41 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 42 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 43 H 0.41 2.81 9.06 -74.06 -0.67 2.13 16 44 H 0.10 1.59 7.84 -2.39 -0.02 1.57 16 45 H 0.10 1.46 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -69.94 366.57 -1.39 -71.34 By element: Atomic # 1 Polarization: 29.32 SS G_CDS: -0.47 Total: 28.85 kcal Atomic # 6 Polarization: -67.76 SS G_CDS: 3.22 Total: -64.54 kcal Atomic # 7 Polarization: -76.16 SS G_CDS: -0.71 Total: -76.86 kcal Atomic # 8 Polarization: -86.53 SS G_CDS: -5.22 Total: -91.75 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Atomic # 16 Polarization: 89.62 SS G_CDS: -0.25 Total: 89.37 kcal Total: -69.94 -1.39 -71.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451456730.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.402 kcal (2) G-P(sol) polarization free energy of solvation -69.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds