Wall clock time and date at job start Tue Mar 31 2020 23:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 110.66800 * 2 1 4 4 O 1.43771 * 110.74764 * 123.21491 * 2 1 3 5 5 C 1.36381 * 109.09756 * 90.92171 * 4 2 1 6 6 C 1.39287 * 129.79451 * 198.29624 * 5 4 2 7 7 C 1.37939 * 120.23771 * 180.80972 * 6 5 4 8 8 C 1.38287 * 120.34990 * 0.02562 * 7 6 5 9 9 C 1.38350 * 119.76884 * 359.79279 * 8 7 6 10 10 C 1.37738 * 119.98023 * 0.03121 * 9 8 7 11 11 C 1.51648 * 132.18337 * 180.35550 * 10 9 8 12 12 H 1.09006 * 110.96322 * 46.43012 * 11 10 9 13 13 N 1.46500 * 110.94051 * 282.76047 * 11 10 9 14 14 S 1.65599 * 120.00080 * 102.45314 * 13 11 10 15 15 O 1.42099 * 104.27463 * 181.07293 * 14 13 11 16 16 O 1.42101 * 104.27877 * 308.92846 * 14 13 11 17 17 C 1.81401 * 104.44835 * 65.00009 * 14 13 11 18 18 C 1.52995 * 109.47091 * 179.97438 * 17 14 13 19 19 C 1.53007 * 109.47350 * 300.00412 * 18 17 14 20 20 C 1.52999 * 109.47138 * 60.00173 * 18 17 14 21 21 C 1.50702 * 109.47172 * 180.02562 * 18 17 14 22 22 H 1.07998 * 120.00050 * 0.83920 * 21 18 17 23 23 C 1.37874 * 120.00091 * 180.83383 * 21 18 17 24 24 N 1.31516 * 120.00402 * 194.57819 * 23 21 18 25 25 Si 1.86806 * 119.99981 * 14.58214 * 23 21 18 26 26 H 1.48500 * 109.47185 * 84.44814 * 25 23 21 27 27 H 1.48498 * 109.46999 * 204.45018 * 25 23 21 28 28 H 1.48500 * 109.46988 * 324.45037 * 25 23 21 29 29 H 1.09003 * 109.47580 * 180.70186 * 1 2 3 30 30 H 1.09003 * 109.46961 * 300.70122 * 1 2 3 31 31 H 1.08994 * 109.47435 * 60.70515 * 1 2 3 32 32 H 1.08000 * 119.88165 * 0.78688 * 6 5 4 33 33 H 1.08003 * 119.82226 * 180.02562 * 7 6 5 34 34 H 1.07992 * 120.11156 * 179.81190 * 8 7 6 35 35 H 1.07995 * 120.00480 * 180.02562 * 9 8 7 36 36 H 0.97001 * 119.99838 * 282.45888 * 13 11 10 37 37 H 1.08997 * 109.47155 * 299.99805 * 17 14 13 38 38 H 1.09003 * 109.46876 * 59.99848 * 17 14 13 39 39 H 1.08994 * 109.47285 * 70.22758 * 19 18 17 40 40 H 1.08994 * 109.47116 * 190.23541 * 19 18 17 41 41 H 1.09006 * 109.46950 * 310.23361 * 19 18 17 42 42 H 1.08997 * 109.47232 * 59.99915 * 20 18 17 43 43 H 1.09001 * 109.47366 * 180.02562 * 20 18 17 44 44 H 1.09001 * 109.47263 * 299.99799 * 20 18 17 45 45 H 0.96996 * 120.00296 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9146 1.0198 0.0000 4 8 2.0392 -0.7365 1.1248 5 6 2.2167 -2.0391 0.7619 6 6 2.3537 -3.1751 1.5562 7 6 2.5429 -4.4111 0.9738 8 6 2.5988 -4.5340 -0.4024 9 6 2.4598 -3.4110 -1.1985 10 6 2.2672 -2.1763 -0.6193 11 6 2.0783 -0.7925 -1.2103 12 1 1.3532 -0.8117 -2.0240 13 7 3.3561 -0.2380 -1.6640 14 16 3.7314 -0.2348 -3.2769 15 8 5.0283 0.3430 -3.3337 16 8 3.5078 -1.5755 -3.6914 17 6 2.5067 0.8752 -4.0243 18 6 2.7512 0.9632 -5.5320 19 6 4.1577 1.5079 -5.7897 20 6 2.6224 -0.4297 -6.1518 21 6 1.7342 1.8859 -6.1529 22 1 0.9965 2.3725 -5.5321 23 6 1.7455 2.1089 -7.5134 24 7 1.0647 3.1131 -8.0210 25 14 2.7280 0.9845 -8.6360 26 1 1.9161 -0.2129 -8.9710 27 1 3.0759 1.7115 -9.8833 28 1 3.9730 0.5612 -7.9461 29 1 -0.3634 -1.0276 0.0126 30 1 -0.3633 0.5247 0.8837 31 1 -0.3634 0.5028 -0.8962 32 1 2.3120 -3.0878 2.6318 33 1 2.6479 -5.2876 1.5961 34 1 2.7501 -5.5031 -0.8542 35 1 2.5024 -3.5026 -2.2737 36 1 3.9824 0.1272 -1.0196 37 1 1.5048 0.4874 -3.8404 38 1 2.5988 1.8677 -3.5831 39 1 4.8955 0.7583 -5.5041 40 1 4.2683 1.7419 -6.8485 41 1 4.3110 2.4117 -5.1999 42 1 1.6205 -0.8177 -5.9682 43 1 2.7970 -0.3671 -7.2259 44 1 3.3582 -1.0967 -5.7027 45 1 1.0724 3.2698 -8.9781 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451555909.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:00 Heat of formation + Delta-G solvation = -57.947194 kcal Electronic energy + Delta-G solvation = -28758.123633 eV Core-core repulsion = 24869.161188 eV Total energy + Delta-G solvation = -3888.962445 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.51711 -37.67181 -36.80081 -36.77525 -35.58900 -35.24770 -32.00643 -31.72437 -30.86285 -29.96578 -27.52159 -26.43262 -26.12248 -25.05980 -22.89324 -21.92485 -21.76583 -20.03241 -18.90933 -17.80488 -17.51174 -16.95129 -16.22892 -16.11729 -15.94419 -15.73474 -15.47279 -15.12001 -14.79091 -14.06597 -13.73599 -13.65316 -13.49567 -13.22369 -12.98431 -12.96085 -12.75083 -12.57562 -12.48411 -12.25588 -12.10867 -11.87216 -11.67401 -11.60615 -11.39106 -11.16505 -11.15548 -11.09617 -11.03787 -10.82041 -10.22459 -10.11327 -10.09109 -9.61338 -9.11921 -9.04063 -8.79532 -8.52218 -8.36010 -6.23959 -4.21759 0.55899 1.13032 1.26880 2.90372 3.01132 3.21793 3.30983 3.35767 3.62908 3.95862 4.19406 4.27378 4.29955 4.51669 4.57619 4.68782 4.87882 4.92884 4.93776 5.05387 5.10045 5.24648 5.27982 5.41487 5.46582 5.48342 5.61199 5.66299 5.86302 5.91119 5.92789 6.13534 6.17307 6.25936 6.31599 6.37906 6.39095 6.43845 6.47590 6.64446 6.80831 6.87534 7.02511 7.07699 7.25741 7.57327 8.33357 8.78218 9.39920 10.88469 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019334 B = 0.003603 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.860577 B = 7768.939126 C = 8189.764884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.070 3.930 3 H 0.126 0.874 4 O -0.297 6.297 5 C 0.113 3.887 6 C -0.148 4.148 7 C -0.081 4.081 8 C -0.155 4.155 9 C -0.047 4.047 10 C -0.187 4.187 11 C 0.169 3.831 12 H 0.115 0.885 13 N -1.114 6.114 14 S 2.587 3.413 15 O -0.960 6.960 16 O -0.958 6.958 17 C -0.575 4.575 18 C 0.055 3.945 19 C -0.171 4.171 20 C -0.182 4.182 21 C -0.509 4.509 22 H 0.078 0.922 23 C 0.078 3.922 24 N -0.888 5.888 25 Si 0.873 3.127 26 H -0.280 1.280 27 H -0.300 1.300 28 H -0.246 1.246 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.140 0.860 36 H 0.416 0.584 37 H 0.123 0.877 38 H 0.129 0.871 39 H 0.036 0.964 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.052 0.948 44 H 0.050 0.950 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.136 -10.517 18.005 20.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.012 3.988 3 H 0.144 0.856 4 O -0.212 6.212 5 C 0.067 3.933 6 C -0.167 4.167 7 C -0.099 4.099 8 C -0.173 4.173 9 C -0.066 4.066 10 C -0.190 4.190 11 C 0.061 3.939 12 H 0.133 0.867 13 N -0.868 5.868 14 S 2.685 3.315 15 O -0.950 6.950 16 O -0.948 6.948 17 C -0.708 4.708 18 C 0.052 3.948 19 C -0.228 4.228 20 C -0.238 4.238 21 C -0.548 4.548 22 H 0.096 0.904 23 C -0.126 4.126 24 N -0.524 5.524 25 Si 0.705 3.295 26 H -0.208 1.208 27 H -0.229 1.229 28 H -0.172 1.172 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.157 0.843 36 H 0.249 0.751 37 H 0.142 0.858 38 H 0.147 0.853 39 H 0.055 0.945 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.724 -10.846 17.539 20.635 hybrid contribution 0.084 0.076 -0.525 0.537 sum 0.808 -10.770 17.014 20.152 Atomic orbital electron populations 1.22235 0.93002 1.03731 1.04020 1.23753 0.95343 0.96751 0.82931 0.85625 1.86972 1.80035 1.16711 1.37433 1.19639 0.95880 0.85053 0.92740 1.20222 1.07308 0.89546 0.99576 1.20905 0.97602 0.96328 0.95083 1.21105 1.03954 0.98711 0.93553 1.20666 0.94270 0.90277 1.01343 1.20974 1.08585 0.95582 0.93845 1.20791 0.85909 0.89015 0.98214 0.86728 1.55929 1.27072 1.76467 1.27357 1.05844 0.76613 0.76599 0.72475 1.93581 1.36640 1.79999 1.84780 1.93537 1.86628 1.34276 1.80360 1.30405 1.15693 1.15041 1.09689 1.18228 0.95696 0.94410 0.86423 1.22686 0.96018 1.00800 1.03338 1.22820 1.02133 0.97566 1.01328 1.20630 1.14991 1.26248 0.92907 0.90373 1.24960 0.94986 0.94472 0.98133 1.69929 1.42371 1.27016 1.13084 0.87448 0.82007 0.80568 0.79488 1.20771 1.22870 1.17204 0.91464 0.90715 0.89790 0.85626 0.85297 0.85408 0.84263 0.75058 0.85830 0.85279 0.94477 0.91386 0.92316 0.91778 0.92977 0.93139 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 9.50 37.15 0.35 -1.05 16 2 C 0.07 0.69 3.98 -25.83 -0.10 0.58 16 3 H 0.13 1.02 8.10 -51.93 -0.42 0.60 16 4 O -0.30 -3.47 10.84 -20.96 -0.23 -3.70 16 5 C 0.11 1.36 6.94 -38.95 -0.27 1.09 16 6 C -0.15 -1.54 10.06 -39.30 -0.40 -1.94 16 7 C -0.08 -0.76 10.02 -39.67 -0.40 -1.16 16 8 C -0.16 -1.62 10.07 -39.52 -0.40 -2.02 16 9 C -0.05 -0.59 10.03 -39.72 -0.40 -0.99 16 10 C -0.19 -2.37 5.93 -104.10 -0.62 -2.98 16 11 C 0.17 1.97 3.10 -67.71 -0.21 1.76 16 12 H 0.11 1.21 7.11 -51.93 -0.37 0.84 16 13 N -1.11 -14.12 5.44 -4.70 -0.03 -14.14 16 14 S 2.59 42.60 4.42 -107.50 -0.48 42.12 16 15 O -0.96 -18.39 15.92 -57.54 -0.92 -19.30 16 16 O -0.96 -17.41 14.92 -57.54 -0.86 -18.26 16 17 C -0.58 -9.88 4.91 37.15 0.18 -9.70 16 18 C 0.06 1.22 0.52 -155.66 -0.08 1.14 16 19 C -0.17 -3.77 6.95 37.16 0.26 -3.51 16 20 C -0.18 -3.92 7.22 37.16 0.27 -3.65 16 21 C -0.51 -13.27 8.62 -34.44 -0.30 -13.57 16 22 H 0.08 2.15 7.99 -52.49 -0.42 1.73 16 23 C 0.08 2.14 5.31 -17.82 -0.09 2.05 16 24 N -0.89 -25.94 13.96 55.43 0.77 -25.16 16 25 Si 0.87 21.13 22.79 -169.99 -3.87 17.25 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 28 H -0.25 -5.58 4.67 56.52 0.26 -5.32 16 29 H 0.07 0.58 8.11 -51.93 -0.42 0.15 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 33 H 0.13 0.84 8.06 -52.48 -0.42 0.41 16 34 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.14 1.85 7.53 -52.49 -0.40 1.46 16 36 H 0.42 4.67 8.85 -34.47 -0.31 4.36 16 37 H 0.12 1.84 7.55 -51.93 -0.39 1.45 16 38 H 0.13 2.01 8.14 -51.92 -0.42 1.58 16 39 H 0.04 0.77 6.21 -51.93 -0.32 0.45 16 40 H 0.07 1.55 4.32 -51.93 -0.22 1.33 16 41 H 0.06 1.22 8.11 -51.93 -0.42 0.80 16 42 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.05 1.17 2.28 -51.93 -0.12 1.06 16 44 H 0.05 1.02 5.47 -51.93 -0.28 0.73 16 45 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 356.98 15.07 5.38 5.38 Total: -1.00 -33.15 356.98 -8.75 -41.90 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -6.32 Total: 7.88 kcal Atomic # 6 Polarization: -31.76 SS G_CDS: -2.20 Total: -33.96 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.75 Total: -39.31 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -2.00 Total: -41.27 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -3.87 Total: 17.25 kcal Atomic # 16 Polarization: 42.60 SS G_CDS: -0.48 Total: 42.12 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.15 -8.75 -41.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451555909.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.048 kcal (2) G-P(sol) polarization free energy of solvation -33.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds