Wall clock time and date at job start Tue Mar 31 2020 23:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 110.66800 * 2 1 4 4 O 1.43771 * 110.74764 * 123.21491 * 2 1 3 5 5 C 1.36381 * 109.09756 * 90.92171 * 4 2 1 6 6 C 1.39287 * 129.79451 * 198.29624 * 5 4 2 7 7 C 1.37939 * 120.23771 * 180.80972 * 6 5 4 8 8 C 1.38287 * 120.34990 * 0.02562 * 7 6 5 9 9 C 1.38350 * 119.76884 * 359.79279 * 8 7 6 10 10 C 1.37738 * 119.98023 * 0.03121 * 9 8 7 11 11 C 1.51648 * 132.18337 * 180.35550 * 10 9 8 12 12 H 1.09006 * 110.96322 * 46.43012 * 11 10 9 13 13 N 1.46500 * 110.94051 * 282.76047 * 11 10 9 14 14 S 1.65599 * 120.00080 * 102.45314 * 13 11 10 15 15 O 1.42099 * 104.27463 * 181.07293 * 14 13 11 16 16 O 1.42101 * 104.27877 * 308.92846 * 14 13 11 17 17 C 1.81401 * 104.44835 * 65.00009 * 14 13 11 18 18 C 1.52995 * 109.47091 * 179.97438 * 17 14 13 19 19 C 1.53007 * 109.47350 * 300.00412 * 18 17 14 20 20 C 1.52999 * 109.47138 * 60.00173 * 18 17 14 21 21 C 1.50702 * 109.47172 * 180.02562 * 18 17 14 22 22 H 1.07998 * 120.00050 * 0.83920 * 21 18 17 23 23 C 1.37874 * 120.00091 * 180.83383 * 21 18 17 24 24 N 1.31516 * 120.00402 * 194.57819 * 23 21 18 25 25 Si 1.86806 * 119.99981 * 14.58214 * 23 21 18 26 26 H 1.48500 * 109.47185 * 84.44814 * 25 23 21 27 27 H 1.48498 * 109.46999 * 204.45018 * 25 23 21 28 28 H 1.48500 * 109.46988 * 324.45037 * 25 23 21 29 29 H 1.09003 * 109.47580 * 180.70186 * 1 2 3 30 30 H 1.09003 * 109.46961 * 300.70122 * 1 2 3 31 31 H 1.08994 * 109.47435 * 60.70515 * 1 2 3 32 32 H 1.08000 * 119.88165 * 0.78688 * 6 5 4 33 33 H 1.08003 * 119.82226 * 180.02562 * 7 6 5 34 34 H 1.07992 * 120.11156 * 179.81190 * 8 7 6 35 35 H 1.07995 * 120.00480 * 180.02562 * 9 8 7 36 36 H 0.97001 * 119.99838 * 282.45888 * 13 11 10 37 37 H 1.08997 * 109.47155 * 299.99805 * 17 14 13 38 38 H 1.09003 * 109.46876 * 59.99848 * 17 14 13 39 39 H 1.08994 * 109.47285 * 70.22758 * 19 18 17 40 40 H 1.08994 * 109.47116 * 190.23541 * 19 18 17 41 41 H 1.09006 * 109.46950 * 310.23361 * 19 18 17 42 42 H 1.08997 * 109.47232 * 59.99915 * 20 18 17 43 43 H 1.09001 * 109.47366 * 180.02562 * 20 18 17 44 44 H 1.09001 * 109.47263 * 299.99799 * 20 18 17 45 45 H 0.96996 * 120.00296 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9146 1.0198 0.0000 4 8 2.0392 -0.7365 1.1248 5 6 2.2167 -2.0391 0.7619 6 6 2.3537 -3.1751 1.5562 7 6 2.5429 -4.4111 0.9738 8 6 2.5988 -4.5340 -0.4024 9 6 2.4598 -3.4110 -1.1985 10 6 2.2672 -2.1763 -0.6193 11 6 2.0783 -0.7925 -1.2103 12 1 1.3532 -0.8117 -2.0240 13 7 3.3561 -0.2380 -1.6640 14 16 3.7314 -0.2348 -3.2769 15 8 5.0283 0.3430 -3.3337 16 8 3.5078 -1.5755 -3.6914 17 6 2.5067 0.8752 -4.0243 18 6 2.7512 0.9632 -5.5320 19 6 4.1577 1.5079 -5.7897 20 6 2.6224 -0.4297 -6.1518 21 6 1.7342 1.8859 -6.1529 22 1 0.9965 2.3725 -5.5321 23 6 1.7455 2.1089 -7.5134 24 7 1.0647 3.1131 -8.0210 25 14 2.7280 0.9845 -8.6360 26 1 1.9161 -0.2129 -8.9710 27 1 3.0759 1.7115 -9.8833 28 1 3.9730 0.5612 -7.9461 29 1 -0.3634 -1.0276 0.0126 30 1 -0.3633 0.5247 0.8837 31 1 -0.3634 0.5028 -0.8962 32 1 2.3120 -3.0878 2.6318 33 1 2.6479 -5.2876 1.5961 34 1 2.7501 -5.5031 -0.8542 35 1 2.5024 -3.5026 -2.2737 36 1 3.9824 0.1272 -1.0196 37 1 1.5048 0.4874 -3.8404 38 1 2.5988 1.8677 -3.5831 39 1 4.8955 0.7583 -5.5041 40 1 4.2683 1.7419 -6.8485 41 1 4.3110 2.4117 -5.1999 42 1 1.6205 -0.8177 -5.9682 43 1 2.7970 -0.3671 -7.2259 44 1 3.3582 -1.0967 -5.7027 45 1 1.0724 3.2698 -8.9781 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451555909.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:59 Heat of formation + Delta-G solvation = -81.820117 kcal Electronic energy + Delta-G solvation = -28759.158840 eV Core-core repulsion = 24869.161188 eV Total energy + Delta-G solvation = -3889.997652 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.33384 -38.51497 -38.45814 -38.17779 -36.97889 -36.23952 -34.04508 -32.54035 -31.65356 -30.78810 -29.02402 -28.15746 -27.13299 -26.88116 -23.68484 -22.73500 -22.60827 -21.68221 -20.27301 -18.95258 -18.60870 -18.12024 -17.73597 -17.31008 -17.11659 -16.90441 -16.59579 -16.44534 -15.94612 -15.12495 -14.99931 -14.87245 -14.77149 -14.52683 -14.46663 -14.20205 -14.16456 -13.70474 -13.55574 -13.38776 -13.21223 -13.07745 -12.92691 -12.79902 -12.74007 -12.67936 -12.59060 -12.25656 -12.00560 -11.96407 -11.91899 -11.85860 -11.75380 -10.98603 -10.69054 -10.64689 -10.42409 -9.90143 -9.18235 -8.34828 -6.34004 -0.75205 0.29796 0.43540 1.29873 1.35566 1.42750 1.74156 2.23673 2.29477 2.71886 2.79378 2.99753 3.23089 3.34569 3.42834 3.68310 3.75334 3.92949 4.05013 4.08462 4.23545 4.23975 4.24563 4.37322 4.49516 4.51518 4.58852 4.64834 4.68648 4.72562 4.81391 4.82804 4.92465 4.94753 5.11556 5.14401 5.23731 5.37367 5.38821 5.49749 5.51781 5.58617 5.62678 5.68227 5.90943 6.21975 6.26188 6.69353 7.30571 8.80785 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.019334 B = 0.003603 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.860577 B = 7768.939126 C = 8189.764884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.071 3.929 3 H 0.143 0.857 4 O -0.307 6.307 5 C 0.098 3.902 6 C -0.153 4.153 7 C -0.075 4.075 8 C -0.159 4.159 9 C -0.071 4.071 10 C -0.206 4.206 11 C 0.158 3.842 12 H 0.123 0.877 13 N -1.100 6.100 14 S 2.610 3.390 15 O -0.986 6.986 16 O -0.975 6.975 17 C -0.582 4.582 18 C 0.046 3.954 19 C -0.176 4.176 20 C -0.187 4.187 21 C -0.501 4.501 22 H 0.054 0.946 23 C 0.027 3.973 24 N -0.935 5.935 25 Si 0.914 3.086 26 H -0.275 1.275 27 H -0.307 1.307 28 H -0.223 1.223 29 H 0.060 0.940 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.144 0.856 33 H 0.162 0.838 34 H 0.147 0.853 35 H 0.125 0.875 36 H 0.424 0.576 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.048 0.952 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.042 0.958 44 H 0.064 0.936 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.557 -12.107 20.048 23.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.013 3.987 3 H 0.161 0.839 4 O -0.221 6.221 5 C 0.052 3.948 6 C -0.172 4.172 7 C -0.093 4.093 8 C -0.177 4.177 9 C -0.089 4.089 10 C -0.208 4.208 11 C 0.051 3.949 12 H 0.141 0.859 13 N -0.858 5.858 14 S 2.707 3.293 15 O -0.977 6.977 16 O -0.964 6.964 17 C -0.714 4.714 18 C 0.043 3.957 19 C -0.234 4.234 20 C -0.244 4.244 21 C -0.540 4.540 22 H 0.072 0.928 23 C -0.171 4.171 24 N -0.574 5.574 25 Si 0.744 3.256 26 H -0.202 1.202 27 H -0.236 1.236 28 H -0.148 1.148 29 H 0.079 0.921 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.162 0.838 33 H 0.180 0.820 34 H 0.165 0.835 35 H 0.143 0.857 36 H 0.260 0.740 37 H 0.163 0.837 38 H 0.162 0.838 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.060 0.940 44 H 0.083 0.917 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.156 -12.445 19.594 23.241 hybrid contribution -0.095 0.537 -1.012 1.149 sum 1.060 -11.908 18.582 22.096 Atomic orbital electron populations 1.22248 0.91793 1.03667 1.05076 1.23926 0.96258 0.97004 0.81495 0.83930 1.86952 1.80306 1.16737 1.38099 1.19885 0.96515 0.85585 0.92800 1.20604 1.06501 0.89460 1.00598 1.21293 0.95903 0.97131 0.94941 1.21404 1.03189 0.98922 0.94161 1.20753 0.95869 0.91309 1.01009 1.21092 1.09499 0.95815 0.94427 1.21074 0.85289 0.89237 0.99321 0.85929 1.55529 1.27984 1.76354 1.25889 1.04925 0.75562 0.75702 0.73073 1.93542 1.38131 1.80357 1.85646 1.93517 1.86661 1.34954 1.81306 1.30396 1.17599 1.16761 1.06620 1.18202 0.94370 0.93703 0.89396 1.22708 0.96350 1.01574 1.02753 1.22847 1.03301 0.97520 1.00701 1.20917 1.14730 1.25786 0.92559 0.92805 1.25638 0.96204 0.95515 0.99782 1.70045 1.44930 1.29090 1.13305 0.86758 0.82059 0.79059 0.77721 1.20202 1.23631 1.14768 0.92096 0.89642 0.88752 0.83805 0.82010 0.83520 0.85708 0.74040 0.83694 0.83768 0.93300 0.92546 0.91667 0.90840 0.93965 0.91694 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 9.50 71.98 0.68 -1.76 16 2 C 0.07 1.24 3.98 31.18 0.12 1.36 16 3 H 0.14 1.96 8.10 -2.39 -0.02 1.94 16 4 O -0.31 -6.61 10.84 -97.93 -1.06 -7.67 16 5 C 0.10 2.20 6.94 22.68 0.16 2.35 16 6 C -0.15 -2.83 10.06 22.45 0.23 -2.61 16 7 C -0.07 -1.19 10.02 22.21 0.22 -0.97 16 8 C -0.16 -3.02 10.07 22.31 0.22 -2.79 16 9 C -0.07 -1.72 10.03 22.18 0.22 -1.49 16 10 C -0.21 -4.94 5.93 -19.52 -0.12 -5.06 16 11 C 0.16 3.43 3.10 45.13 0.14 3.57 16 12 H 0.12 2.39 7.11 -2.38 -0.02 2.37 16 13 N -1.10 -25.96 5.44 -168.80 -0.92 -26.88 16 14 S 2.61 81.45 4.42 -56.49 -0.25 81.20 16 15 O -0.99 -36.21 15.92 -127.65 -2.03 -38.24 16 16 O -0.97 -33.94 14.92 -127.65 -1.90 -35.85 16 17 C -0.58 -18.96 4.91 71.98 0.35 -18.61 16 18 C 0.05 1.96 0.52 -52.93 -0.03 1.93 16 19 C -0.18 -7.54 6.95 71.98 0.50 -7.04 16 20 C -0.19 -7.75 7.22 71.98 0.52 -7.23 16 21 C -0.50 -26.10 8.62 25.60 0.22 -25.88 16 22 H 0.05 3.00 7.99 -2.91 -0.02 2.98 16 23 C 0.03 1.52 5.31 84.65 0.45 1.97 16 24 N -0.93 -55.82 13.96 21.45 0.30 -55.52 16 25 Si 0.91 43.25 22.79 68.60 1.56 44.81 16 26 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 27 H -0.31 -14.76 7.11 99.48 0.71 -14.05 16 28 H -0.22 -9.66 4.67 99.48 0.46 -9.20 16 29 H 0.06 0.95 8.11 -2.39 -0.02 0.93 16 30 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 33 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 34 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 35 H 0.12 3.31 7.53 -2.91 -0.02 3.28 16 36 H 0.42 8.76 8.85 -96.74 -0.86 7.90 16 37 H 0.14 4.03 7.55 -2.39 -0.02 4.01 16 38 H 0.14 4.22 8.14 -2.39 -0.02 4.20 16 39 H 0.05 1.95 6.21 -2.39 -0.01 1.94 16 40 H 0.06 2.50 4.32 -2.39 -0.01 2.49 16 41 H 0.06 2.63 8.11 -2.38 -0.02 2.61 16 42 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 43 H 0.04 1.82 2.28 -2.39 -0.01 1.82 16 44 H 0.06 2.49 5.47 -2.39 -0.01 2.48 16 45 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -71.30 356.98 -0.48 -71.78 By element: Atomic # 1 Polarization: 28.67 SS G_CDS: -0.08 Total: 28.59 kcal Atomic # 6 Polarization: -66.14 SS G_CDS: 3.90 Total: -62.24 kcal Atomic # 7 Polarization: -81.78 SS G_CDS: -0.62 Total: -82.39 kcal Atomic # 8 Polarization: -76.76 SS G_CDS: -5.00 Total: -81.75 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 1.56 Total: 44.81 kcal Atomic # 16 Polarization: 81.45 SS G_CDS: -0.25 Total: 81.20 kcal Total: -71.30 -0.48 -71.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451555909.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.039 kcal (2) G-P(sol) polarization free energy of solvation -71.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds