Wall clock time and date at job start Tue Mar 31 2020 23:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.80400 * 2 1 4 4 O 1.43755 * 110.74788 * 236.68403 * 2 1 3 5 5 C 1.36133 * 109.28756 * 269.22336 * 4 2 1 6 6 C 1.39290 * 129.88053 * 161.43638 * 5 4 2 7 7 C 1.37927 * 120.24546 * 179.56169 * 6 5 4 8 8 C 1.38283 * 120.35218 * 0.02576 * 7 6 5 9 9 C 1.38355 * 119.76334 * 0.19622 * 8 7 6 10 10 C 1.37731 * 119.98072 * 359.96705 * 9 8 7 11 11 C 1.51643 * 132.17964 * 179.63010 * 10 9 8 12 12 H 1.08998 * 110.97612 * 313.87882 * 11 10 9 13 13 N 1.46504 * 110.94105 * 77.55981 * 11 10 9 14 14 S 1.65599 * 119.99387 * 227.73135 * 13 11 10 15 15 O 1.42096 * 104.27862 * 307.31825 * 14 13 11 16 16 O 1.42101 * 104.27356 * 179.46439 * 14 13 11 17 17 C 1.81399 * 104.45330 * 63.39427 * 14 13 11 18 18 C 1.52995 * 109.47281 * 179.97438 * 17 14 13 19 19 C 1.52996 * 109.47426 * 59.99404 * 18 17 14 20 20 C 1.53007 * 109.47163 * 299.99659 * 18 17 14 21 21 C 1.50694 * 109.47306 * 180.02562 * 18 17 14 22 22 H 1.08000 * 120.00266 * 359.97438 * 21 18 17 23 23 C 1.37880 * 120.00429 * 179.72336 * 21 18 17 24 24 N 1.31513 * 119.99371 * 0.27282 * 23 21 18 25 25 Si 1.86798 * 120.00469 * 180.27271 * 23 21 18 26 26 H 1.48509 * 109.46959 * 0.02562 * 25 23 21 27 27 H 1.48494 * 109.47188 * 119.99801 * 25 23 21 28 28 H 1.48493 * 109.47392 * 240.00284 * 25 23 21 29 29 H 1.09004 * 109.47630 * 296.69414 * 1 2 3 30 30 H 1.09004 * 109.47247 * 56.68942 * 1 2 3 31 31 H 1.09001 * 109.47261 * 176.68952 * 1 2 3 32 32 H 1.08004 * 119.87286 * 359.59260 * 6 5 4 33 33 H 1.08004 * 119.82551 * 180.02562 * 7 6 5 34 34 H 1.08006 * 120.11873 * 180.21403 * 8 7 6 35 35 H 1.08000 * 120.00878 * 179.97438 * 9 8 7 36 36 H 0.96999 * 120.00499 * 47.72810 * 13 11 10 37 37 H 1.08996 * 109.46855 * 59.93203 * 17 14 13 38 38 H 1.08999 * 109.46675 * 299.93553 * 17 14 13 39 39 H 1.08999 * 109.47366 * 179.97438 * 19 18 17 40 40 H 1.08999 * 109.47380 * 300.00238 * 19 18 17 41 41 H 1.09007 * 109.46719 * 60.00485 * 19 18 17 42 42 H 1.08996 * 109.47323 * 300.00448 * 20 18 17 43 43 H 1.09008 * 109.46787 * 60.00051 * 20 18 17 44 44 H 1.08999 * 109.47109 * 180.02562 * 20 18 17 45 45 H 0.97008 * 119.99885 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0189 0.0000 4 8 2.0393 -0.7384 -1.1234 5 6 2.2148 -2.0396 -0.7639 6 6 2.3464 -3.1758 -1.5589 7 6 2.5273 -4.4134 -0.9774 8 6 2.5792 -4.5380 0.3988 9 6 2.4447 -3.4149 1.1957 10 6 2.2607 -2.1786 0.6172 11 6 2.0780 -0.7945 1.2092 12 1 1.3548 -0.8112 2.0245 13 7 3.3589 -0.2446 1.6600 14 16 3.4828 0.4404 3.1626 15 8 2.4326 1.3968 3.1995 16 8 4.8429 0.8419 3.2534 17 6 3.1434 -0.9223 4.3107 18 6 3.2297 -0.4102 5.7499 19 6 2.1991 0.7011 5.9584 20 6 4.6331 0.1400 6.0121 21 6 2.9484 -1.5424 6.7037 22 1 2.7295 -2.5286 6.3217 23 6 2.9755 -1.3206 8.0643 24 7 3.2417 -0.1196 8.5294 25 14 2.6343 -2.7258 9.2468 26 1 2.3650 -3.9666 8.4765 27 1 3.8155 -2.9339 10.1223 28 1 1.4518 -2.3943 10.0815 29 1 -0.3634 0.4617 0.9181 30 1 -0.3634 0.5644 -0.8588 31 1 -0.3634 -1.0259 -0.0593 32 1 2.3071 -3.0872 -2.6346 33 1 2.6290 -5.2898 -1.6003 34 1 2.7244 -5.5084 0.8501 35 1 2.4842 -3.5077 2.2709 36 1 4.1343 -0.2817 1.0784 37 1 3.8773 -1.7143 4.1616 38 1 2.1434 -1.3139 4.1243 39 1 2.2603 1.0657 6.9838 40 1 2.4031 1.5200 5.2685 41 1 1.1993 0.3091 5.7716 42 1 5.3674 -0.6516 5.8635 43 1 4.8371 0.9590 5.3222 44 1 4.6947 0.5045 7.0375 45 1 3.2604 0.0366 9.4867 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451555910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:04 Heat of formation + Delta-G solvation = -77.689230 kcal Electronic energy + Delta-G solvation = -28687.891220 eV Core-core repulsion = 24798.072697 eV Total energy + Delta-G solvation = -3889.818524 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.52294 -37.69821 -36.63655 -36.33598 -35.44209 -35.17595 -31.74495 -31.64357 -30.87815 -29.97753 -26.74824 -26.05664 -25.76473 -25.26559 -22.90834 -21.82928 -21.77717 -19.72269 -18.89609 -17.80781 -17.34925 -16.94370 -16.10142 -16.03283 -15.80146 -15.50555 -15.33754 -14.78143 -14.66446 -14.07123 -13.75143 -13.63173 -13.15595 -13.11422 -12.91798 -12.65622 -12.55982 -12.44671 -12.19606 -12.14053 -11.87437 -11.58305 -11.51321 -11.22815 -11.14494 -11.10768 -11.02272 -10.95969 -10.76003 -10.40524 -10.33288 -10.15943 -9.78501 -9.70431 -9.38499 -9.13210 -8.73131 -8.44481 -8.37024 -6.07611 -4.19709 0.70641 1.09729 1.21595 3.02932 3.05972 3.22111 3.30888 3.32830 3.60725 4.10839 4.22227 4.26910 4.34699 4.61115 4.67194 4.79989 4.85156 4.91538 5.04510 5.14807 5.18190 5.21213 5.39810 5.51324 5.54906 5.60438 5.66298 5.80247 5.86830 5.95838 6.13553 6.24461 6.30449 6.31795 6.43856 6.64539 6.74470 6.85134 6.93482 7.01852 7.01907 7.26597 7.45341 7.63835 7.93616 8.04857 8.28190 8.78887 9.46038 10.93771 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014115 B = 0.003877 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.289407 B = 7219.994349 C = 8283.146464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.067 3.933 3 H 0.126 0.874 4 O -0.298 6.298 5 C 0.118 3.882 6 C -0.146 4.146 7 C -0.079 4.079 8 C -0.153 4.153 9 C -0.053 4.053 10 C -0.189 4.189 11 C 0.171 3.829 12 H 0.117 0.883 13 N -1.115 6.115 14 S 2.588 3.412 15 O -0.961 6.961 16 O -0.960 6.960 17 C -0.580 4.580 18 C 0.082 3.918 19 C -0.164 4.164 20 C -0.164 4.164 21 C -0.501 4.501 22 H 0.059 0.941 23 C 0.065 3.935 24 N -0.883 5.883 25 Si 0.896 3.104 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.283 1.283 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.415 0.585 37 H 0.121 0.879 38 H 0.116 0.884 39 H 0.095 0.905 40 H 0.028 0.972 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.027 0.973 44 H 0.096 0.904 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.799 -5.543 -17.814 19.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.009 3.991 3 H 0.144 0.856 4 O -0.211 6.211 5 C 0.072 3.928 6 C -0.165 4.165 7 C -0.097 4.097 8 C -0.171 4.171 9 C -0.072 4.072 10 C -0.192 4.192 11 C 0.063 3.937 12 H 0.135 0.865 13 N -0.869 5.869 14 S 2.687 3.313 15 O -0.951 6.951 16 O -0.950 6.950 17 C -0.714 4.714 18 C 0.080 3.920 19 C -0.221 4.221 20 C -0.222 4.222 21 C -0.541 4.541 22 H 0.078 0.922 23 C -0.137 4.137 24 N -0.521 5.521 25 Si 0.723 3.277 26 H -0.198 1.198 27 H -0.209 1.209 28 H -0.209 1.209 29 H 0.103 0.897 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.248 0.752 37 H 0.139 0.861 38 H 0.134 0.866 39 H 0.114 0.886 40 H 0.047 0.953 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.046 0.954 44 H 0.114 0.886 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.682 -4.345 -17.582 18.481 hybrid contribution 0.023 -1.530 0.666 1.669 sum -3.659 -5.874 -16.915 18.277 Atomic orbital electron populations 1.22221 0.93176 1.03425 1.04021 1.23895 0.95198 0.96957 0.83044 0.85617 1.86896 1.79800 1.16484 1.37968 1.19605 0.95325 0.85255 0.92663 1.20249 1.07076 0.89488 0.99678 1.20907 0.97389 0.96341 0.95079 1.21079 1.03794 0.98632 0.93581 1.20491 0.95618 0.90416 1.00632 1.20912 1.08897 0.95251 0.94123 1.20752 0.86154 0.88654 0.98187 0.86535 1.56022 1.16911 1.78236 1.35725 1.05857 0.74603 0.77352 0.73532 1.93552 1.58331 1.57816 1.85401 1.93567 1.34997 1.81381 1.85098 1.30541 1.10095 1.16818 1.13971 1.17941 0.93649 0.95145 0.85264 1.22276 0.98140 0.97128 1.04584 1.22282 0.96568 0.98712 1.04630 1.20956 1.48301 0.94582 0.90245 0.92243 1.24937 0.94826 0.95734 0.98221 1.69810 1.48565 1.20247 1.13464 0.86483 0.77949 0.82260 0.80970 1.19841 1.20940 1.20932 0.89698 0.90908 0.91629 0.85545 0.85220 0.85295 0.85158 0.75179 0.86098 0.86560 0.88613 0.95336 0.94468 0.94443 0.95436 0.88554 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 9.51 37.16 0.35 -1.29 16 2 C 0.07 0.77 4.04 -25.83 -0.10 0.67 16 3 H 0.13 1.42 8.10 -51.93 -0.42 1.00 16 4 O -0.30 -3.70 10.81 -20.16 -0.22 -3.92 16 5 C 0.12 1.41 6.92 -38.95 -0.27 1.14 16 6 C -0.15 -1.48 10.06 -39.30 -0.40 -1.87 16 7 C -0.08 -0.70 10.02 -39.68 -0.40 -1.10 16 8 C -0.15 -1.46 10.07 -39.52 -0.40 -1.86 16 9 C -0.05 -0.59 10.03 -39.72 -0.40 -0.99 16 10 C -0.19 -2.28 5.93 -104.10 -0.62 -2.89 16 11 C 0.17 2.15 3.12 -67.71 -0.21 1.93 16 12 H 0.12 1.38 7.34 -51.93 -0.38 1.00 16 13 N -1.12 -15.43 5.39 -4.71 -0.03 -15.45 16 14 S 2.59 46.45 4.37 -107.50 -0.47 45.99 16 15 O -0.96 -19.10 15.47 -57.54 -0.89 -20.00 16 16 O -0.96 -19.92 15.70 -57.54 -0.90 -20.82 16 17 C -0.58 -10.85 4.97 37.16 0.18 -10.66 16 18 C 0.08 1.94 0.52 -155.66 -0.08 1.86 16 19 C -0.16 -3.90 7.78 37.16 0.29 -3.61 16 20 C -0.16 -3.98 7.77 37.16 0.29 -3.69 16 21 C -0.50 -12.79 8.01 -34.44 -0.28 -13.06 16 22 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 23 C 0.06 1.68 5.15 -17.82 -0.09 1.59 16 24 N -0.88 -23.67 9.35 55.43 0.52 -23.15 16 25 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 32 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 33 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 34 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 35 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.41 5.23 8.92 -34.47 -0.31 4.93 16 37 H 0.12 2.06 8.14 -51.93 -0.42 1.64 16 38 H 0.12 1.91 7.76 -51.92 -0.40 1.51 16 39 H 0.10 2.48 6.08 -51.93 -0.32 2.17 16 40 H 0.03 0.64 5.47 -51.93 -0.28 0.36 16 41 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.03 0.63 5.46 -51.92 -0.28 0.35 16 44 H 0.10 2.52 6.06 -51.93 -0.31 2.21 16 45 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 368.10 15.07 5.55 5.55 Total: -1.00 -31.38 368.10 -10.06 -41.44 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -6.48 Total: 8.99 kcal Atomic # 6 Polarization: -31.71 SS G_CDS: -2.12 Total: -33.84 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.49 Total: -38.61 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: -2.01 Total: -44.73 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 46.45 SS G_CDS: -0.47 Total: 45.99 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.38 -10.06 -41.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451555910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.252 kcal (2) G-P(sol) polarization free energy of solvation -31.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds