Wall clock time and date at job start Tue Mar 31 2020 23:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.80400 * 2 1 4 4 O 1.43755 * 110.74788 * 236.68403 * 2 1 3 5 5 C 1.36133 * 109.28756 * 269.22336 * 4 2 1 6 6 C 1.39290 * 129.88053 * 161.43638 * 5 4 2 7 7 C 1.37927 * 120.24546 * 179.56169 * 6 5 4 8 8 C 1.38283 * 120.35218 * 0.02576 * 7 6 5 9 9 C 1.38355 * 119.76334 * 0.19622 * 8 7 6 10 10 C 1.37731 * 119.98072 * 359.96705 * 9 8 7 11 11 C 1.51643 * 132.17964 * 179.63010 * 10 9 8 12 12 H 1.08998 * 110.97612 * 313.87882 * 11 10 9 13 13 N 1.46504 * 110.94105 * 77.55981 * 11 10 9 14 14 S 1.65599 * 119.99387 * 227.73135 * 13 11 10 15 15 O 1.42096 * 104.27862 * 307.31825 * 14 13 11 16 16 O 1.42101 * 104.27356 * 179.46439 * 14 13 11 17 17 C 1.81399 * 104.45330 * 63.39427 * 14 13 11 18 18 C 1.52995 * 109.47281 * 179.97438 * 17 14 13 19 19 C 1.52996 * 109.47426 * 59.99404 * 18 17 14 20 20 C 1.53007 * 109.47163 * 299.99659 * 18 17 14 21 21 C 1.50694 * 109.47306 * 180.02562 * 18 17 14 22 22 H 1.08000 * 120.00266 * 359.97438 * 21 18 17 23 23 C 1.37880 * 120.00429 * 179.72336 * 21 18 17 24 24 N 1.31513 * 119.99371 * 0.27282 * 23 21 18 25 25 Si 1.86798 * 120.00469 * 180.27271 * 23 21 18 26 26 H 1.48509 * 109.46959 * 0.02562 * 25 23 21 27 27 H 1.48494 * 109.47188 * 119.99801 * 25 23 21 28 28 H 1.48493 * 109.47392 * 240.00284 * 25 23 21 29 29 H 1.09004 * 109.47630 * 296.69414 * 1 2 3 30 30 H 1.09004 * 109.47247 * 56.68942 * 1 2 3 31 31 H 1.09001 * 109.47261 * 176.68952 * 1 2 3 32 32 H 1.08004 * 119.87286 * 359.59260 * 6 5 4 33 33 H 1.08004 * 119.82551 * 180.02562 * 7 6 5 34 34 H 1.08006 * 120.11873 * 180.21403 * 8 7 6 35 35 H 1.08000 * 120.00878 * 179.97438 * 9 8 7 36 36 H 0.96999 * 120.00499 * 47.72810 * 13 11 10 37 37 H 1.08996 * 109.46855 * 59.93203 * 17 14 13 38 38 H 1.08999 * 109.46675 * 299.93553 * 17 14 13 39 39 H 1.08999 * 109.47366 * 179.97438 * 19 18 17 40 40 H 1.08999 * 109.47380 * 300.00238 * 19 18 17 41 41 H 1.09007 * 109.46719 * 60.00485 * 19 18 17 42 42 H 1.08996 * 109.47323 * 300.00448 * 20 18 17 43 43 H 1.09008 * 109.46787 * 60.00051 * 20 18 17 44 44 H 1.08999 * 109.47109 * 180.02562 * 20 18 17 45 45 H 0.97008 * 119.99885 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9171 1.0189 0.0000 4 8 2.0393 -0.7384 -1.1234 5 6 2.2148 -2.0396 -0.7639 6 6 2.3464 -3.1758 -1.5589 7 6 2.5273 -4.4134 -0.9774 8 6 2.5792 -4.5380 0.3988 9 6 2.4447 -3.4149 1.1957 10 6 2.2607 -2.1786 0.6172 11 6 2.0780 -0.7945 1.2092 12 1 1.3548 -0.8112 2.0245 13 7 3.3589 -0.2446 1.6600 14 16 3.4828 0.4404 3.1626 15 8 2.4326 1.3968 3.1995 16 8 4.8429 0.8419 3.2534 17 6 3.1434 -0.9223 4.3107 18 6 3.2297 -0.4102 5.7499 19 6 2.1991 0.7011 5.9584 20 6 4.6331 0.1400 6.0121 21 6 2.9484 -1.5424 6.7037 22 1 2.7295 -2.5286 6.3217 23 6 2.9755 -1.3206 8.0643 24 7 3.2417 -0.1196 8.5294 25 14 2.6343 -2.7258 9.2468 26 1 2.3650 -3.9666 8.4765 27 1 3.8155 -2.9339 10.1223 28 1 1.4518 -2.3943 10.0815 29 1 -0.3634 0.4617 0.9181 30 1 -0.3634 0.5644 -0.8588 31 1 -0.3634 -1.0259 -0.0593 32 1 2.3071 -3.0872 -2.6346 33 1 2.6290 -5.2898 -1.6003 34 1 2.7244 -5.5084 0.8501 35 1 2.4842 -3.5077 2.2709 36 1 4.1343 -0.2817 1.0784 37 1 3.8773 -1.7143 4.1616 38 1 2.1434 -1.3139 4.1243 39 1 2.2603 1.0657 6.9838 40 1 2.4031 1.5200 5.2685 41 1 1.1993 0.3091 5.7716 42 1 5.3674 -0.6516 5.8635 43 1 4.8371 0.9590 5.3222 44 1 4.6947 0.5045 7.0375 45 1 3.2604 0.0366 9.4867 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451555910.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:03 Heat of formation + Delta-G solvation = -97.662767 kcal Electronic energy + Delta-G solvation = -28688.757338 eV Core-core repulsion = 24798.072697 eV Total energy + Delta-G solvation = -3890.684641 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.37301 -38.48076 -38.16424 -38.14315 -36.96534 -36.25627 -33.63809 -32.56444 -31.66457 -30.78582 -28.37902 -27.69464 -27.25954 -26.91927 -23.69751 -22.71889 -22.58813 -21.41770 -20.37872 -18.96428 -18.57152 -17.88004 -17.77240 -17.12845 -16.91283 -16.71182 -16.54696 -16.48427 -15.90066 -15.02891 -14.88368 -14.72787 -14.53031 -14.43458 -14.37139 -13.87357 -13.79253 -13.68517 -13.39138 -13.16470 -13.07759 -12.94780 -12.91377 -12.76166 -12.70553 -12.53387 -12.43418 -12.20404 -12.13171 -12.02018 -11.94865 -11.82260 -11.57176 -11.41123 -10.74697 -10.44992 -10.41489 -9.92154 -9.17810 -8.02654 -6.20886 -0.71341 0.28219 0.43411 1.43700 1.47251 1.56121 1.78037 2.22452 2.44629 2.74743 2.82124 3.18261 3.21734 3.32105 3.40886 3.72831 3.88159 3.99083 4.05111 4.16861 4.22196 4.25832 4.36937 4.51613 4.58772 4.62226 4.73072 4.79761 4.85692 4.86769 4.90051 4.97714 5.07838 5.09412 5.18756 5.38110 5.39449 5.47413 5.50472 5.57702 5.65718 5.68733 5.89054 5.97467 6.11480 6.21672 6.34154 6.84056 7.47598 8.97469 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014115 B = 0.003877 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.289407 B = 7219.994349 C = 8283.146464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.064 3.936 3 H 0.124 0.876 4 O -0.308 6.308 5 C 0.098 3.902 6 C -0.151 4.151 7 C -0.073 4.073 8 C -0.153 4.153 9 C -0.068 4.068 10 C -0.201 4.201 11 C 0.161 3.839 12 H 0.122 0.878 13 N -1.101 6.101 14 S 2.609 3.391 15 O -0.982 6.982 16 O -0.990 6.990 17 C -0.583 4.583 18 C 0.070 3.930 19 C -0.160 4.160 20 C -0.161 4.161 21 C -0.513 4.513 22 H 0.065 0.935 23 C 0.018 3.982 24 N -0.908 5.908 25 Si 0.953 3.047 26 H -0.264 1.264 27 H -0.286 1.286 28 H -0.284 1.284 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.142 0.858 33 H 0.162 0.838 34 H 0.151 0.849 35 H 0.133 0.867 36 H 0.422 0.578 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.070 0.930 40 H 0.033 0.967 41 H 0.043 0.957 42 H 0.039 0.961 43 H 0.030 0.970 44 H 0.072 0.928 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.433 -7.772 -19.398 21.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.006 3.994 3 H 0.142 0.858 4 O -0.223 6.223 5 C 0.052 3.948 6 C -0.170 4.170 7 C -0.090 4.090 8 C -0.171 4.171 9 C -0.087 4.087 10 C -0.203 4.203 11 C 0.054 3.946 12 H 0.140 0.860 13 N -0.858 5.858 14 S 2.707 3.293 15 O -0.972 6.972 16 O -0.981 6.981 17 C -0.716 4.716 18 C 0.068 3.932 19 C -0.217 4.217 20 C -0.219 4.219 21 C -0.552 4.552 22 H 0.083 0.917 23 C -0.181 4.181 24 N -0.547 5.547 25 Si 0.779 3.221 26 H -0.188 1.188 27 H -0.212 1.212 28 H -0.210 1.210 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.160 0.840 33 H 0.179 0.821 34 H 0.168 0.832 35 H 0.151 0.849 36 H 0.257 0.743 37 H 0.156 0.844 38 H 0.157 0.843 39 H 0.089 0.911 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.049 0.951 44 H 0.090 0.910 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.315 -6.580 -19.170 20.722 hybrid contribution 0.222 -0.884 1.068 1.404 sum -4.093 -7.465 -18.102 20.004 Atomic orbital electron populations 1.22213 0.91729 1.03832 1.04731 1.23960 0.96345 0.96639 0.82467 0.85845 1.86867 1.80198 1.17007 1.38211 1.19881 0.96452 0.85437 0.93045 1.20590 1.06456 0.89390 1.00537 1.21299 0.95634 0.96897 0.95217 1.21409 1.02699 0.99032 0.93968 1.20698 0.96177 0.90707 1.01132 1.20876 1.10169 0.95075 0.94216 1.20993 0.85268 0.89552 0.98832 0.86048 1.55589 1.18057 1.78066 1.34046 1.04971 0.73401 0.76899 0.74011 1.93520 1.58821 1.58777 1.86036 1.93519 1.36573 1.82064 1.85925 1.30454 1.12221 1.17622 1.11257 1.17925 0.92652 0.94632 0.87983 1.22204 0.98817 0.97628 1.03101 1.22223 0.97577 0.98906 1.03193 1.21301 1.47784 0.95325 0.90826 0.91654 1.25661 0.94945 0.97648 0.99883 1.69952 1.49401 1.21817 1.13519 0.85579 0.77401 0.80070 0.79007 1.18799 1.21193 1.21026 0.89393 0.89740 0.91413 0.84033 0.82075 0.83177 0.84938 0.74311 0.84424 0.84276 0.91132 0.94869 0.93775 0.94203 0.95095 0.90970 0.92987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.00 9.51 71.98 0.68 -2.31 16 2 C 0.06 1.41 4.04 31.18 0.13 1.54 16 3 H 0.12 2.72 8.10 -2.39 -0.02 2.70 16 4 O -0.31 -7.34 10.81 -95.07 -1.03 -8.36 16 5 C 0.10 2.18 6.92 22.68 0.16 2.34 16 6 C -0.15 -2.68 10.06 22.45 0.23 -2.46 16 7 C -0.07 -1.04 10.02 22.21 0.22 -0.82 16 8 C -0.15 -2.47 10.07 22.31 0.22 -2.24 16 9 C -0.07 -1.39 10.03 22.18 0.22 -1.17 16 10 C -0.20 -4.52 5.93 -19.53 -0.12 -4.63 16 11 C 0.16 3.85 3.12 45.13 0.14 3.99 16 12 H 0.12 2.72 7.34 -2.39 -0.02 2.70 16 13 N -1.10 -29.37 5.39 -168.80 -0.91 -30.28 16 14 S 2.61 91.94 4.37 -56.49 -0.25 91.70 16 15 O -0.98 -38.57 15.47 -127.65 -1.98 -40.55 16 16 O -0.99 -40.89 15.70 -127.65 -2.00 -42.89 16 17 C -0.58 -21.04 4.97 71.98 0.36 -20.68 16 18 C 0.07 3.28 0.52 -52.93 -0.03 3.25 16 19 C -0.16 -7.66 7.78 71.98 0.56 -7.10 16 20 C -0.16 -7.90 7.77 71.98 0.56 -7.35 16 21 C -0.51 -25.83 8.01 25.60 0.21 -25.62 16 22 H 0.07 3.14 7.74 -2.91 -0.02 3.11 16 23 C 0.02 0.93 5.15 84.66 0.44 1.37 16 24 N -0.91 -49.46 9.35 21.45 0.20 -49.26 16 25 Si 0.95 41.22 29.54 68.60 2.03 43.24 16 26 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 27 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 28 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 29 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.07 1.17 8.08 -2.39 -0.02 1.16 16 32 H 0.14 2.00 8.06 -2.91 -0.02 1.97 16 33 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 34 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 35 H 0.13 2.53 8.06 -2.91 -0.02 2.51 16 36 H 0.42 10.28 8.92 -96.75 -0.86 9.42 16 37 H 0.14 4.47 8.14 -2.39 -0.02 4.45 16 38 H 0.14 4.32 7.76 -2.39 -0.02 4.30 16 39 H 0.07 3.74 6.08 -2.39 -0.01 3.72 16 40 H 0.03 1.52 5.47 -2.39 -0.01 1.50 16 41 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 42 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.03 1.45 5.46 -2.38 -0.01 1.44 16 44 H 0.07 3.88 6.06 -2.39 -0.01 3.86 16 45 H 0.26 13.61 8.31 -92.70 -0.77 12.84 16 Total: -1.00 -66.67 368.10 0.19 -66.49 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: 0.14 Total: 31.81 kcal Atomic # 6 Polarization: -65.87 SS G_CDS: 3.98 Total: -61.89 kcal Atomic # 7 Polarization: -78.83 SS G_CDS: -0.71 Total: -79.54 kcal Atomic # 8 Polarization: -86.80 SS G_CDS: -5.01 Total: -91.80 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.24 kcal Atomic # 16 Polarization: 91.94 SS G_CDS: -0.25 Total: 91.70 kcal Total: -66.67 0.19 -66.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451555910.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.176 kcal (2) G-P(sol) polarization free energy of solvation -66.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds