Wall clock time and date at job start Tue Mar 31 2020 23:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 110.66888 * 2 1 4 4 O 1.43761 * 110.75113 * 123.41266 * 2 1 3 5 5 C 1.36138 * 109.28998 * 145.87706 * 4 2 1 6 6 C 1.39285 * 129.88066 * 161.47012 * 5 4 2 7 7 C 1.37931 * 120.24077 * 179.57992 * 6 5 4 8 8 C 1.38285 * 120.35416 * 0.02562 * 7 6 5 9 9 C 1.38348 * 119.76415 * 0.18262 * 8 7 6 10 10 C 1.37742 * 119.97428 * 359.97438 * 9 8 7 11 11 C 1.51648 * 132.16887 * 179.63071 * 10 9 8 12 12 H 1.09007 * 110.97430 * 313.88473 * 11 10 9 13 13 N 1.46494 * 110.94746 * 77.57164 * 11 10 9 14 14 S 1.65592 * 120.00412 * 235.92612 * 13 11 10 15 15 O 1.42096 * 104.28239 * 179.81451 * 14 13 11 16 16 O 1.42099 * 104.27712 * 307.67470 * 14 13 11 17 17 C 1.81408 * 104.44765 * 63.74098 * 14 13 11 18 18 C 1.53001 * 109.46830 * 179.76346 * 17 14 13 19 19 C 1.53002 * 109.47454 * 299.99957 * 18 17 14 20 20 C 1.52994 * 109.47177 * 60.00617 * 18 17 14 21 21 C 1.50707 * 109.46875 * 180.02562 * 18 17 14 22 22 H 1.08005 * 119.99533 * 0.02562 * 21 18 17 23 23 C 1.37873 * 120.00191 * 179.97438 * 21 18 17 24 24 N 1.31516 * 119.99937 * 0.02562 * 23 21 18 25 25 Si 1.86797 * 120.00160 * 179.97438 * 23 21 18 26 26 H 1.48503 * 109.46828 * 90.00387 * 25 23 21 27 27 H 1.48500 * 109.47026 * 210.00110 * 25 23 21 28 28 H 1.48497 * 109.46990 * 330.00204 * 25 23 21 29 29 H 1.08997 * 109.47339 * 183.21646 * 1 2 3 30 30 H 1.09008 * 109.47152 * 303.20777 * 1 2 3 31 31 H 1.08995 * 109.47346 * 63.20890 * 1 2 3 32 32 H 1.07999 * 119.88439 * 359.55157 * 6 5 4 33 33 H 1.07998 * 119.82142 * 179.97438 * 7 6 5 34 34 H 1.08001 * 120.11628 * 180.19462 * 8 7 6 35 35 H 1.08000 * 120.01279 * 179.97438 * 9 8 7 36 36 H 0.97001 * 119.99365 * 55.65128 * 13 11 10 37 37 H 1.08996 * 109.47262 * 299.76844 * 17 14 13 38 38 H 1.09001 * 109.46921 * 59.77179 * 17 14 13 39 39 H 1.09004 * 109.46686 * 60.00688 * 19 18 17 40 40 H 1.08998 * 109.47167 * 179.97438 * 19 18 17 41 41 H 1.09001 * 109.47303 * 300.00323 * 19 18 17 42 42 H 1.09001 * 109.47463 * 59.99682 * 20 18 17 43 43 H 1.08998 * 109.47365 * 179.97438 * 20 18 17 44 44 H 1.09004 * 109.47336 * 299.99540 * 20 18 17 45 45 H 0.97001 * 120.00190 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9147 1.0199 0.0000 4 8 2.0393 -0.7403 1.1222 5 6 3.1933 -1.3660 0.7617 6 6 4.2084 -1.8945 1.5557 7 6 5.3012 -2.5017 0.9732 8 6 5.3998 -2.5911 -0.4033 9 6 4.3980 -2.0648 -1.1992 10 6 3.3073 -1.4552 -0.6195 11 6 2.0784 -0.7916 -1.2105 12 1 2.3511 -0.1196 -2.0243 13 7 1.1096 -1.7926 -1.6637 14 16 0.5791 -1.7808 -3.2323 15 8 -0.3268 -2.8732 -3.3042 16 8 0.1364 -0.4470 -3.4425 17 6 2.0654 -2.1204 -4.2154 18 6 1.7003 -2.1415 -5.7010 19 6 0.6600 -3.2343 -5.9552 20 6 1.1222 -0.7834 -6.1035 21 6 2.9350 -2.4243 -6.5177 22 1 3.8849 -2.5745 -6.0261 23 6 2.8517 -2.4925 -7.8922 24 7 1.6949 -2.3102 -8.4907 25 14 4.3822 -2.8423 -8.9045 26 1 4.5291 -4.3085 -9.0890 27 1 4.2589 -2.1863 -10.2310 28 1 5.5751 -2.3102 -8.1981 29 1 -0.3634 -1.0260 0.0577 30 1 -0.3634 0.5629 0.8599 31 1 -0.3634 0.4632 -0.9173 32 1 4.1397 -1.8282 2.6315 33 1 6.0845 -2.9088 1.5953 34 1 6.2557 -3.0701 -0.8553 35 1 4.4711 -2.1320 -2.2746 36 1 0.7819 -2.4648 -1.0459 37 1 2.8065 -1.3420 -4.0343 38 1 2.4773 -3.0881 -3.9287 39 1 -0.2331 -3.0301 -5.3646 40 1 0.3997 -3.2490 -7.0135 41 1 1.0719 -4.2019 -5.6685 42 1 1.8634 -0.0049 -5.9224 43 1 0.8626 -0.7982 -7.1619 44 1 0.2291 -0.5792 -5.5128 45 1 1.6364 -2.3577 -9.4578 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451555911.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:42:08 Heat of formation + Delta-G solvation = -74.661966 kcal Electronic energy + Delta-G solvation = -28849.548831 eV Core-core repulsion = 24959.861580 eV Total energy + Delta-G solvation = -3889.687252 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.45943 -37.70647 -36.63810 -36.33099 -35.49762 -35.24085 -31.72373 -31.33231 -31.08607 -29.77475 -26.70888 -26.35246 -25.76338 -25.26263 -22.67707 -21.79759 -21.62124 -19.76805 -18.96700 -17.81724 -17.59938 -16.63764 -16.43146 -15.97454 -15.69159 -15.34146 -15.24907 -14.77957 -14.58809 -14.23118 -13.89911 -13.62330 -13.19401 -13.09540 -12.88245 -12.58180 -12.54635 -12.32242 -12.13283 -12.07959 -11.71626 -11.56114 -11.45657 -11.20141 -11.13462 -11.10338 -10.99840 -10.94312 -10.75241 -10.41868 -10.32790 -10.15487 -9.79537 -9.70170 -9.37872 -9.10924 -8.73451 -8.43840 -8.35187 -6.07151 -4.19346 0.72398 1.11503 1.24078 3.02775 3.05828 3.23171 3.30794 3.32161 3.62248 4.12792 4.21930 4.28035 4.35112 4.61357 4.68470 4.86850 4.89597 4.93744 5.05696 5.18253 5.19135 5.24468 5.42694 5.52691 5.60560 5.63143 5.70531 5.79980 5.94911 6.07727 6.15932 6.26154 6.31248 6.34738 6.46675 6.64882 6.74656 6.85209 6.93847 7.02167 7.04039 7.26799 7.45621 7.63921 7.93764 8.04965 8.28465 8.78928 9.46352 10.94198 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013682 B = 0.004142 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.941758 B = 6757.853590 C = 8236.347336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.071 3.929 3 H 0.099 0.901 4 O -0.300 6.300 5 C 0.117 3.883 6 C -0.146 4.146 7 C -0.079 4.079 8 C -0.152 4.152 9 C -0.053 4.053 10 C -0.192 4.192 11 C 0.170 3.830 12 H 0.118 0.882 13 N -1.112 6.112 14 S 2.589 3.411 15 O -0.961 6.961 16 O -0.961 6.961 17 C -0.581 4.581 18 C 0.083 3.917 19 C -0.164 4.164 20 C -0.163 4.163 21 C -0.502 4.502 22 H 0.059 0.941 23 C 0.065 3.935 24 N -0.883 5.883 25 Si 0.896 3.104 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.275 1.275 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.126 0.874 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.415 0.585 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.027 0.973 40 H 0.095 0.905 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.095 0.905 44 H 0.027 0.973 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.176 2.606 17.824 18.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.014 3.986 3 H 0.117 0.883 4 O -0.215 6.215 5 C 0.071 3.929 6 C -0.165 4.165 7 C -0.097 4.097 8 C -0.170 4.170 9 C -0.072 4.072 10 C -0.195 4.195 11 C 0.061 3.939 12 H 0.136 0.864 13 N -0.866 5.866 14 S 2.687 3.313 15 O -0.951 6.951 16 O -0.951 6.951 17 C -0.715 4.715 18 C 0.080 3.920 19 C -0.222 4.222 20 C -0.221 4.221 21 C -0.541 4.541 22 H 0.077 0.923 23 C -0.137 4.137 24 N -0.521 5.521 25 Si 0.723 3.277 26 H -0.206 1.206 27 H -0.211 1.211 28 H -0.200 1.200 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.144 0.856 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.248 0.752 37 H 0.134 0.866 38 H 0.138 0.862 39 H 0.046 0.954 40 H 0.114 0.886 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.114 0.886 44 H 0.046 0.954 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.066 2.936 17.466 17.975 hybrid contribution 1.530 -0.689 -0.458 1.739 sum 4.596 2.247 17.009 17.761 Atomic orbital electron populations 1.21855 0.91345 1.03736 1.03691 1.23723 0.96786 0.95161 0.82964 0.88289 1.86865 1.34617 1.62126 1.37850 1.19561 0.86938 0.93702 0.92687 1.20235 0.92645 1.03943 0.99643 1.20906 0.96676 0.97078 0.95077 1.21087 0.99854 1.02486 0.93574 1.20527 0.91608 0.94355 1.00717 1.20999 0.97707 1.06621 0.94184 1.20719 0.85450 0.89298 0.98386 0.86404 1.55987 1.57939 1.41934 1.30756 1.05815 0.77874 0.74744 0.72824 1.93566 1.61411 1.55287 1.84843 1.93548 1.79854 1.37601 1.84056 1.30558 1.17817 1.10192 1.12906 1.17934 0.96227 0.93651 0.84142 1.22280 0.96615 0.98133 1.05144 1.22271 0.97947 0.96551 1.05332 1.20917 0.93191 1.49126 0.90884 0.92310 1.24931 0.96114 0.94856 0.97785 1.69798 1.23509 1.49202 1.09603 0.86541 0.83110 0.78412 0.79605 1.20642 1.21120 1.19953 0.91323 0.91447 0.89084 0.85575 0.85232 0.85282 0.85072 0.75175 0.86576 0.86151 0.95428 0.88598 0.94462 0.94473 0.88615 0.95376 0.92713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.01 37.15 0.33 -1.28 16 2 C 0.07 0.80 4.22 -25.85 -0.11 0.69 16 3 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 4 O -0.30 -3.69 10.81 -20.18 -0.22 -3.91 16 5 C 0.12 1.41 7.04 -38.96 -0.27 1.14 16 6 C -0.15 -1.50 10.06 -39.30 -0.40 -1.90 16 7 C -0.08 -0.72 10.02 -39.68 -0.40 -1.12 16 8 C -0.15 -1.51 10.07 -39.52 -0.40 -1.91 16 9 C -0.05 -0.62 10.03 -39.72 -0.40 -1.01 16 10 C -0.19 -2.34 5.93 -104.10 -0.62 -2.95 16 11 C 0.17 2.09 3.47 -67.73 -0.24 1.86 16 12 H 0.12 1.37 7.80 -51.93 -0.41 0.96 16 13 N -1.11 -15.05 4.07 -4.72 -0.02 -15.07 16 14 S 2.59 45.82 4.37 -107.50 -0.47 45.35 16 15 O -0.96 -19.73 15.68 -57.54 -0.90 -20.63 16 16 O -0.96 -18.69 15.38 -57.54 -0.88 -19.58 16 17 C -0.58 -10.82 4.98 37.16 0.19 -10.63 16 18 C 0.08 1.94 0.52 -155.66 -0.08 1.86 16 19 C -0.16 -3.97 7.77 37.16 0.29 -3.69 16 20 C -0.16 -3.89 7.78 37.15 0.29 -3.60 16 21 C -0.50 -12.78 8.01 -34.44 -0.28 -13.06 16 22 H 0.06 1.45 7.74 -52.48 -0.41 1.04 16 23 C 0.07 1.69 5.15 -17.82 -0.09 1.60 16 24 N -0.88 -23.68 9.35 55.43 0.52 -23.16 16 25 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 28 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 29 H 0.07 0.76 7.11 -51.93 -0.37 0.39 16 30 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.41 5.13 8.40 -34.47 -0.29 4.84 16 37 H 0.12 1.91 8.13 -51.93 -0.42 1.49 16 38 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 39 H 0.03 0.63 5.45 -51.93 -0.28 0.35 16 40 H 0.10 2.51 6.07 -51.93 -0.32 2.19 16 41 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.10 2.48 6.07 -51.93 -0.32 2.16 16 44 H 0.03 0.63 5.48 -51.93 -0.28 0.35 16 45 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 366.23 15.07 5.52 5.52 Total: -1.00 -31.13 366.23 -10.11 -41.24 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -6.45 Total: 9.01 kcal Atomic # 6 Polarization: -31.82 SS G_CDS: -2.18 Total: -34.00 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.50 Total: -38.23 kcal Atomic # 8 Polarization: -42.11 SS G_CDS: -2.01 Total: -44.12 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 45.82 SS G_CDS: -0.47 Total: 45.35 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.13 -10.11 -41.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451555911.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.427 kcal (2) G-P(sol) polarization free energy of solvation -31.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds