Wall clock time and date at job start Tue Mar 31 2020 22:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47047 * 2 1 4 4 C 1.53007 * 109.46650 * 119.99731 * 2 1 3 5 5 S 1.81402 * 109.47083 * 65.00508 * 4 2 1 6 6 O 1.42101 * 108.57832 * 65.50680 * 5 4 2 7 7 O 1.42099 * 108.57406 * 294.48416 * 5 4 2 8 8 C 1.81395 * 101.92023 * 179.97438 * 5 4 2 9 9 C 1.52996 * 109.47332 * 179.97438 * 8 5 4 10 10 C 1.50699 * 109.47602 * 180.02562 * 9 8 5 11 11 O 1.21286 * 119.99936 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00217 * 180.02562 * 10 9 8 13 13 C 1.39943 * 120.00142 * 174.88898 * 12 10 9 14 14 C 1.39287 * 119.94535 * 145.78087 * 13 12 10 15 15 C 1.38491 * 120.42528 * 179.97438 * 14 13 12 16 16 C 1.37679 * 120.32381 * 359.97438 * 15 14 13 17 17 C 1.40748 * 119.88500 * 0.02562 * 16 15 14 18 18 C 1.41410 * 120.20884 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99479 * 205.17834 * 18 17 16 20 20 C 1.39925 * 120.00126 * 25.17868 * 18 17 16 21 21 N 1.30839 * 120.00271 * 16.79548 * 20 18 17 22 22 Si 1.86799 * 120.00066 * 196.79538 * 20 18 17 23 23 H 1.48492 * 109.47286 * 94.96276 * 22 20 18 24 24 H 1.48506 * 109.47262 * 214.96375 * 22 20 18 25 25 H 1.48506 * 109.46958 * 334.95851 * 22 20 18 26 26 C 1.38246 * 119.94394 * 325.51381 * 13 12 10 27 27 H 1.09000 * 109.47402 * 60.00510 * 1 2 3 28 28 H 1.09005 * 109.47276 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47542 * 300.00253 * 1 2 3 30 30 H 1.08994 * 109.47590 * 239.99788 * 2 1 3 31 31 H 1.08999 * 109.46925 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46930 * 299.99618 * 3 2 1 33 33 H 1.09003 * 109.46965 * 60.00272 * 3 2 1 34 34 H 1.08993 * 109.47495 * 305.00040 * 4 2 1 35 35 H 1.09000 * 109.46443 * 184.99835 * 4 2 1 36 36 H 1.09002 * 109.47283 * 59.99855 * 8 5 4 37 37 H 1.09006 * 109.47137 * 299.99919 * 8 5 4 38 38 H 1.09006 * 109.47223 * 300.00209 * 9 8 5 39 39 H 1.09002 * 109.46775 * 59.99887 * 9 8 5 40 40 H 0.97005 * 119.99878 * 354.89041 * 12 10 9 41 41 H 1.07994 * 119.79263 * 359.97438 * 14 13 12 42 42 H 1.08000 * 119.83866 * 180.02562 * 15 14 13 43 43 H 1.07998 * 120.06026 * 180.02562 * 16 15 14 44 44 H 0.96988 * 120.00258 * 180.02562 * 21 20 18 45 45 H 1.07992 * 120.16132 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 16 1.5600 -2.4691 1.1767 6 8 2.2381 -3.0799 0.0874 7 8 0.1432 -2.5529 1.2468 8 6 2.2549 -3.1131 2.7236 9 6 1.9432 -4.6064 2.8401 10 6 2.5199 -5.1413 4.1255 11 8 3.1216 -4.4011 4.8745 12 7 2.3680 -6.4424 4.4423 13 6 2.9934 -6.9630 5.5808 14 6 2.3697 -7.9657 6.3195 15 6 2.9799 -8.4884 7.4476 16 6 4.2110 -8.0225 7.8510 17 6 4.8533 -7.0096 7.1144 18 6 6.1176 -6.5255 7.5229 19 1 6.4285 -5.5284 7.2482 20 6 6.9658 -7.3385 8.2829 21 7 6.7559 -8.6286 8.3417 22 14 8.3979 -6.5819 9.2134 23 1 7.9882 -6.3067 10.6139 24 1 9.5447 -7.5254 9.2095 25 1 8.7996 -5.3120 8.5565 26 6 4.2318 -6.4852 5.9673 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.1299 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6053 -0.2618 2.1370 35 1 3.1262 -0.6443 1.2952 36 1 1.8143 -2.5833 3.5682 37 1 3.3350 -2.9658 2.7258 38 1 0.8631 -4.7533 2.8380 39 1 2.3835 -5.1364 1.9955 40 1 1.8252 -7.0181 3.8811 41 1 1.4041 -8.3380 6.0107 42 1 2.4879 -9.2660 8.0131 43 1 4.6831 -8.4334 8.7311 44 1 7.3437 -9.1920 8.8688 45 1 4.7182 -5.7111 5.3924 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000456737529.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:29 Heat of formation + Delta-G solvation = -102.153582 kcal Electronic energy + Delta-G solvation = -26388.543438 eV Core-core repulsion = 22497.664061 eV Total energy + Delta-G solvation = -3890.879377 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -39.82557 -37.29957 -37.28532 -36.86588 -36.15598 -34.55119 -33.34474 -32.98567 -29.85641 -28.65088 -28.21395 -27.58530 -25.41764 -25.03106 -21.58682 -20.95610 -20.73625 -19.63902 -19.14741 -17.84709 -17.57632 -16.78552 -16.47607 -16.01257 -15.66685 -15.53916 -15.10088 -15.02500 -14.62046 -14.37115 -13.88766 -13.73794 -13.62236 -13.04150 -12.95120 -12.90247 -12.72938 -12.58387 -12.47287 -12.23790 -12.19588 -11.83416 -11.72671 -11.65221 -11.45791 -11.30924 -11.21502 -11.16377 -11.13281 -10.95281 -10.48522 -10.48113 -10.22208 -9.70268 -9.48230 -9.11780 -9.02834 -7.48669 -6.96655 -6.74200 -4.36803 -0.33512 2.44451 2.50327 2.80081 3.07676 3.12443 3.15623 3.17352 3.31104 3.61590 3.71940 3.94308 4.06249 4.21820 4.25522 4.52042 4.56340 4.62663 4.83957 4.87274 5.04713 5.11493 5.23009 5.23449 5.30092 5.41427 5.48658 5.57070 5.64311 5.69040 5.78038 5.92973 6.21707 6.36040 6.69763 6.97833 7.00701 7.03398 7.22394 7.50933 7.68422 7.93567 8.05468 8.12420 8.20989 8.56416 8.67545 8.90761 8.95237 10.19208 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017591 B = 0.002225 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.377988 B =12583.049924 C =13805.316490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.083 4.083 3 C -0.141 4.141 4 C -0.608 4.608 5 S 2.415 3.585 6 O -0.937 6.937 7 O -0.934 6.934 8 C -0.594 4.594 9 C -0.133 4.133 10 C 0.512 3.488 11 O -0.515 6.515 12 N -0.667 5.667 13 C 0.149 3.851 14 C -0.260 4.260 15 C -0.092 4.092 16 C -0.171 4.171 17 C 0.119 3.881 18 C -0.458 4.458 19 H 0.078 0.922 20 C 0.075 3.925 21 N -0.795 5.795 22 Si 0.909 3.091 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.262 1.262 26 C -0.211 4.211 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.135 0.865 35 H 0.135 0.865 36 H 0.141 0.859 37 H 0.141 0.859 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.400 0.600 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.119 0.881 44 H 0.280 0.720 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.344 13.256 -13.793 21.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.103 4.103 3 C -0.200 4.200 4 C -0.738 4.738 5 S 2.599 3.401 6 O -0.934 6.934 7 O -0.931 6.931 8 C -0.724 4.724 9 C -0.174 4.174 10 C 0.296 3.704 11 O -0.390 6.390 12 N -0.310 5.310 13 C 0.058 3.942 14 C -0.282 4.282 15 C -0.111 4.111 16 C -0.191 4.191 17 C 0.116 3.884 18 C -0.488 4.488 19 H 0.096 0.904 20 C -0.142 4.142 21 N -0.420 5.420 22 Si 0.734 3.266 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.186 1.186 26 C -0.232 4.232 27 H 0.085 0.915 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.153 0.847 35 H 0.153 0.847 36 H 0.159 0.841 37 H 0.160 0.840 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.234 0.766 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.137 0.863 44 H 0.091 0.909 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.269 13.147 -13.851 21.227 hybrid contribution 0.915 0.333 0.878 1.311 sum -8.354 13.480 -12.973 20.489 Atomic orbital electron populations 1.22366 0.93784 1.04815 1.03078 1.20848 0.96817 0.97763 0.94859 1.21813 1.01290 0.94475 1.02395 1.30397 1.12205 1.23550 1.07605 1.08159 0.76246 0.78260 0.77480 1.93597 1.76165 1.74130 1.49537 1.93568 1.27338 1.85679 1.86557 1.30116 1.14819 1.05354 1.22065 1.21349 1.03973 0.93053 0.99040 1.20164 0.80789 0.82264 0.87160 1.90750 1.40638 1.56836 1.50727 1.43438 1.50779 1.09681 1.27145 1.17440 0.92436 0.96745 0.87618 1.20050 1.00874 1.05978 1.01272 1.20473 0.95875 0.98816 0.95950 1.21361 0.94342 1.01633 1.01718 1.17501 0.92112 0.90082 0.88718 1.19586 0.99737 1.00909 1.28533 0.90368 1.25910 0.99066 0.94337 0.94920 1.69826 1.35915 1.04474 1.31802 0.86280 0.79962 0.80038 0.80329 1.19337 1.20295 1.18569 1.20957 0.95072 1.06755 1.00432 0.91533 0.89947 0.91620 0.89614 0.92210 0.91947 0.92170 0.84654 0.84671 0.84091 0.84048 0.87352 0.87235 0.76555 0.89204 0.88978 0.86274 0.90912 0.87669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 8.83 37.16 0.33 -1.00 16 2 C -0.08 -0.57 2.92 -90.62 -0.26 -0.83 16 3 C -0.14 -0.79 9.19 37.16 0.34 -0.45 16 4 C -0.61 -3.68 5.26 37.16 0.20 -3.48 16 5 S 2.41 20.82 4.51 -107.50 -0.49 20.33 16 6 O -0.94 -11.10 18.10 -57.83 -1.05 -12.15 16 7 O -0.93 -10.26 15.46 -57.83 -0.89 -11.15 16 8 C -0.59 -5.58 5.09 37.16 0.19 -5.39 16 9 C -0.13 -1.49 5.71 -27.89 -0.16 -1.65 16 10 C 0.51 8.55 7.56 -10.99 -0.08 8.47 16 11 O -0.51 -10.73 13.73 5.55 0.08 -10.65 16 12 N -0.67 -11.51 5.34 -9.91 -0.05 -11.56 16 13 C 0.15 3.34 6.25 -83.76 -0.52 2.81 16 14 C -0.26 -5.69 9.97 -39.10 -0.39 -6.08 16 15 C -0.09 -2.14 10.02 -39.69 -0.40 -2.54 16 16 C -0.17 -4.47 8.69 -38.84 -0.34 -4.80 16 17 C 0.12 3.25 5.57 -106.85 -0.59 2.66 16 18 C -0.46 -12.48 9.05 -37.74 -0.34 -12.82 16 19 H 0.08 2.10 7.90 -52.49 -0.41 1.68 16 20 C 0.08 1.91 5.16 -17.34 -0.09 1.82 16 21 N -0.79 -20.59 10.94 55.55 0.61 -19.98 16 22 Si 0.91 18.95 29.59 -169.99 -5.03 13.92 16 23 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 24 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 25 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 26 C -0.21 -5.41 8.39 -38.68 -0.32 -5.73 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.72 5.41 -51.93 -0.28 0.44 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.14 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.13 0.58 8.14 -51.92 -0.42 0.16 16 36 H 0.14 1.19 8.10 -51.92 -0.42 0.77 16 37 H 0.14 1.25 8.10 -51.92 -0.42 0.83 16 38 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.40 5.23 8.82 -40.82 -0.36 4.87 16 41 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 43 H 0.12 3.19 6.16 -52.49 -0.32 2.87 16 44 H 0.28 6.57 8.30 -40.82 -0.34 6.24 16 45 H 0.11 2.75 6.48 -52.49 -0.34 2.41 16 LS Contribution 383.45 15.07 5.78 5.78 Total: -1.00 -35.49 383.45 -10.27 -45.76 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -6.77 Total: 8.72 kcal Atomic # 6 Polarization: -26.56 SS G_CDS: -2.45 Total: -29.01 kcal Atomic # 7 Polarization: -32.10 SS G_CDS: 0.55 Total: -31.54 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -1.86 Total: -33.95 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.03 Total: 13.92 kcal Atomic # 16 Polarization: 20.82 SS G_CDS: -0.49 Total: 20.33 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.49 -10.27 -45.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456737529.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.397 kcal (2) G-P(sol) polarization free energy of solvation -35.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds