Wall clock time and date at job start Tue Mar 31 2020 22:05:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47047 * 2 1 4 4 C 1.53007 * 109.46650 * 119.99731 * 2 1 3 5 5 S 1.81402 * 109.47083 * 65.00508 * 4 2 1 6 6 O 1.42101 * 108.57832 * 65.50680 * 5 4 2 7 7 O 1.42099 * 108.57406 * 294.48416 * 5 4 2 8 8 C 1.81395 * 101.92023 * 179.97438 * 5 4 2 9 9 C 1.52996 * 109.47332 * 179.97438 * 8 5 4 10 10 C 1.50699 * 109.47602 * 180.02562 * 9 8 5 11 11 O 1.21286 * 119.99936 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00217 * 180.02562 * 10 9 8 13 13 C 1.39943 * 120.00142 * 174.88898 * 12 10 9 14 14 C 1.39287 * 119.94535 * 145.78087 * 13 12 10 15 15 C 1.38491 * 120.42528 * 179.97438 * 14 13 12 16 16 C 1.37679 * 120.32381 * 359.97438 * 15 14 13 17 17 C 1.40748 * 119.88500 * 0.02562 * 16 15 14 18 18 C 1.41410 * 120.20884 * 179.97438 * 17 16 15 19 19 H 1.08000 * 119.99479 * 205.17834 * 18 17 16 20 20 C 1.39925 * 120.00126 * 25.17868 * 18 17 16 21 21 N 1.30839 * 120.00271 * 16.79548 * 20 18 17 22 22 Si 1.86799 * 120.00066 * 196.79538 * 20 18 17 23 23 H 1.48492 * 109.47286 * 94.96276 * 22 20 18 24 24 H 1.48506 * 109.47262 * 214.96375 * 22 20 18 25 25 H 1.48506 * 109.46958 * 334.95851 * 22 20 18 26 26 C 1.38246 * 119.94394 * 325.51381 * 13 12 10 27 27 H 1.09000 * 109.47402 * 60.00510 * 1 2 3 28 28 H 1.09005 * 109.47276 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47542 * 300.00253 * 1 2 3 30 30 H 1.08994 * 109.47590 * 239.99788 * 2 1 3 31 31 H 1.08999 * 109.46925 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46930 * 299.99618 * 3 2 1 33 33 H 1.09003 * 109.46965 * 60.00272 * 3 2 1 34 34 H 1.08993 * 109.47495 * 305.00040 * 4 2 1 35 35 H 1.09000 * 109.46443 * 184.99835 * 4 2 1 36 36 H 1.09002 * 109.47283 * 59.99855 * 8 5 4 37 37 H 1.09006 * 109.47137 * 299.99919 * 8 5 4 38 38 H 1.09006 * 109.47223 * 300.00209 * 9 8 5 39 39 H 1.09002 * 109.46775 * 59.99887 * 9 8 5 40 40 H 0.97005 * 119.99878 * 354.89041 * 12 10 9 41 41 H 1.07994 * 119.79263 * 359.97438 * 14 13 12 42 42 H 1.08000 * 119.83866 * 180.02562 * 15 14 13 43 43 H 1.07998 * 120.06026 * 180.02562 * 16 15 14 44 44 H 0.96988 * 120.00258 * 180.02562 * 21 20 18 45 45 H 1.07992 * 120.16132 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 16 1.5600 -2.4691 1.1767 6 8 2.2381 -3.0799 0.0874 7 8 0.1432 -2.5529 1.2468 8 6 2.2549 -3.1131 2.7236 9 6 1.9432 -4.6064 2.8401 10 6 2.5199 -5.1413 4.1255 11 8 3.1216 -4.4011 4.8745 12 7 2.3680 -6.4424 4.4423 13 6 2.9934 -6.9630 5.5808 14 6 2.3697 -7.9657 6.3195 15 6 2.9799 -8.4884 7.4476 16 6 4.2110 -8.0225 7.8510 17 6 4.8533 -7.0096 7.1144 18 6 6.1176 -6.5255 7.5229 19 1 6.4285 -5.5284 7.2482 20 6 6.9658 -7.3385 8.2829 21 7 6.7559 -8.6286 8.3417 22 14 8.3979 -6.5819 9.2134 23 1 7.9882 -6.3067 10.6139 24 1 9.5447 -7.5254 9.2095 25 1 8.7996 -5.3120 8.5565 26 6 4.2318 -6.4852 5.9673 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.1299 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6053 -0.2618 2.1370 35 1 3.1262 -0.6443 1.2952 36 1 1.8143 -2.5833 3.5682 37 1 3.3350 -2.9658 2.7258 38 1 0.8631 -4.7533 2.8380 39 1 2.3835 -5.1364 1.9955 40 1 1.8252 -7.0181 3.8811 41 1 1.4041 -8.3380 6.0107 42 1 2.4879 -9.2660 8.0131 43 1 4.6831 -8.4334 8.7311 44 1 7.3437 -9.1920 8.8688 45 1 4.7182 -5.7111 5.3924 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456737529.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:28 Heat of formation + Delta-G solvation = -126.438984 kcal Electronic energy + Delta-G solvation = -26389.596532 eV Core-core repulsion = 22497.664061 eV Total energy + Delta-G solvation = -3891.932471 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.29496 -39.06079 -38.05193 -37.45986 -36.86584 -36.25841 -34.87017 -34.20197 -31.77359 -30.12875 -28.95047 -28.06688 -27.29631 -26.16450 -23.17039 -22.67913 -21.48100 -21.05069 -19.86257 -19.54763 -18.65366 -17.61979 -17.49151 -17.32615 -16.90832 -16.72821 -16.56060 -16.40021 -15.71004 -15.38531 -15.15524 -14.82774 -14.59031 -14.54694 -14.20935 -13.95694 -13.63534 -13.52739 -13.43418 -13.17100 -13.04364 -13.03144 -12.99598 -12.93438 -12.79073 -12.50041 -12.42079 -12.19528 -11.99819 -11.97402 -11.93992 -11.74249 -11.53827 -11.20523 -11.11746 -10.90771 -10.68079 -9.42046 -8.78160 -8.62555 -6.38813 -1.01966 0.83127 0.97722 1.35661 1.46863 1.49539 1.74492 1.79416 2.14167 2.20310 2.64873 2.71935 3.07782 3.34388 3.54403 3.68942 3.72998 3.84146 3.86913 4.04491 4.34478 4.35557 4.45191 4.50689 4.57187 4.61457 4.67793 4.80938 4.84560 4.94183 5.00706 5.02885 5.07651 5.10563 5.20023 5.22025 5.31226 5.35767 5.39840 5.73247 5.83779 6.06236 6.09006 6.32157 6.59390 6.66515 6.91831 6.98932 7.26913 8.31790 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017591 B = 0.002225 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.377988 B =12583.049924 C =13805.316490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.092 4.092 3 C -0.142 4.142 4 C -0.596 4.596 5 S 2.433 3.567 6 O -0.972 6.972 7 O -0.959 6.959 8 C -0.601 4.601 9 C -0.133 4.133 10 C 0.507 3.493 11 O -0.560 6.560 12 N -0.660 5.660 13 C 0.156 3.844 14 C -0.251 4.251 15 C -0.092 4.092 16 C -0.198 4.198 17 C 0.088 3.912 18 C -0.501 4.501 19 H 0.064 0.936 20 C 0.036 3.964 21 N -0.822 5.822 22 Si 0.983 3.017 23 H -0.260 1.260 24 H -0.263 1.263 25 H -0.264 1.264 26 C -0.238 4.238 27 H 0.075 0.925 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.159 0.841 35 H 0.157 0.843 36 H 0.150 0.850 37 H 0.143 0.857 38 H 0.137 0.863 39 H 0.130 0.870 40 H 0.423 0.577 41 H 0.132 0.868 42 H 0.123 0.877 43 H 0.104 0.896 44 H 0.289 0.711 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.333 14.057 -14.420 22.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.112 4.112 3 C -0.200 4.200 4 C -0.728 4.728 5 S 2.619 3.381 6 O -0.969 6.969 7 O -0.956 6.956 8 C -0.729 4.729 9 C -0.173 4.173 10 C 0.295 3.705 11 O -0.438 6.438 12 N -0.306 5.306 13 C 0.063 3.937 14 C -0.273 4.273 15 C -0.110 4.110 16 C -0.218 4.218 17 C 0.085 3.915 18 C -0.530 4.530 19 H 0.082 0.918 20 C -0.179 4.179 21 N -0.448 5.448 22 Si 0.803 3.197 23 H -0.185 1.185 24 H -0.187 1.187 25 H -0.188 1.188 26 C -0.259 4.259 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.177 0.823 35 H 0.175 0.825 36 H 0.168 0.832 37 H 0.162 0.838 38 H 0.155 0.845 39 H 0.148 0.852 40 H 0.261 0.739 41 H 0.150 0.850 42 H 0.140 0.860 43 H 0.122 0.878 44 H 0.100 0.900 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.308 13.888 -14.519 22.581 hybrid contribution 1.080 0.122 0.971 1.457 sum -9.228 14.010 -13.548 21.563 Atomic orbital electron populations 1.22422 0.94287 1.03943 1.03992 1.20954 0.96548 0.98710 0.94943 1.21832 1.01662 0.93453 1.03069 1.30314 1.13897 1.20062 1.08553 1.07544 0.75136 0.79184 0.76209 1.93550 1.76594 1.75959 1.50844 1.93535 1.28825 1.86632 1.86607 1.30205 1.15288 1.04392 1.23062 1.21480 1.05522 0.94205 0.96081 1.21147 0.79600 0.81520 0.88259 1.90736 1.42516 1.57894 1.52618 1.43404 1.50619 1.10528 1.26053 1.17534 0.91394 0.96016 0.88787 1.20494 1.01998 1.04736 1.00023 1.20846 0.94809 0.98914 0.96471 1.21323 0.95957 1.02608 1.01931 1.17856 0.92810 0.91138 0.89724 1.19741 1.01006 1.00993 1.31279 0.91760 1.26722 1.01536 0.94574 0.95026 1.69859 1.37210 1.05506 1.32232 0.85191 0.76613 0.79079 0.78787 1.18462 1.18694 1.18755 1.20947 0.96938 1.07360 1.00681 0.90639 0.91642 0.90865 0.89990 0.91669 0.91364 0.91524 0.82292 0.82466 0.83222 0.83835 0.84474 0.85227 0.73855 0.85019 0.85958 0.87794 0.89990 0.89467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.46 8.83 71.98 0.64 -1.82 16 2 C -0.09 -1.07 2.92 -10.79 -0.03 -1.10 16 3 C -0.14 -1.23 9.19 71.98 0.66 -0.57 16 4 C -0.60 -5.77 5.26 71.98 0.38 -5.40 16 5 S 2.43 38.39 4.51 -56.49 -0.25 38.13 16 6 O -0.97 -22.15 18.10 -127.37 -2.30 -24.45 16 7 O -0.96 -19.82 15.46 -127.37 -1.97 -21.79 16 8 C -0.60 -10.40 5.09 71.98 0.37 -10.04 16 9 C -0.13 -2.72 5.71 29.85 0.17 -2.55 16 10 C 0.51 16.54 7.56 87.66 0.66 17.20 16 11 O -0.56 -23.71 13.73 -3.05 -0.04 -23.75 16 12 N -0.66 -21.82 5.34 -303.65 -1.62 -23.44 16 13 C 0.16 6.91 6.25 38.10 0.24 7.14 16 14 C -0.25 -10.47 9.97 22.58 0.23 -10.25 16 15 C -0.09 -4.18 10.02 22.20 0.22 -3.95 16 16 C -0.20 -10.66 8.69 22.75 0.20 -10.46 16 17 C 0.09 5.01 5.57 -21.31 -0.12 4.89 16 18 C -0.50 -28.79 9.05 23.46 0.21 -28.58 16 19 H 0.06 3.70 7.90 -2.91 -0.02 3.68 16 20 C 0.04 1.90 5.16 85.25 0.44 2.34 16 21 N -0.82 -43.78 10.94 21.82 0.24 -43.54 16 22 Si 0.98 39.68 29.59 68.60 2.03 41.71 16 23 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 24 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 25 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 26 C -0.24 -12.66 8.39 22.85 0.19 -12.47 16 27 H 0.07 0.80 8.14 -2.39 -0.02 0.79 16 28 H 0.06 1.09 5.41 -2.38 -0.01 1.08 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.16 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.16 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.15 2.31 8.10 -2.39 -0.02 2.29 16 37 H 0.14 2.42 8.10 -2.39 -0.02 2.40 16 38 H 0.14 2.04 8.14 -2.38 -0.02 2.02 16 39 H 0.13 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.42 9.90 8.82 -92.70 -0.82 9.08 16 41 H 0.13 4.37 8.06 -2.91 -0.02 4.34 16 42 H 0.12 4.74 8.06 -2.91 -0.02 4.71 16 43 H 0.10 5.80 6.16 -2.91 -0.02 5.78 16 44 H 0.29 13.79 8.30 -92.72 -0.77 13.02 16 45 H 0.09 4.84 6.48 -2.91 -0.02 4.82 16 Total: -1.00 -80.78 383.45 0.71 -80.07 By element: Atomic # 1 Polarization: 32.48 SS G_CDS: 0.18 Total: 32.66 kcal Atomic # 6 Polarization: -60.06 SS G_CDS: 4.45 Total: -55.61 kcal Atomic # 7 Polarization: -65.59 SS G_CDS: -1.38 Total: -66.97 kcal Atomic # 8 Polarization: -65.68 SS G_CDS: -4.32 Total: -69.99 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Atomic # 16 Polarization: 38.39 SS G_CDS: -0.25 Total: 38.13 kcal Total: -80.78 0.71 -80.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456737529.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.366 kcal (2) G-P(sol) polarization free energy of solvation -80.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds