Wall clock time and date at job start Wed Apr 1 2020 00:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 113.99665 * 2 1 4 4 C 1.53009 * 109.46662 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47054 * 65.00181 * 4 3 2 6 6 C 1.37102 * 119.99758 * 89.99532 * 5 4 3 7 7 H 1.07999 * 119.99923 * 305.68491 * 6 5 4 8 8 C 1.38952 * 119.99615 * 125.68594 * 6 5 4 9 9 N 1.31413 * 119.99919 * 343.53061 * 8 6 5 10 10 Si 1.86800 * 119.99876 * 163.53529 * 8 6 5 11 11 H 1.48500 * 109.46544 * 269.99713 * 10 8 6 12 12 H 1.48500 * 109.47245 * 29.99804 * 10 8 6 13 13 H 1.48499 * 109.46917 * 150.00139 * 10 8 6 14 14 C 1.34769 * 120.00083 * 270.00085 * 5 4 3 15 15 O 1.21302 * 119.99879 * 354.73998 * 14 5 4 16 16 C 1.50699 * 120.00110 * 174.74658 * 14 5 4 17 17 H 1.08993 * 109.47103 * 36.61004 * 16 14 5 18 18 C 1.53001 * 109.46802 * 276.61107 * 16 14 5 19 19 C 1.52999 * 109.47179 * 156.61488 * 16 14 5 20 20 H 1.08998 * 109.68933 * 305.53706 * 19 16 14 21 21 O 1.43017 * 109.69126 * 66.10936 * 19 16 14 22 22 C 1.43103 * 114.22642 * 171.78044 * 21 19 16 23 23 C 1.53438 * 109.04825 * 288.69537 * 22 21 19 24 24 C 1.51406 * 107.89591 * 47.51330 * 23 22 21 25 25 S 1.75519 * 126.26717 * 164.41418 * 24 23 22 26 26 C 1.75822 * 91.03082 * 180.02562 * 25 24 23 27 27 C 1.33067 * 109.61120 * 359.97438 * 26 25 24 28 28 C 1.34878 * 123.68532 * 344.45944 * 24 23 22 29 29 H 1.08999 * 109.47195 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47060 * 300.00103 * 1 2 3 31 31 H 1.08997 * 109.47267 * 59.99822 * 1 2 3 32 32 H 1.09001 * 109.47172 * 60.00247 * 3 2 1 33 33 H 1.08992 * 109.47547 * 299.99636 * 3 2 1 34 34 H 1.08998 * 109.47400 * 305.00126 * 4 3 2 35 35 H 1.09005 * 109.46855 * 185.00030 * 4 3 2 36 36 H 0.96996 * 119.99843 * 175.21524 * 9 8 6 37 37 H 1.08997 * 109.47185 * 65.53563 * 18 16 14 38 38 H 1.08997 * 109.47184 * 185.53232 * 18 16 14 39 39 H 1.08998 * 109.47172 * 305.53676 * 18 16 14 40 40 H 1.08993 * 109.53089 * 168.83750 * 22 21 19 41 41 H 1.08998 * 109.63959 * 48.61610 * 22 21 19 42 42 H 1.08999 * 109.77452 * 287.91813 * 23 22 21 43 43 H 1.08996 * 109.77864 * 167.11555 * 23 22 21 44 44 H 1.07994 * 125.19238 * 179.97438 * 26 25 24 45 45 H 1.08003 * 122.17982 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.2682 1.3463 -2.3385 7 1 3.5379 2.0508 -2.7082 8 6 5.5033 1.2326 -2.9649 9 7 6.4994 0.6352 -2.3501 10 14 5.7478 1.9291 -4.6809 11 1 5.4194 0.8889 -5.6885 12 1 4.8564 3.1014 -4.8710 13 1 7.1621 2.3503 -4.8472 14 6 4.0959 -0.7759 -1.3332 15 8 3.9307 -1.4612 -0.3461 16 6 4.4345 -1.4227 -2.6516 17 1 5.1358 -0.7910 -3.1966 18 6 3.1579 -1.5973 -3.4766 19 6 5.0702 -2.7914 -2.3998 20 1 5.9240 -2.6823 -1.7311 21 8 4.1063 -3.6696 -1.8123 22 6 4.5393 -5.0294 -1.7052 23 6 4.5789 -5.6541 -3.1061 24 6 5.2975 -4.6894 -4.0256 25 16 5.9495 -5.0584 -5.6128 26 6 6.5176 -3.4049 -5.7988 27 6 6.2029 -2.7000 -4.7150 28 6 5.5270 -3.3958 -3.7208 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.8508 0.5685 0.8427 35 1 3.9785 2.1766 0.0902 36 1 7.3401 0.4941 -2.8128 37 1 2.7583 -0.6179 -3.7396 38 1 3.3863 -2.1526 -4.3863 39 1 2.4195 -2.1459 -2.8919 40 1 3.8427 -5.5853 -1.0778 41 1 5.5349 -5.0631 -1.2629 42 1 3.5631 -5.8186 -3.4654 43 1 5.1168 -6.6015 -3.0724 44 1 7.0418 -3.0202 -6.6611 45 1 6.4578 -1.6553 -4.6143 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457200191.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:47 Heat of formation + Delta-G solvation = -79.508799 kcal Electronic energy + Delta-G solvation = -29579.733423 eV Core-core repulsion = 25689.835997 eV Total energy + Delta-G solvation = -3889.897426 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.71667 -38.30103 -36.92199 -36.04746 -34.39668 -33.30966 -31.88833 -31.24553 -29.00130 -28.15805 -25.78548 -25.34796 -24.70689 -23.95355 -22.74131 -21.47162 -20.82662 -19.10069 -17.72942 -17.13016 -16.87990 -15.99782 -15.69371 -15.61212 -15.03226 -14.89860 -14.60784 -14.36628 -14.29041 -14.24130 -13.80889 -13.29067 -13.21141 -12.93512 -12.55028 -12.15668 -12.02274 -11.87333 -11.83327 -11.66261 -11.59353 -11.26466 -11.19298 -11.07425 -10.98909 -10.81394 -10.71825 -10.55324 -10.36834 -10.26187 -10.06588 -9.97750 -9.03092 -9.01169 -8.69791 -8.30577 -8.02739 -7.89740 -7.16877 -6.36079 -4.21320 1.23177 1.85183 2.20072 2.99118 3.09548 3.19074 3.20135 4.06610 4.26548 4.43783 4.53265 4.87103 4.91137 4.97389 5.16335 5.23941 5.43794 5.48368 5.63429 5.69936 5.72438 5.83924 5.90993 5.95023 5.99461 6.00293 6.04409 6.06506 6.13580 6.17755 6.30839 6.39246 6.51638 6.59723 6.63551 6.67302 6.83614 6.85850 7.01289 7.07323 7.28727 7.43894 7.84611 7.86203 8.06389 8.75395 8.98231 9.76888 10.23579 10.66415 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011048 B = 0.005538 C = 0.004106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2533.683006 B = 5054.883152 C = 6818.137764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.364 6.364 3 C 0.049 3.951 4 C 0.117 3.883 5 N -0.463 5.463 6 C -0.332 4.332 7 H 0.076 0.924 8 C 0.049 3.951 9 N -0.858 5.858 10 Si 0.892 3.108 11 H -0.270 1.270 12 H -0.267 1.267 13 H -0.282 1.282 14 C 0.538 3.462 15 O -0.574 6.574 16 C -0.086 4.086 17 H 0.128 0.872 18 C -0.123 4.123 19 C 0.177 3.823 20 H 0.071 0.929 21 O -0.343 6.343 22 C 0.063 3.937 23 C -0.078 4.078 24 C -0.182 4.182 25 S 0.070 5.930 26 C -0.219 4.219 27 C -0.107 4.107 28 C -0.119 4.119 29 H 0.077 0.923 30 H 0.029 0.971 31 H 0.032 0.968 32 H 0.038 0.962 33 H 0.045 0.955 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.269 0.731 37 H 0.058 0.942 38 H 0.043 0.957 39 H 0.054 0.946 40 H 0.095 0.905 41 H 0.049 0.951 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.162 0.838 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.044 -6.687 -4.037 8.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.282 6.282 3 C -0.029 4.029 4 C -0.007 4.007 5 N -0.185 5.185 6 C -0.461 4.461 7 H 0.093 0.907 8 C -0.156 4.156 9 N -0.494 5.494 10 Si 0.717 3.283 11 H -0.195 1.195 12 H -0.191 1.191 13 H -0.207 1.207 14 C 0.327 3.673 15 O -0.456 6.456 16 C -0.107 4.107 17 H 0.146 0.854 18 C -0.180 4.180 19 C 0.116 3.884 20 H 0.089 0.911 21 O -0.261 6.261 22 C -0.016 4.016 23 C -0.118 4.118 24 C -0.299 4.299 25 S 0.335 5.665 26 C -0.354 4.354 27 C -0.138 4.138 28 C -0.131 4.131 29 H 0.096 0.904 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.113 0.887 41 H 0.068 0.932 42 H 0.102 0.898 43 H 0.098 0.902 44 H 0.179 0.821 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.888 -8.398 -4.419 9.919 hybrid contribution 0.398 1.948 -0.420 2.032 sum -2.490 -6.451 -4.839 8.439 Atomic orbital electron populations 1.22630 0.83223 1.01834 0.98737 1.88175 1.17565 1.27411 1.95019 1.23061 0.96446 0.84712 0.98643 1.21318 0.90220 0.98560 0.90599 1.43065 1.62165 1.03924 1.09349 1.19186 0.98008 1.22251 1.06648 0.90661 1.25522 0.94537 0.96346 0.99235 1.70057 1.02617 1.41494 1.35266 0.86482 0.77971 0.80191 0.83654 1.19539 1.19086 1.20725 1.19873 0.76447 0.82121 0.88903 1.90540 1.53595 1.63062 1.38355 1.21360 0.99590 0.92389 0.97383 0.85428 1.21450 0.97063 1.01254 0.98270 1.20870 0.91286 0.89193 0.87037 0.91103 1.88222 1.40456 1.16315 1.81066 1.22549 1.00388 0.84754 0.93932 1.20974 0.99739 0.96175 0.94880 1.24646 1.07873 0.98400 0.98944 1.83756 1.56373 1.11853 1.14496 1.25309 1.10005 0.96390 1.03657 1.20044 0.99388 1.01623 0.92701 1.20449 1.00659 0.92969 0.99023 0.90413 0.95197 0.94947 0.94411 0.93698 0.91299 0.90446 0.92071 0.92265 0.93798 0.92701 0.88659 0.93221 0.89786 0.90242 0.82053 0.84083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.36 -7.66 9.72 -36.15 -0.35 -8.01 16 3 C 0.05 0.95 6.28 37.16 0.23 1.19 16 4 C 0.12 2.60 5.85 -4.03 -0.02 2.58 16 5 N -0.46 -11.53 2.39 -114.80 -0.27 -11.81 16 6 C -0.33 -8.19 8.47 -14.93 -0.13 -8.32 16 7 H 0.08 1.82 7.88 -52.49 -0.41 1.40 16 8 C 0.05 1.19 3.24 -17.47 -0.06 1.13 16 9 N -0.86 -21.88 11.92 55.50 0.66 -21.21 16 10 Si 0.89 18.61 29.57 -169.99 -5.03 13.58 16 11 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 12 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 13 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 14 C 0.54 13.87 5.68 -10.99 -0.06 13.81 16 15 O -0.57 -16.11 14.42 -16.14 -0.23 -16.34 16 16 C -0.09 -1.98 1.48 -91.77 -0.14 -2.12 16 17 H 0.13 3.04 3.18 -51.93 -0.17 2.88 16 18 C -0.12 -2.62 8.75 37.16 0.33 -2.29 16 19 C 0.18 3.79 2.36 -27.10 -0.06 3.72 16 20 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 21 O -0.34 -7.20 8.45 -53.78 -0.45 -7.65 16 22 C 0.06 1.00 6.83 37.38 0.26 1.26 16 23 C -0.08 -1.09 6.55 -27.31 -0.18 -1.27 16 24 C -0.18 -2.96 6.44 -35.15 -0.23 -3.19 16 25 S 0.07 0.98 23.32 -107.50 -2.51 -1.53 16 26 C -0.22 -3.29 11.21 28.93 0.32 -2.96 16 27 C -0.11 -1.91 9.44 -41.13 -0.39 -2.30 16 28 C -0.12 -2.21 4.36 -104.78 -0.46 -2.67 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 1.63 7.36 -51.93 -0.38 1.25 16 35 H 0.08 1.60 8.04 -51.93 -0.42 1.18 16 36 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 37 H 0.06 1.26 7.91 -51.93 -0.41 0.85 16 38 H 0.04 0.86 7.22 -51.93 -0.37 0.49 16 39 H 0.05 1.20 7.74 -51.93 -0.40 0.80 16 40 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 41 H 0.05 0.77 8.09 -51.93 -0.42 0.35 16 42 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.16 1.99 8.06 -52.49 -0.42 1.57 16 45 H 0.14 2.64 7.27 -52.48 -0.38 2.26 16 LS Contribution 373.38 15.07 5.63 5.63 Total: -1.00 -30.28 373.38 -8.76 -39.03 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -6.73 Total: 8.09 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: 0.53 Total: 0.22 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: 0.39 Total: -33.02 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -1.04 Total: -32.00 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.51 Total: -1.53 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.28 -8.76 -39.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457200191.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.475 kcal (2) G-P(sol) polarization free energy of solvation -30.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds