Wall clock time and date at job start Tue Mar 31 2020 22:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46968 * 2 1 4 4 N 1.46500 * 109.47153 * 120.00345 * 2 1 3 5 5 C 1.46500 * 120.00064 * 121.61104 * 4 2 1 6 6 C 1.50691 * 109.47140 * 269.99945 * 5 4 2 7 7 H 1.08001 * 120.00175 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00208 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99825 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00517 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46689 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47342 * 119.99607 * 10 8 6 13 13 H 1.48499 * 109.47214 * 239.99961 * 10 8 6 14 14 C 1.34774 * 119.99679 * 301.61089 * 4 2 1 15 15 O 1.21556 * 119.99891 * 212.31232 * 14 4 2 16 16 C 1.47850 * 120.00050 * 32.31630 * 14 4 2 17 17 C 1.39578 * 120.13996 * 137.49753 * 16 14 4 18 18 C 1.37961 * 119.84807 * 180.27402 * 17 16 14 19 19 C 1.38357 * 120.14537 * 359.49475 * 18 17 16 20 20 C 1.50698 * 119.85401 * 180.25376 * 19 18 17 21 21 S 1.81399 * 109.47339 * 270.24846 * 20 19 18 22 22 C 1.81400 * 101.92059 * 179.97438 * 21 20 19 23 23 O 1.42099 * 108.57768 * 294.48926 * 21 20 19 24 24 O 1.42108 * 108.57494 * 65.51174 * 21 20 19 25 25 C 1.38357 * 120.29114 * 0.50378 * 19 18 17 26 26 C 1.37962 * 120.14763 * 359.75016 * 25 19 18 27 27 H 1.08994 * 109.47006 * 253.47898 * 1 2 3 28 28 H 1.09000 * 109.46826 * 13.48340 * 1 2 3 29 29 H 1.09000 * 109.46716 * 133.47941 * 1 2 3 30 30 H 1.09000 * 109.47134 * 240.00475 * 2 1 3 31 31 H 1.09005 * 109.47113 * 223.64555 * 3 2 1 32 32 H 1.08996 * 109.47390 * 343.64668 * 3 2 1 33 33 H 1.09005 * 109.46761 * 103.65034 * 3 2 1 34 34 H 1.09002 * 109.46681 * 29.99939 * 5 4 2 35 35 H 1.09001 * 109.46824 * 149.99748 * 5 4 2 36 36 H 0.96995 * 119.99865 * 180.02562 * 9 8 6 37 37 H 1.07997 * 120.07776 * 359.97438 * 17 16 14 38 38 H 1.08002 * 119.92481 * 179.72341 * 18 17 16 39 39 H 1.09000 * 109.47019 * 30.25387 * 20 19 18 40 40 H 1.09005 * 109.47165 * 150.24772 * 20 19 18 41 41 H 1.09001 * 109.47124 * 60.00734 * 22 21 20 42 42 H 1.09007 * 109.46702 * 180.02562 * 22 21 20 43 43 H 1.09000 * 109.47156 * 299.99898 * 22 21 20 44 44 H 1.08008 * 119.92832 * 179.77271 * 25 19 18 45 45 H 1.07999 * 120.07145 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.8895 -1.8609 1.0619 6 6 2.0475 -3.1087 0.9928 7 1 0.9711 -3.0373 1.0442 8 6 2.6512 -4.3416 0.8651 9 7 3.9621 -4.4286 0.8031 10 14 1.6075 -5.8884 0.7787 11 1 0.1712 -5.5219 0.8688 12 1 1.8612 -6.5856 -0.5077 13 1 1.9602 -6.7873 1.9069 14 6 1.6662 -0.2495 2.4199 15 8 2.4358 -0.3677 3.3534 16 6 0.3437 0.3782 2.6272 17 6 -0.4120 0.0636 3.7578 18 6 -1.6477 0.6485 3.9423 19 6 -2.1337 1.5530 3.0150 20 6 -3.4820 2.1924 3.2260 21 16 -4.7650 1.1658 2.4575 22 6 -6.2704 2.1073 2.8289 23 8 -4.5644 1.1682 1.0508 24 8 -4.8256 -0.0749 3.1477 25 6 -1.3897 1.8692 1.8922 26 6 -0.1547 1.2875 1.6930 27 1 -0.3633 -0.2922 0.9852 28 1 -0.3633 0.9994 -0.2396 29 1 -0.3633 -0.7071 -0.7457 30 1 1.8934 -0.5138 -0.8900 31 1 2.8623 1.5372 -0.7093 32 1 1.2315 2.1138 -0.2893 33 1 2.3898 1.7042 0.9987 34 1 3.4811 -1.7708 0.1509 35 1 3.5552 -1.9189 1.9231 36 1 4.3868 -5.2959 0.7129 37 1 -0.0323 -0.6398 4.4840 38 1 -2.2354 0.4026 4.8144 39 1 -3.6789 2.2809 4.2944 40 1 -3.4892 3.1834 2.7720 41 1 -6.1960 3.1008 2.3868 42 1 -7.1349 1.5885 2.4143 43 1 -6.3852 2.1978 3.9091 44 1 -1.7763 2.5734 1.1702 45 1 0.4249 1.5349 0.8159 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522583912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:02 Heat of formation + Delta-G solvation = 4.860763 kcal Electronic energy + Delta-G solvation = -28254.338380 eV Core-core repulsion = 24368.099492 eV Total energy + Delta-G solvation = -3886.238887 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.01260 -38.22524 -37.20224 -36.49932 -36.21188 -33.78823 -32.70256 -31.74132 -30.33230 -30.07456 -28.22932 -27.03678 -26.58939 -23.48869 -22.99949 -21.73054 -21.61467 -19.14382 -18.53386 -17.14101 -16.95049 -16.53302 -16.41018 -16.24648 -15.86450 -15.59283 -14.88413 -14.84282 -14.36664 -14.10757 -14.00701 -13.77609 -13.62443 -13.59809 -13.12401 -12.96733 -12.75429 -12.33916 -12.27920 -12.24325 -12.19515 -12.08187 -11.85365 -11.65576 -11.37090 -11.21345 -11.05495 -11.02203 -10.82194 -10.68236 -10.56553 -10.15994 -10.09629 -9.61890 -9.16931 -8.76432 -8.45091 -8.15321 -7.58945 -6.05454 -4.11713 -0.43485 1.09808 1.49903 2.43306 3.13224 3.30321 3.36034 3.38277 3.43827 3.65314 3.76005 3.97836 4.17661 4.27178 4.38046 4.44034 4.65098 4.89492 4.94352 5.01382 5.06568 5.09027 5.20686 5.26922 5.28974 5.37871 5.52380 5.64495 5.74651 5.83647 5.90436 5.93169 6.05239 6.21196 6.29512 6.37418 6.42487 6.51654 6.62929 6.90995 7.10158 7.42132 7.59549 7.92607 8.21309 8.38409 8.78527 8.99008 9.54491 11.01798 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013238 B = 0.003522 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.619904 B = 7947.919683 C = 8845.049826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.136 3.864 3 C -0.179 4.179 4 N -0.607 5.607 5 C 0.248 3.752 6 C -0.533 4.533 7 H 0.060 0.940 8 C 0.062 3.938 9 N -0.893 5.893 10 Si 0.896 3.104 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.283 1.283 14 C 0.570 3.430 15 O -0.530 6.530 16 C -0.132 4.132 17 C -0.061 4.061 18 C -0.126 4.126 19 C -0.076 4.076 20 C -0.561 4.561 21 S 2.413 3.587 22 C -0.661 4.661 23 O -0.930 6.930 24 O -0.929 6.929 25 C -0.146 4.146 26 C -0.088 4.088 27 H 0.095 0.905 28 H 0.071 0.929 29 H 0.060 0.940 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.033 0.967 35 H 0.045 0.955 36 H 0.263 0.737 37 H 0.135 0.865 38 H 0.131 0.869 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.131 0.869 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.848 18.864 1.859 26.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.030 3.970 3 C -0.237 4.237 4 N -0.340 5.340 5 C 0.129 3.871 6 C -0.572 4.572 7 H 0.079 0.921 8 C -0.140 4.140 9 N -0.531 5.531 10 Si 0.724 3.276 11 H -0.196 1.196 12 H -0.209 1.209 13 H -0.209 1.209 14 C 0.357 3.643 15 O -0.406 6.406 16 C -0.136 4.136 17 C -0.079 4.079 18 C -0.145 4.145 19 C -0.078 4.078 20 C -0.688 4.688 21 S 2.595 3.405 22 C -0.810 4.810 23 O -0.927 6.927 24 O -0.926 6.926 25 C -0.165 4.165 26 C -0.105 4.105 27 H 0.113 0.887 28 H 0.090 0.910 29 H 0.079 0.921 30 H 0.116 0.884 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.158 0.842 40 H 0.158 0.842 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.146 0.854 44 H 0.149 0.851 45 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -17.214 17.855 1.868 24.872 hybrid contribution -0.852 -0.256 0.354 0.957 sum -18.066 17.598 2.222 25.318 Atomic orbital electron populations 1.23753 0.96101 1.01637 1.04424 1.21043 0.93559 0.92241 0.90112 1.22724 1.01536 0.96238 1.03207 1.48038 1.51244 1.31465 1.03212 1.19356 0.89162 0.80030 0.98509 1.21580 0.93696 0.91081 1.50878 0.92145 1.24943 0.94991 0.99071 0.94998 1.69952 1.08395 1.24943 1.49852 0.86464 0.80625 0.82892 0.77646 1.19621 1.20878 1.20856 1.18015 0.85265 0.77589 0.83400 1.90710 1.51863 1.55226 1.42837 1.20462 0.96917 0.99914 0.96327 1.21184 0.93209 0.97846 0.95709 1.20932 0.96337 0.97628 0.99584 1.18897 0.93558 0.98573 0.96741 1.29315 1.10756 1.14375 1.14398 1.08323 0.78207 0.77525 0.76442 1.30348 1.22434 1.16031 1.12181 1.93611 1.84457 1.86571 1.28026 1.93623 1.85598 1.37745 1.75682 1.20892 0.95344 1.02318 0.97899 1.23022 0.96721 0.92815 0.97905 0.88704 0.91035 0.92070 0.88354 0.91397 0.91244 0.91676 0.94866 0.93694 0.92720 0.84759 0.85146 0.84174 0.84157 0.85401 0.85268 0.85402 0.85145 0.80407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.10 7.72 37.16 0.29 -2.82 16 2 C 0.14 2.26 3.27 -67.93 -0.22 2.04 16 3 C -0.18 -2.34 8.36 37.16 0.31 -2.03 16 4 N -0.61 -13.14 2.38 -168.58 -0.40 -13.54 16 5 C 0.25 6.51 5.32 -5.20 -0.03 6.48 16 6 C -0.53 -15.06 9.39 -34.44 -0.32 -15.38 16 7 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.47 13.29 55.43 0.74 -25.73 16 10 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 C 0.57 12.43 5.87 -12.33 -0.07 12.36 16 15 O -0.53 -13.39 16.79 5.32 0.09 -13.30 16 16 C -0.13 -2.35 4.26 -104.97 -0.45 -2.79 16 17 C -0.06 -1.00 9.67 -39.18 -0.38 -1.38 16 18 C -0.13 -1.68 9.68 -39.64 -0.38 -2.06 16 19 C -0.08 -0.88 5.15 -104.53 -0.54 -1.42 16 20 C -0.56 -3.68 5.92 36.00 0.21 -3.46 16 21 S 2.41 19.93 5.34 -107.50 -0.57 19.36 16 22 C -0.66 -2.38 10.62 101.05 1.07 -1.31 16 23 O -0.93 -11.25 18.10 -57.83 -1.05 -12.30 16 24 O -0.93 -11.80 18.10 -57.83 -1.05 -12.84 16 25 C -0.15 -1.76 9.43 -39.64 -0.37 -2.13 16 26 C -0.09 -1.25 4.87 -39.19 -0.19 -1.44 16 27 H 0.09 1.66 3.99 -61.54 -0.25 1.41 16 28 H 0.07 0.85 5.24 -51.93 -0.27 0.58 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.10 1.66 7.81 -51.93 -0.41 1.26 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.69 6.18 -51.93 -0.32 0.37 16 33 H 0.06 0.95 6.82 -51.93 -0.35 0.59 16 34 H 0.03 0.88 7.93 -51.93 -0.41 0.47 16 35 H 0.05 1.33 7.36 -51.93 -0.38 0.94 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.13 2.25 8.06 -52.49 -0.42 1.82 16 38 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 39 H 0.14 0.52 8.08 -51.92 -0.42 0.10 16 40 H 0.14 0.47 8.08 -51.92 -0.42 0.05 16 41 H 0.13 0.19 8.14 -51.92 -0.42 -0.24 16 42 H 0.13 0.45 8.14 -51.92 -0.42 0.03 16 43 H 0.13 0.21 8.14 -51.92 -0.42 -0.21 16 44 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 45 H 0.18 2.28 1.07 -53.68 -0.06 2.22 16 LS Contribution 373.40 15.07 5.63 5.63 Total: -1.00 -39.16 373.40 -9.02 -48.18 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -6.22 Total: 1.26 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -1.17 Total: -13.67 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.34 Total: -39.27 kcal Atomic # 8 Polarization: -36.44 SS G_CDS: -2.00 Total: -38.44 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 19.93 SS G_CDS: -0.57 Total: 19.36 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -39.16 -9.02 -48.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522583912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.043 kcal (2) G-P(sol) polarization free energy of solvation -39.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds