Wall clock time and date at job start Tue Mar 31 2020 22:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46968 * 2 1 4 4 N 1.46500 * 109.47153 * 120.00345 * 2 1 3 5 5 C 1.46500 * 120.00064 * 121.61104 * 4 2 1 6 6 C 1.50691 * 109.47140 * 269.99945 * 5 4 2 7 7 H 1.08001 * 120.00175 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00208 * 180.02562 * 6 5 4 9 9 N 1.31522 * 119.99825 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00517 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.46689 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47342 * 119.99607 * 10 8 6 13 13 H 1.48499 * 109.47214 * 239.99961 * 10 8 6 14 14 C 1.34774 * 119.99679 * 301.61089 * 4 2 1 15 15 O 1.21556 * 119.99891 * 212.31232 * 14 4 2 16 16 C 1.47850 * 120.00050 * 32.31630 * 14 4 2 17 17 C 1.39578 * 120.13996 * 137.49753 * 16 14 4 18 18 C 1.37961 * 119.84807 * 180.27402 * 17 16 14 19 19 C 1.38357 * 120.14537 * 359.49475 * 18 17 16 20 20 C 1.50698 * 119.85401 * 180.25376 * 19 18 17 21 21 S 1.81399 * 109.47339 * 270.24846 * 20 19 18 22 22 C 1.81400 * 101.92059 * 179.97438 * 21 20 19 23 23 O 1.42099 * 108.57768 * 294.48926 * 21 20 19 24 24 O 1.42108 * 108.57494 * 65.51174 * 21 20 19 25 25 C 1.38357 * 120.29114 * 0.50378 * 19 18 17 26 26 C 1.37962 * 120.14763 * 359.75016 * 25 19 18 27 27 H 1.08994 * 109.47006 * 253.47898 * 1 2 3 28 28 H 1.09000 * 109.46826 * 13.48340 * 1 2 3 29 29 H 1.09000 * 109.46716 * 133.47941 * 1 2 3 30 30 H 1.09000 * 109.47134 * 240.00475 * 2 1 3 31 31 H 1.09005 * 109.47113 * 223.64555 * 3 2 1 32 32 H 1.08996 * 109.47390 * 343.64668 * 3 2 1 33 33 H 1.09005 * 109.46761 * 103.65034 * 3 2 1 34 34 H 1.09002 * 109.46681 * 29.99939 * 5 4 2 35 35 H 1.09001 * 109.46824 * 149.99748 * 5 4 2 36 36 H 0.96995 * 119.99865 * 180.02562 * 9 8 6 37 37 H 1.07997 * 120.07776 * 359.97438 * 17 16 14 38 38 H 1.08002 * 119.92481 * 179.72341 * 18 17 16 39 39 H 1.09000 * 109.47019 * 30.25387 * 20 19 18 40 40 H 1.09005 * 109.47165 * 150.24772 * 20 19 18 41 41 H 1.09001 * 109.47124 * 60.00734 * 22 21 20 42 42 H 1.09007 * 109.46702 * 180.02562 * 22 21 20 43 43 H 1.09000 * 109.47156 * 299.99898 * 22 21 20 44 44 H 1.08008 * 119.92832 * 179.77271 * 25 19 18 45 45 H 1.07999 * 120.07145 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.8895 -1.8609 1.0619 6 6 2.0475 -3.1087 0.9928 7 1 0.9711 -3.0373 1.0442 8 6 2.6512 -4.3416 0.8651 9 7 3.9621 -4.4286 0.8031 10 14 1.6075 -5.8884 0.7787 11 1 0.1712 -5.5219 0.8688 12 1 1.8612 -6.5856 -0.5077 13 1 1.9602 -6.7873 1.9069 14 6 1.6662 -0.2495 2.4199 15 8 2.4358 -0.3677 3.3534 16 6 0.3437 0.3782 2.6272 17 6 -0.4120 0.0636 3.7578 18 6 -1.6477 0.6485 3.9423 19 6 -2.1337 1.5530 3.0150 20 6 -3.4820 2.1924 3.2260 21 16 -4.7650 1.1658 2.4575 22 6 -6.2704 2.1073 2.8289 23 8 -4.5644 1.1682 1.0508 24 8 -4.8256 -0.0749 3.1477 25 6 -1.3897 1.8692 1.8922 26 6 -0.1547 1.2875 1.6930 27 1 -0.3633 -0.2922 0.9852 28 1 -0.3633 0.9994 -0.2396 29 1 -0.3633 -0.7071 -0.7457 30 1 1.8934 -0.5138 -0.8900 31 1 2.8623 1.5372 -0.7093 32 1 1.2315 2.1138 -0.2893 33 1 2.3898 1.7042 0.9987 34 1 3.4811 -1.7708 0.1509 35 1 3.5552 -1.9189 1.9231 36 1 4.3868 -5.2959 0.7129 37 1 -0.0323 -0.6398 4.4840 38 1 -2.2354 0.4026 4.8144 39 1 -3.6789 2.2809 4.2944 40 1 -3.4892 3.1834 2.7720 41 1 -6.1960 3.1008 2.3868 42 1 -7.1349 1.5885 2.4143 43 1 -6.3852 2.1978 3.9091 44 1 -1.7763 2.5734 1.1702 45 1 0.4249 1.5349 0.8159 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522583912.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:01 Heat of formation + Delta-G solvation = -24.896801 kcal Electronic energy + Delta-G solvation = -28255.628764 eV Core-core repulsion = 24368.099492 eV Total energy + Delta-G solvation = -3887.529272 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.34926 -39.58383 -38.02959 -37.91632 -36.92787 -35.55974 -34.13266 -33.27271 -31.55704 -30.44796 -29.60374 -28.42838 -27.91880 -25.23884 -24.28428 -23.16104 -22.87922 -19.94596 -19.75811 -18.71190 -18.30270 -17.61868 -17.55381 -17.33363 -16.92495 -16.56641 -16.44265 -16.40178 -15.71524 -15.43537 -15.33088 -14.92304 -14.55481 -14.21708 -13.99583 -13.85720 -13.83516 -13.71086 -13.55497 -13.41901 -13.22294 -13.10129 -13.00094 -12.95208 -12.92718 -12.76614 -12.48583 -12.21756 -12.15283 -12.14732 -11.86881 -11.70242 -11.52333 -11.25208 -10.88765 -10.69410 -9.83832 -9.44408 -9.23323 -8.26731 -6.43424 -1.02241 -0.00222 0.41891 1.33217 1.34773 1.47052 1.58865 1.94341 2.21132 2.37191 2.68968 2.84663 3.01634 3.16570 3.44024 3.63104 3.73520 3.81397 3.92829 4.08153 4.14624 4.17315 4.23923 4.36136 4.36892 4.55276 4.55539 4.63113 4.64668 4.82790 4.86264 4.97404 4.98194 5.02634 5.04380 5.13627 5.15667 5.23563 5.34552 5.38677 5.46611 5.55471 5.84963 5.87926 6.01306 6.63906 6.70233 7.11759 7.30670 8.79739 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013238 B = 0.003522 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.619904 B = 7947.919683 C = 8845.049826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.124 3.876 3 C -0.172 4.172 4 N -0.614 5.614 5 C 0.264 3.736 6 C -0.548 4.548 7 H 0.053 0.947 8 C 0.011 3.989 9 N -0.925 5.925 10 Si 0.966 3.034 11 H -0.270 1.270 12 H -0.266 1.266 13 H -0.278 1.278 14 C 0.563 3.437 15 O -0.586 6.586 16 C -0.165 4.165 17 C -0.086 4.086 18 C -0.133 4.133 19 C -0.068 4.068 20 C -0.555 4.555 21 S 2.401 3.599 22 C -0.632 4.632 23 O -0.979 6.979 24 O -0.990 6.990 25 C -0.143 4.143 26 C -0.083 4.083 27 H 0.075 0.925 28 H 0.116 0.884 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.115 0.885 33 H 0.046 0.954 34 H 0.024 0.976 35 H -0.002 1.002 36 H 0.269 0.731 37 H 0.110 0.890 38 H 0.152 0.848 39 H 0.176 0.824 40 H 0.187 0.813 41 H 0.162 0.838 42 H 0.133 0.867 43 H 0.156 0.844 44 H 0.175 0.825 45 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.163 22.132 1.009 31.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.021 3.979 3 C -0.229 4.229 4 N -0.345 5.345 5 C 0.143 3.857 6 C -0.587 4.587 7 H 0.071 0.929 8 C -0.188 4.188 9 N -0.564 5.564 10 Si 0.790 3.210 11 H -0.195 1.195 12 H -0.191 1.191 13 H -0.204 1.204 14 C 0.354 3.646 15 O -0.467 6.467 16 C -0.169 4.169 17 C -0.105 4.105 18 C -0.152 4.152 19 C -0.070 4.070 20 C -0.683 4.683 21 S 2.589 3.411 22 C -0.785 4.785 23 O -0.976 6.976 24 O -0.987 6.987 25 C -0.162 4.162 26 C -0.100 4.100 27 H 0.093 0.907 28 H 0.134 0.866 29 H 0.074 0.926 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.133 0.867 33 H 0.065 0.935 34 H 0.042 0.958 35 H 0.016 0.984 36 H 0.078 0.922 37 H 0.128 0.872 38 H 0.170 0.830 39 H 0.194 0.806 40 H 0.205 0.795 41 H 0.180 0.820 42 H 0.151 0.849 43 H 0.175 0.825 44 H 0.192 0.808 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -21.520 21.113 0.969 30.163 hybrid contribution 0.388 -1.146 0.670 1.383 sum -21.132 19.968 1.639 29.119 Atomic orbital electron populations 1.23757 0.94590 1.04097 1.03187 1.21409 0.94940 0.93921 0.87602 1.22668 1.03504 0.94107 1.02658 1.48029 1.50798 1.30508 1.05215 1.18811 0.89149 0.81929 0.95771 1.21776 0.93435 0.92259 1.51233 0.92863 1.25844 0.96262 1.02398 0.94305 1.70062 1.10018 1.26082 1.50265 0.85387 0.78676 0.78607 0.78296 1.19468 1.19119 1.20398 1.18779 0.86484 0.76880 0.82476 1.90648 1.53788 1.57938 1.44322 1.20125 0.95200 1.02729 0.98833 1.21198 0.95080 0.98782 0.95409 1.21209 0.95071 0.97773 1.01159 1.19439 0.95511 0.96712 0.95327 1.29365 1.06314 1.15370 1.17205 1.08179 0.80146 0.77594 0.75150 1.30081 1.17649 1.16215 1.14535 1.93553 1.85889 1.87496 1.30640 1.93562 1.86943 1.42059 1.76175 1.21447 0.94030 1.02039 0.98660 1.23150 0.97829 0.91769 0.97220 0.90724 0.86580 0.92587 0.89127 0.90172 0.86732 0.93475 0.95766 0.98414 0.92232 0.87155 0.82996 0.80596 0.79526 0.82025 0.84869 0.82544 0.80781 0.79163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.96 7.72 71.98 0.56 -5.40 16 2 C 0.12 4.23 3.27 44.99 0.15 4.38 16 3 C -0.17 -4.29 8.36 71.98 0.60 -3.69 16 4 N -0.61 -28.49 2.38 -805.53 -1.92 -30.40 16 5 C 0.26 15.03 5.32 85.63 0.46 15.48 16 6 C -0.55 -32.77 9.39 25.60 0.24 -32.53 16 7 H 0.05 3.18 7.81 -2.91 -0.02 3.16 16 8 C 0.01 0.67 5.46 84.65 0.46 1.14 16 9 N -0.92 -57.06 13.29 21.45 0.28 -56.78 16 10 Si 0.97 46.34 29.54 68.60 2.03 48.36 16 11 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 13 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 14 C 0.56 26.65 5.87 86.79 0.51 27.16 16 15 O -0.59 -32.78 16.79 -3.89 -0.07 -32.85 16 16 C -0.17 -6.14 4.26 -20.09 -0.09 -6.22 16 17 C -0.09 -3.00 9.67 22.53 0.22 -2.79 16 18 C -0.13 -3.45 9.68 22.23 0.22 -3.24 16 19 C -0.07 -1.36 5.15 -19.81 -0.10 -1.46 16 20 C -0.55 -4.19 5.92 71.24 0.42 -3.77 16 21 S 2.40 31.48 5.34 -56.49 -0.30 31.18 16 22 C -0.63 -0.86 10.62 113.37 1.20 0.35 16 23 O -0.98 -21.14 18.10 -127.37 -2.31 -23.45 16 24 O -0.99 -23.98 18.10 -127.37 -2.31 -26.29 16 25 C -0.14 -2.91 9.43 22.23 0.21 -2.70 16 26 C -0.08 -2.24 4.87 22.53 0.11 -2.13 16 27 H 0.07 2.64 3.99 -11.41 -0.05 2.59 16 28 H 0.12 2.35 5.24 -2.39 -0.01 2.34 16 29 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.09 3.16 7.81 -2.39 -0.02 3.15 16 31 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.11 1.80 6.18 -2.39 -0.01 1.79 16 33 H 0.05 1.37 6.82 -2.38 -0.02 1.36 16 34 H 0.02 1.39 7.93 -2.39 -0.02 1.37 16 35 H 0.00 -0.15 7.36 -2.39 -0.02 -0.17 16 36 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 37 H 0.11 4.19 8.06 -2.91 -0.02 4.17 16 38 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 39 H 0.18 0.17 8.08 -2.39 -0.02 0.15 16 40 H 0.19 -0.24 8.08 -2.39 -0.02 -0.25 16 41 H 0.16 -0.74 8.14 -2.39 -0.02 -0.76 16 42 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 43 H 0.16 -0.54 8.14 -2.39 -0.02 -0.56 16 44 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 45 H 0.19 4.42 1.07 -4.03 0.00 4.41 16 Total: -1.00 -96.78 373.40 1.55 -95.22 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 0.97 Total: 10.42 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: 5.16 Total: -15.41 kcal Atomic # 7 Polarization: -85.55 SS G_CDS: -1.63 Total: -87.18 kcal Atomic # 8 Polarization: -77.91 SS G_CDS: -4.68 Total: -82.58 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.36 kcal Atomic # 16 Polarization: 31.48 SS G_CDS: -0.30 Total: 31.18 kcal Total: -96.78 1.55 -95.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522583912.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.325 kcal (2) G-P(sol) polarization free energy of solvation -96.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds