Wall clock time and date at job start Tue Mar 31 2020 22:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 N 1.46499 * 109.46799 * 240.00475 * 2 1 3 5 5 C 1.46499 * 120.00271 * 60.00241 * 4 2 1 6 6 C 1.50692 * 109.47430 * 85.00059 * 5 4 2 7 7 H 1.08000 * 120.00016 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00076 * 180.02562 * 6 5 4 9 9 N 1.31525 * 119.99962 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 120.00338 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47137 * 89.99669 * 10 8 6 12 12 H 1.48503 * 109.47364 * 210.00228 * 10 8 6 13 13 H 1.48507 * 109.46809 * 330.00068 * 10 8 6 14 14 S 1.65611 * 119.99775 * 239.99994 * 4 2 1 15 15 O 1.42102 * 106.39852 * 203.53941 * 14 4 2 16 16 O 1.42098 * 106.40004 * 336.45813 * 14 4 2 17 17 C 1.76197 * 107.21582 * 89.99887 * 14 4 2 18 18 C 1.38296 * 120.00679 * 90.00481 * 17 14 4 19 19 C 1.37960 * 119.95871 * 180.02562 * 18 17 14 20 20 C 1.39152 * 120.21770 * 359.91101 * 19 18 17 21 21 C 1.38371 * 119.69203 * 359.97438 * 20 19 18 22 22 C 1.38106 * 120.00960 * 269.72674 * 17 14 4 23 23 C 1.50772 * 121.40791 * 180.27312 * 21 20 19 24 24 C 1.53079 * 109.67337 * 342.17652 * 23 21 20 25 25 C 1.53412 * 108.29554 * 48.21254 * 24 23 21 26 26 O 1.35842 * 118.50030 * 179.78771 * 20 19 18 27 27 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 28 28 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 30 30 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 31 31 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 32 32 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 34 34 H 1.09007 * 109.46978 * 205.00259 * 5 4 2 35 35 H 1.09003 * 109.47072 * 324.99536 * 5 4 2 36 36 H 0.97000 * 119.99820 * 179.97438 * 9 8 6 37 37 H 1.08000 * 120.01870 * 0.08463 * 18 17 14 38 38 H 1.08000 * 119.89612 * 179.97438 * 19 18 17 39 39 H 1.07994 * 119.84115 * 0.02620 * 22 17 14 40 40 H 1.09000 * 109.43420 * 222.11861 * 23 21 20 41 41 H 1.08995 * 109.43904 * 102.23878 * 23 21 20 42 42 H 1.09000 * 109.69470 * 288.51045 * 24 23 21 43 43 H 1.08997 * 109.73176 * 167.93731 * 24 23 21 44 44 H 1.09003 * 109.67826 * 175.55904 * 25 24 23 45 45 H 1.08992 * 109.71230 * 55.02189 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 1.6644 -0.1899 -2.5268 6 6 2.6338 0.8906 -2.9312 7 1 3.4333 1.1763 -2.2637 8 6 2.4994 1.5153 -4.1529 9 7 3.3452 2.4588 -4.5057 10 14 1.1161 1.0219 -5.3072 11 1 -0.0816 1.8545 -5.0290 12 1 1.5471 1.2287 -6.7132 13 1 0.7832 -0.4100 -5.0971 14 16 2.9704 -2.0371 -1.0444 15 8 3.7117 -2.1425 -2.2521 16 8 3.5794 -1.9554 0.2369 17 6 1.8960 -3.4327 -0.9965 18 6 1.5377 -4.0703 -2.1703 19 6 0.6959 -5.1627 -2.1317 20 6 0.2068 -5.6273 -0.9147 21 6 0.5689 -4.9888 0.2583 22 6 1.4160 -3.8938 0.2136 23 6 0.0667 -5.4631 1.5984 24 6 -1.1548 -6.3645 1.4014 25 6 -0.8222 -7.3956 0.3153 26 8 -0.6230 -6.7028 -0.9177 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9562 0.8901 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.7103 -1.0073 -3.2466 35 1 0.6539 0.2182 -2.5045 36 1 3.2508 2.8980 -5.3654 37 1 1.9174 -3.7138 -3.1164 38 1 0.4165 -5.6596 -3.0490 39 1 1.7005 -3.3966 1.1291 40 1 -0.2120 -4.6025 2.2066 41 1 0.8536 -6.0236 2.1030 42 1 -2.0083 -5.7633 1.0883 43 1 -1.3887 -6.8764 2.3348 44 1 -1.6482 -8.0992 0.2118 45 1 0.0866 -7.9335 0.5850 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000536682006.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:21 Heat of formation + Delta-G solvation = -89.508891 kcal Electronic energy + Delta-G solvation = -28665.200154 eV Core-core repulsion = 24774.869091 eV Total energy + Delta-G solvation = -3890.331063 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.92401 -37.73891 -37.02606 -36.64249 -35.20176 -34.62892 -32.65958 -30.98900 -30.83853 -30.53585 -27.44723 -26.62166 -26.10211 -24.13205 -22.90205 -22.38449 -20.76777 -20.24747 -18.22743 -18.06846 -17.34876 -17.07821 -16.89576 -16.53671 -15.69790 -15.30532 -14.73078 -14.63315 -14.31186 -14.07827 -13.91308 -13.63268 -13.56945 -13.45398 -13.33787 -12.91733 -12.68407 -12.45261 -12.08237 -11.96321 -11.82072 -11.59917 -11.51419 -11.42353 -11.30914 -11.27857 -11.08981 -10.92327 -10.84562 -10.78543 -10.50827 -10.40050 -10.11762 -10.06065 -9.39018 -8.99310 -8.62810 -8.54913 -8.09438 -6.04380 -4.02038 0.76050 1.06797 1.16825 2.90256 3.27550 3.29036 3.36275 3.37156 3.71670 4.22613 4.31604 4.36222 4.37393 4.41345 4.55428 4.75463 4.89348 4.99950 5.06922 5.18609 5.21068 5.23825 5.31625 5.36078 5.46088 5.60046 5.62432 5.65017 5.67685 5.83182 5.85907 5.92575 6.10407 6.12589 6.14635 6.24718 6.41676 6.50855 6.54796 6.71104 6.83686 7.07873 7.12285 7.25805 7.45303 7.61889 8.53228 9.02115 9.54938 11.08801 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015295 B = 0.004009 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.220638 B = 6983.323412 C = 7537.624589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.149 3.851 3 C -0.152 4.152 4 N -0.972 5.972 5 C 0.224 3.776 6 C -0.524 4.524 7 H 0.083 0.917 8 C 0.074 3.926 9 N -0.895 5.895 10 Si 0.867 3.133 11 H -0.276 1.276 12 H -0.284 1.284 13 H -0.264 1.264 14 S 2.687 3.313 15 O -0.940 6.940 16 O -0.973 6.973 17 C -0.703 4.703 18 C 0.013 3.987 19 C -0.169 4.169 20 C 0.176 3.824 21 C -0.186 4.186 22 C 0.015 3.985 23 C -0.078 4.078 24 C -0.160 4.160 25 C 0.059 3.941 26 O -0.313 6.313 27 H 0.067 0.933 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.033 0.967 35 H 0.032 0.968 36 H 0.264 0.736 37 H 0.148 0.852 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.086 0.914 44 H 0.109 0.891 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.991 -16.864 12.361 23.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.042 3.958 3 C -0.211 4.211 4 N -0.811 5.811 5 C 0.101 3.899 6 C -0.563 4.563 7 H 0.101 0.899 8 C -0.129 4.129 9 N -0.534 5.534 10 Si 0.694 3.306 11 H -0.202 1.202 12 H -0.210 1.210 13 H -0.189 1.189 14 S 2.776 3.224 15 O -0.931 6.931 16 O -0.964 6.964 17 C -0.787 4.787 18 C -0.007 4.007 19 C -0.189 4.189 20 C 0.130 3.870 21 C -0.188 4.188 22 C -0.004 4.004 23 C -0.115 4.115 24 C -0.198 4.198 25 C -0.016 4.016 26 O -0.227 6.227 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.104 0.896 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.074 0.926 37 H 0.166 0.834 38 H 0.156 0.844 39 H 0.157 0.843 40 H 0.104 0.896 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.105 0.895 44 H 0.127 0.873 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.172 -16.879 12.095 23.123 hybrid contribution -1.371 -0.548 -0.588 1.589 sum -11.544 -17.426 11.507 23.861 Atomic orbital electron populations 1.22185 0.96038 1.01468 1.02422 1.20716 0.93624 0.95019 0.86412 1.22125 1.01827 0.94958 1.02219 1.57328 1.70213 1.40455 1.13111 1.19466 0.97058 0.95771 0.77571 1.21404 1.13878 1.17899 1.03107 0.89911 1.24841 0.95889 0.94747 0.97406 1.69892 1.36575 1.24905 1.21989 0.86997 0.82835 0.79672 0.81110 1.20152 1.20978 1.18893 1.02163 0.74005 0.72760 0.73498 1.93603 1.67296 1.86093 1.46064 1.93500 1.73721 1.86807 1.42333 1.31388 1.23782 1.24556 0.99021 1.20792 0.90960 0.91396 0.97509 1.20699 1.01556 1.00167 0.96439 1.18903 0.88236 0.86100 0.93716 1.19851 1.04316 0.99925 0.94690 1.20642 0.90467 0.92673 0.96623 1.20481 0.97286 1.00140 0.93576 1.22249 0.99021 0.98451 1.00053 1.23035 1.02275 0.93720 0.82613 1.86019 1.61330 1.40408 1.34910 0.91444 0.93166 0.92180 0.89845 0.93492 0.92379 0.89626 0.94899 0.94978 0.92617 0.83413 0.84417 0.84251 0.89592 0.90225 0.90254 0.89497 0.87329 0.91516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.16 37.16 0.34 -1.95 16 2 C 0.15 2.51 3.24 -67.93 -0.22 2.29 16 3 C -0.15 -2.73 8.20 37.16 0.30 -2.43 16 4 N -0.97 -19.25 2.73 -108.57 -0.30 -19.55 16 5 C 0.22 5.09 3.74 -5.20 -0.02 5.07 16 6 C -0.52 -14.26 8.08 -34.45 -0.28 -14.54 16 7 H 0.08 2.46 7.32 -52.49 -0.38 2.08 16 8 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 9 N -0.90 -26.95 13.96 55.43 0.77 -26.18 16 10 Si 0.87 20.72 27.47 -169.99 -4.67 16.05 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.26 -5.98 6.54 56.52 0.37 -5.61 16 14 S 2.69 52.77 5.64 -107.50 -0.61 52.17 16 15 O -0.94 -21.84 16.26 -57.17 -0.93 -22.77 16 16 O -0.97 -19.73 15.83 -57.17 -0.91 -20.64 16 17 C -0.70 -11.39 5.97 -39.61 -0.24 -11.62 16 18 C 0.01 0.19 9.52 -39.66 -0.38 -0.18 16 19 C -0.17 -2.30 9.94 -39.34 -0.39 -2.69 16 20 C 0.18 2.28 6.47 -39.19 -0.25 2.03 16 21 C -0.19 -2.28 5.75 -104.44 -0.60 -2.88 16 22 C 0.02 0.21 9.15 -39.53 -0.36 -0.15 16 23 C -0.08 -0.67 5.86 -27.81 -0.16 -0.83 16 24 C -0.16 -1.08 6.19 -26.48 -0.16 -1.25 16 25 C 0.06 0.43 7.03 37.37 0.26 0.69 16 26 O -0.31 -3.54 10.27 -19.24 -0.20 -3.74 16 27 H 0.07 1.03 6.69 -51.93 -0.35 0.68 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 1.29 6.91 -51.93 -0.36 0.93 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 33 H 0.08 1.73 6.65 -51.93 -0.35 1.39 16 34 H 0.03 0.76 6.67 -51.92 -0.35 0.41 16 35 H 0.03 0.69 5.88 -51.93 -0.31 0.38 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.15 2.24 7.62 -52.49 -0.40 1.84 16 38 H 0.14 1.59 8.06 -52.49 -0.42 1.16 16 39 H 0.14 1.74 7.60 -52.49 -0.40 1.34 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 369.59 15.07 5.57 5.57 Total: -1.00 -33.87 369.59 -10.21 -44.08 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -6.69 Total: 1.47 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: -2.26 Total: -26.47 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 0.48 Total: -45.73 kcal Atomic # 8 Polarization: -45.11 SS G_CDS: -2.03 Total: -47.14 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.67 Total: 16.05 kcal Atomic # 16 Polarization: 52.77 SS G_CDS: -0.61 Total: 52.17 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.87 -10.21 -44.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000536682006.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.428 kcal (2) G-P(sol) polarization free energy of solvation -33.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds