Wall clock time and date at job start Tue Mar 31 2020 22:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 N 1.46499 * 109.46799 * 240.00475 * 2 1 3 5 5 C 1.46499 * 120.00271 * 60.00241 * 4 2 1 6 6 C 1.50692 * 109.47430 * 85.00059 * 5 4 2 7 7 H 1.08000 * 120.00016 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00076 * 180.02562 * 6 5 4 9 9 N 1.31525 * 119.99962 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 120.00338 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47137 * 89.99669 * 10 8 6 12 12 H 1.48503 * 109.47364 * 210.00228 * 10 8 6 13 13 H 1.48507 * 109.46809 * 330.00068 * 10 8 6 14 14 S 1.65611 * 119.99775 * 239.99994 * 4 2 1 15 15 O 1.42102 * 106.39852 * 203.53941 * 14 4 2 16 16 O 1.42098 * 106.40004 * 336.45813 * 14 4 2 17 17 C 1.76197 * 107.21582 * 89.99887 * 14 4 2 18 18 C 1.38296 * 120.00679 * 90.00481 * 17 14 4 19 19 C 1.37960 * 119.95871 * 180.02562 * 18 17 14 20 20 C 1.39152 * 120.21770 * 359.91101 * 19 18 17 21 21 C 1.38371 * 119.69203 * 359.97438 * 20 19 18 22 22 C 1.38106 * 120.00960 * 269.72674 * 17 14 4 23 23 C 1.50772 * 121.40791 * 180.27312 * 21 20 19 24 24 C 1.53079 * 109.67337 * 342.17652 * 23 21 20 25 25 C 1.53412 * 108.29554 * 48.21254 * 24 23 21 26 26 O 1.35842 * 118.50030 * 179.78771 * 20 19 18 27 27 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 28 28 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 30 30 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 31 31 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 32 32 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 34 34 H 1.09007 * 109.46978 * 205.00259 * 5 4 2 35 35 H 1.09003 * 109.47072 * 324.99536 * 5 4 2 36 36 H 0.97000 * 119.99820 * 179.97438 * 9 8 6 37 37 H 1.08000 * 120.01870 * 0.08463 * 18 17 14 38 38 H 1.08000 * 119.89612 * 179.97438 * 19 18 17 39 39 H 1.07994 * 119.84115 * 0.02620 * 22 17 14 40 40 H 1.09000 * 109.43420 * 222.11861 * 23 21 20 41 41 H 1.08995 * 109.43904 * 102.23878 * 23 21 20 42 42 H 1.09000 * 109.69470 * 288.51045 * 24 23 21 43 43 H 1.08997 * 109.73176 * 167.93731 * 24 23 21 44 44 H 1.09003 * 109.67826 * 175.55904 * 25 24 23 45 45 H 1.08992 * 109.71230 * 55.02189 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 1.6644 -0.1899 -2.5268 6 6 2.6338 0.8906 -2.9312 7 1 3.4333 1.1763 -2.2637 8 6 2.4994 1.5153 -4.1529 9 7 3.3452 2.4588 -4.5057 10 14 1.1161 1.0219 -5.3072 11 1 -0.0816 1.8545 -5.0290 12 1 1.5471 1.2287 -6.7132 13 1 0.7832 -0.4100 -5.0971 14 16 2.9704 -2.0371 -1.0444 15 8 3.7117 -2.1425 -2.2521 16 8 3.5794 -1.9554 0.2369 17 6 1.8960 -3.4327 -0.9965 18 6 1.5377 -4.0703 -2.1703 19 6 0.6959 -5.1627 -2.1317 20 6 0.2068 -5.6273 -0.9147 21 6 0.5689 -4.9888 0.2583 22 6 1.4160 -3.8938 0.2136 23 6 0.0667 -5.4631 1.5984 24 6 -1.1548 -6.3645 1.4014 25 6 -0.8222 -7.3956 0.3153 26 8 -0.6230 -6.7028 -0.9177 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9562 0.8901 32 1 3.1301 1.4425 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.7103 -1.0073 -3.2466 35 1 0.6539 0.2182 -2.5045 36 1 3.2508 2.8980 -5.3654 37 1 1.9174 -3.7138 -3.1164 38 1 0.4165 -5.6596 -3.0490 39 1 1.7005 -3.3966 1.1291 40 1 -0.2120 -4.6025 2.2066 41 1 0.8536 -6.0236 2.1030 42 1 -2.0083 -5.7633 1.0883 43 1 -1.3887 -6.8764 2.3348 44 1 -1.6482 -8.0992 0.2118 45 1 0.0866 -7.9335 0.5850 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000536682006.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:20 Heat of formation + Delta-G solvation = -112.768271 kcal Electronic energy + Delta-G solvation = -28666.208756 eV Core-core repulsion = 24774.869091 eV Total energy + Delta-G solvation = -3891.339665 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.78974 -38.70536 -38.54080 -38.27931 -36.85290 -35.35039 -34.70438 -32.48336 -31.88408 -31.52178 -29.33577 -27.91337 -26.81917 -25.02503 -24.33753 -23.86684 -21.93171 -21.38976 -19.62278 -19.06870 -18.92577 -18.75812 -18.19388 -17.77652 -16.88106 -16.49343 -16.19452 -15.58272 -15.54829 -15.33864 -15.03467 -14.88307 -14.67102 -14.62193 -14.40288 -14.32201 -14.13593 -13.83928 -13.56183 -13.31956 -13.10704 -13.05394 -13.02763 -12.73550 -12.70616 -12.52976 -12.45737 -12.26334 -12.05624 -11.90030 -11.86984 -11.74036 -11.58831 -11.48984 -11.34534 -10.69804 -10.01525 -9.77395 -9.56661 -8.21417 -6.23754 -0.59689 -0.20118 0.13880 1.37630 1.41680 1.50354 1.96515 2.18681 2.39326 2.43757 2.86984 3.11680 3.26574 3.56407 3.60473 3.74497 3.88270 3.90871 4.08302 4.15283 4.29401 4.32137 4.34447 4.39647 4.52768 4.57730 4.61992 4.78402 4.81317 4.84700 4.90710 4.93502 4.96289 4.98381 5.05496 5.08055 5.13726 5.15184 5.20611 5.28577 5.53374 5.53862 5.56935 5.69510 5.91404 6.26628 6.39347 6.78895 7.36823 8.95593 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015295 B = 0.004009 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.220638 B = 6983.323412 C = 7537.624589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.139 3.861 3 C -0.149 4.149 4 N -0.979 5.979 5 C 0.232 3.768 6 C -0.523 4.523 7 H 0.038 0.962 8 C 0.009 3.991 9 N -0.949 5.949 10 Si 0.932 3.068 11 H -0.256 1.256 12 H -0.287 1.287 13 H -0.242 1.242 14 S 2.689 3.311 15 O -0.991 6.991 16 O -0.989 6.989 17 C -0.707 4.707 18 C -0.006 4.006 19 C -0.173 4.173 20 C 0.180 3.820 21 C -0.181 4.181 22 C 0.010 3.990 23 C -0.083 4.083 24 C -0.155 4.155 25 C 0.046 3.954 26 O -0.322 6.322 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.026 0.974 33 H 0.055 0.945 34 H 0.033 0.967 35 H 0.055 0.945 36 H 0.265 0.735 37 H 0.139 0.861 38 H 0.155 0.845 39 H 0.153 0.847 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.118 0.882 44 H 0.136 0.864 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.784 -19.784 14.295 28.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.033 3.967 3 C -0.208 4.208 4 N -0.817 5.817 5 C 0.108 3.892 6 C -0.563 4.563 7 H 0.056 0.944 8 C -0.188 4.188 9 N -0.590 5.590 10 Si 0.755 3.245 11 H -0.181 1.181 12 H -0.213 1.213 13 H -0.165 1.165 14 S 2.784 3.216 15 O -0.981 6.981 16 O -0.979 6.979 17 C -0.797 4.797 18 C -0.025 4.025 19 C -0.192 4.192 20 C 0.133 3.867 21 C -0.182 4.182 22 C -0.010 4.010 23 C -0.119 4.119 24 C -0.192 4.192 25 C -0.028 4.028 26 O -0.235 6.235 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.109 0.891 30 H 0.118 0.882 31 H 0.102 0.898 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.157 0.843 38 H 0.173 0.827 39 H 0.171 0.829 40 H 0.118 0.882 41 H 0.113 0.887 42 H 0.092 0.908 43 H 0.136 0.864 44 H 0.154 0.846 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.947 -19.769 14.067 27.986 hybrid contribution -0.177 0.219 -1.026 1.064 sum -14.124 -19.549 13.041 27.418 Atomic orbital electron populations 1.22128 0.93133 1.02750 1.03300 1.21037 0.95965 0.93823 0.85832 1.22077 0.99836 0.96373 1.02552 1.57246 1.70200 1.41394 1.12898 1.19217 0.96619 0.94237 0.79115 1.21664 1.13426 1.18766 1.02417 0.94372 1.25788 0.98871 0.94693 0.99433 1.70067 1.39268 1.26869 1.22769 0.85945 0.79744 0.80779 0.78054 1.18057 1.21304 1.16545 1.01580 0.74240 0.73478 0.72307 1.93534 1.69599 1.87009 1.47966 1.93461 1.74742 1.87365 1.42361 1.30623 1.24875 1.23501 1.00663 1.20799 0.92146 0.92573 0.96980 1.20870 1.00980 0.99507 0.97868 1.19032 0.87698 0.86402 0.93573 1.20237 1.02888 0.98653 0.96471 1.20861 0.90641 0.93430 0.96041 1.20667 0.98516 1.01302 0.91451 1.22260 0.97769 0.97956 1.01201 1.23461 1.03875 0.94037 0.81405 1.86023 1.60355 1.39713 1.37405 0.92693 0.91661 0.89124 0.88157 0.89781 0.95473 0.92549 0.94918 0.92744 0.92637 0.84286 0.82720 0.82942 0.88245 0.88745 0.90768 0.86411 0.84638 0.90594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.96 9.16 71.98 0.66 -3.30 16 2 C 0.14 4.60 3.24 44.99 0.15 4.74 16 3 C -0.15 -5.48 8.20 71.98 0.59 -4.89 16 4 N -0.98 -39.40 2.73 -497.41 -1.36 -40.76 16 5 C 0.23 10.69 3.74 85.63 0.32 11.01 16 6 C -0.52 -29.89 8.08 25.60 0.21 -29.68 16 7 H 0.04 2.45 7.32 -2.91 -0.02 2.43 16 8 C 0.01 0.55 5.47 84.65 0.46 1.01 16 9 N -0.95 -59.96 13.96 21.45 0.30 -59.66 16 10 Si 0.93 43.02 27.47 68.60 1.88 44.90 16 11 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 12 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 13 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 14 S 2.69 108.75 5.64 -56.49 -0.32 108.43 16 15 O -0.99 -48.63 16.26 -128.00 -2.08 -50.71 16 16 O -0.99 -40.95 15.83 -128.00 -2.03 -42.98 16 17 C -0.71 -22.55 5.97 22.25 0.13 -22.42 16 18 C -0.01 -0.17 9.52 22.22 0.21 0.04 16 19 C -0.17 -4.41 9.94 22.42 0.22 -4.19 16 20 C 0.18 4.14 6.47 22.52 0.15 4.29 16 21 C -0.18 -3.87 5.75 -19.75 -0.11 -3.98 16 22 C 0.01 0.25 9.15 22.30 0.20 0.45 16 23 C -0.08 -1.05 5.86 29.90 0.18 -0.88 16 24 C -0.15 -1.34 6.19 30.76 0.19 -1.15 16 25 C 0.05 0.48 7.03 72.12 0.51 0.98 16 26 O -0.32 -6.15 10.27 -91.77 -0.94 -7.10 16 27 H 0.05 1.55 6.69 -2.39 -0.02 1.53 16 28 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.09 1.77 8.14 -2.39 -0.02 1.76 16 30 H 0.10 2.98 6.91 -2.39 -0.02 2.97 16 31 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.03 1.11 7.93 -2.39 -0.02 1.09 16 33 H 0.06 2.37 6.65 -2.39 -0.02 2.36 16 34 H 0.03 1.52 6.67 -2.38 -0.02 1.50 16 35 H 0.05 2.28 5.88 -2.39 -0.01 2.26 16 36 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 37 H 0.14 4.36 7.62 -2.91 -0.02 4.33 16 38 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 39 H 0.15 3.45 7.60 -2.91 -0.02 3.43 16 40 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 43 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 44 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -78.70 369.59 0.45 -78.25 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.93 Total: 17.57 kcal Atomic # 6 Polarization: -52.01 SS G_CDS: 4.06 Total: -47.94 kcal Atomic # 7 Polarization: -99.37 SS G_CDS: -1.06 Total: -100.42 kcal Atomic # 8 Polarization: -95.73 SS G_CDS: -5.05 Total: -100.78 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.88 Total: 44.90 kcal Atomic # 16 Polarization: 108.75 SS G_CDS: -0.32 Total: 108.43 kcal Total: -78.70 0.45 -78.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000536682006.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.517 kcal (2) G-P(sol) polarization free energy of solvation -78.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds