Wall clock time and date at job start Tue Mar 31 2020 22:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.47039 * 2 1 4 4 N 1.46497 * 109.46877 * 185.71814 * 3 2 1 5 5 C 1.36869 * 120.00022 * 278.56280 * 4 3 2 6 6 H 1.08001 * 120.00267 * 180.64436 * 5 4 3 7 7 C 1.39046 * 120.00217 * 0.65246 * 5 4 3 8 8 N 1.31369 * 119.99762 * 9.89062 * 7 5 4 9 9 Si 1.86797 * 120.00595 * 189.89198 * 7 5 4 10 10 H 1.48502 * 109.46815 * 89.99653 * 9 7 5 11 11 H 1.48496 * 109.47486 * 209.99800 * 9 7 5 12 12 H 1.48504 * 109.46839 * 329.99948 * 9 7 5 13 13 C 1.34781 * 120.00331 * 98.57160 * 4 3 2 14 14 O 1.21583 * 120.00320 * 186.35341 * 13 4 3 15 15 C 1.47728 * 119.99529 * 6.35480 * 13 4 3 16 16 C 1.39665 * 120.15311 * 315.12625 * 15 13 4 17 17 C 1.37914 * 119.84457 * 180.02562 * 16 15 13 18 18 C 1.38400 * 120.15394 * 359.72430 * 17 16 15 19 19 C 1.38355 * 120.30161 * 0.55183 * 18 17 16 20 20 S 1.76198 * 119.92126 * 179.72641 * 19 18 17 21 21 O 1.42097 * 104.27700 * 153.65239 * 20 19 18 22 22 O 1.42104 * 104.27969 * 25.79378 * 20 19 18 23 23 C 1.81406 * 104.44663 * 269.72522 * 20 19 18 24 24 C 1.52993 * 109.47175 * 304.99886 * 23 20 19 25 25 C 1.53001 * 109.46723 * 185.00260 * 23 20 19 26 26 C 1.37957 * 120.15292 * 359.44478 * 19 18 17 27 27 H 1.08996 * 109.46894 * 300.00491 * 1 2 3 28 28 H 1.08999 * 109.47029 * 60.00224 * 1 2 3 29 29 H 1.08996 * 109.46399 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47486 * 239.99953 * 2 1 3 31 31 H 1.08999 * 109.47029 * 119.99776 * 2 1 3 32 32 H 1.08996 * 109.46920 * 65.71570 * 3 2 1 33 33 H 1.09001 * 109.46898 * 305.71456 * 3 2 1 34 34 H 0.97001 * 120.00104 * 180.02562 * 8 7 5 35 35 H 1.08000 * 120.07458 * 359.97438 * 16 15 13 36 36 H 1.08002 * 119.92092 * 180.02562 * 17 16 15 37 37 H 1.07995 * 119.84811 * 180.27407 * 18 17 16 38 38 H 1.08993 * 109.47328 * 65.00125 * 23 20 19 39 39 H 1.09006 * 109.47122 * 59.99574 * 24 23 20 40 40 H 1.08999 * 109.47457 * 180.02562 * 24 23 20 41 41 H 1.09005 * 109.47596 * 300.00404 * 24 23 20 42 42 H 1.09000 * 109.46691 * 180.02562 * 25 23 20 43 43 H 1.08998 * 109.47178 * 299.99595 * 25 23 20 44 44 H 1.08993 * 109.47328 * 59.99866 * 25 23 20 45 45 H 1.07997 * 120.07604 * 180.24980 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.4985 1.4448 -0.1376 5 6 4.2897 1.2305 0.9585 6 1 5.3650 1.2425 0.8590 7 6 3.7090 0.9973 2.2002 8 7 2.4151 0.7891 2.2915 9 14 4.7685 0.9798 3.7385 10 1 4.8394 2.3502 4.3062 11 1 4.1724 0.0594 4.7398 12 1 6.1362 0.5160 3.3923 13 6 4.0614 1.6580 -1.3436 14 8 5.2641 1.5459 -1.4815 15 6 3.2168 2.0280 -2.4977 16 6 2.0217 1.3469 -2.7396 17 6 1.2384 1.6972 -3.8192 18 6 1.6313 2.7249 -4.6588 19 6 2.8167 3.4001 -4.4284 20 16 3.3108 4.7021 -5.5079 21 8 4.1322 5.5341 -4.7004 22 8 2.0916 5.1855 -6.0550 23 6 4.3000 3.8791 -6.7865 24 6 5.4295 3.0862 -6.1259 25 6 4.8961 4.9300 -7.7253 26 6 3.6099 3.0601 -3.3521 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.7627 1.9259 0.9367 33 1 1.5955 1.9850 -0.8344 34 1 2.0099 0.6268 3.1577 35 1 1.7122 0.5472 -2.0830 36 1 0.3138 1.1716 -4.0071 37 1 1.0119 2.9981 -5.5003 38 1 3.6652 3.2008 -7.3566 39 1 5.0048 2.3376 -5.4569 40 1 6.0242 2.5920 -6.8941 41 1 6.0644 3.7644 -5.5557 42 1 5.4901 4.4354 -8.4938 43 1 4.0914 5.4948 -8.1960 44 1 5.5308 5.6082 -7.1552 45 1 4.5330 3.5907 -3.1711 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547453532.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:07 Heat of formation + Delta-G solvation = -57.294937 kcal Electronic energy + Delta-G solvation = -28363.947477 eV Core-core repulsion = 24475.013316 eV Total energy + Delta-G solvation = -3888.934161 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -39.76492 -37.74707 -37.11935 -35.92341 -35.58035 -35.22282 -32.65177 -31.62891 -31.00396 -30.70015 -27.57093 -26.08861 -24.93863 -23.25967 -22.92158 -22.40967 -20.80342 -19.95167 -18.63488 -17.65661 -16.98224 -16.80212 -16.35069 -15.91697 -15.55873 -15.02229 -14.76542 -14.46587 -14.17357 -13.91749 -13.72099 -13.59645 -13.49581 -13.37789 -12.99313 -12.64665 -12.54137 -12.24593 -12.07100 -11.98454 -11.96781 -11.85363 -11.69461 -11.61552 -11.53026 -11.32777 -11.04523 -10.84803 -10.64762 -10.47783 -10.40394 -10.29724 -10.18381 -9.96086 -9.09719 -8.88348 -8.80965 -8.46950 -7.88501 -6.35465 -3.92646 0.03118 0.97961 1.37746 2.86027 3.06747 3.18234 3.23056 3.38903 3.81814 3.95093 4.02042 4.13586 4.31227 4.49057 4.71952 4.82716 4.96547 5.03838 5.08525 5.22533 5.26145 5.30675 5.46565 5.47701 5.54326 5.59850 5.68932 5.86811 5.90125 5.93852 5.95237 6.06398 6.14439 6.16944 6.35446 6.43179 6.54548 6.62012 6.78692 6.85726 6.98563 7.26974 7.48773 7.69639 7.92967 8.38310 9.02856 9.27045 9.82001 10.49566 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017514 B = 0.003462 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.347159 B = 8085.761907 C = 8993.573396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.126 4.126 3 C 0.109 3.891 4 N -0.426 5.426 5 C -0.290 4.290 6 H 0.108 0.892 7 C 0.024 3.976 8 N -0.869 5.869 9 Si 0.934 3.066 10 H -0.276 1.276 11 H -0.283 1.283 12 H -0.269 1.269 13 C 0.464 3.536 14 O -0.590 6.590 15 C -0.106 4.106 16 C -0.056 4.056 17 C -0.147 4.147 18 C -0.028 4.028 19 C -0.665 4.665 20 S 2.496 3.504 21 O -0.933 6.933 22 O -0.943 6.943 23 C -0.569 4.569 24 C -0.147 4.147 25 C -0.145 4.145 26 C 0.013 3.987 27 H 0.056 0.944 28 H 0.036 0.964 29 H 0.041 0.959 30 H 0.029 0.971 31 H 0.110 0.890 32 H 0.120 0.880 33 H 0.038 0.962 34 H 0.268 0.732 35 H 0.151 0.849 36 H 0.131 0.869 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.075 0.925 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.344 1.902 -14.638 15.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.164 4.164 3 C -0.014 4.014 4 N -0.141 5.141 5 C -0.418 4.418 6 H 0.126 0.874 7 C -0.178 4.178 8 N -0.510 5.510 9 Si 0.761 3.239 10 H -0.202 1.202 11 H -0.208 1.208 12 H -0.194 1.194 13 C 0.253 3.747 14 O -0.477 6.477 15 C -0.111 4.111 16 C -0.075 4.075 17 C -0.166 4.166 18 C -0.048 4.048 19 C -0.753 4.753 20 S 2.677 3.323 21 O -0.930 6.930 22 O -0.941 6.941 23 C -0.678 4.678 24 C -0.204 4.204 25 C -0.203 4.203 26 C -0.007 4.007 27 H 0.075 0.925 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.128 0.872 32 H 0.137 0.863 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.169 0.831 36 H 0.149 0.851 37 H 0.154 0.846 38 H 0.156 0.844 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.087 2.668 -14.389 14.956 hybrid contribution 0.205 -1.050 0.771 1.319 sum -2.882 1.618 -13.618 14.014 Atomic orbital electron populations 1.21642 0.97253 1.00102 1.00785 1.22138 0.93853 0.98210 1.02183 1.22149 0.79698 0.97199 1.02358 1.43787 1.06308 1.57797 1.06176 1.19918 0.92391 1.44657 0.84849 0.87409 1.25341 0.96476 0.96529 0.99460 1.70091 1.09751 1.46259 1.24875 0.85777 0.79728 0.78252 0.80147 1.20232 1.20825 1.19377 1.17706 0.87549 0.86752 0.82651 1.90617 1.14548 1.58691 1.83836 1.20408 0.95789 0.97235 0.97639 1.22433 0.92029 0.97872 0.95152 1.21183 1.00772 0.98744 0.95920 1.20898 0.93068 0.92583 0.98239 1.30224 1.06391 1.23260 1.15428 1.05565 0.75317 0.75486 0.75976 1.93569 1.69946 1.63447 1.66029 1.93540 1.42752 1.77901 1.79863 1.30009 1.12204 1.10681 1.14943 1.21733 0.96713 1.00570 1.01425 1.21677 1.02070 0.97219 0.99362 1.20915 0.97265 0.92550 0.89960 0.92477 0.94464 0.93984 0.95312 0.87173 0.86272 0.94407 0.92121 0.83134 0.85080 0.84574 0.84373 0.90411 0.90305 0.90321 0.89803 0.91099 0.90566 0.83844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.87 37.16 0.37 -1.87 16 2 C -0.13 -2.48 4.67 -26.73 -0.12 -2.60 16 3 C 0.11 2.36 4.17 -4.04 -0.02 2.34 16 4 N -0.43 -10.61 2.64 -115.93 -0.31 -10.92 16 5 C -0.29 -7.71 9.50 -15.00 -0.14 -7.85 16 6 H 0.11 3.03 7.19 -52.49 -0.38 2.65 16 7 C 0.02 0.58 5.33 -17.45 -0.09 0.48 16 8 N -0.87 -20.53 7.19 55.50 0.40 -20.13 16 9 Si 0.93 19.73 29.56 -169.99 -5.03 14.71 16 10 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 11 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 12 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 13 C 0.46 11.46 7.23 -12.38 -0.09 11.37 16 14 O -0.59 -16.35 16.58 5.29 0.09 -16.26 16 15 C -0.11 -2.14 5.13 -104.97 -0.54 -2.68 16 16 C -0.06 -0.96 7.38 -39.17 -0.29 -1.25 16 17 C -0.15 -2.05 10.03 -39.64 -0.40 -2.44 16 18 C -0.03 -0.39 9.47 -39.48 -0.37 -0.76 16 19 C -0.67 -10.02 4.87 -39.64 -0.19 -10.22 16 20 S 2.50 33.14 4.67 -107.50 -0.50 32.64 16 21 O -0.93 -15.32 17.11 -57.54 -0.98 -16.31 16 22 O -0.94 -14.10 17.11 -57.54 -0.98 -15.09 16 23 C -0.57 -5.26 3.48 -26.73 -0.09 -5.35 16 24 C -0.15 -1.46 8.89 37.15 0.33 -1.13 16 25 C -0.14 -1.12 9.20 37.16 0.34 -0.78 16 26 C 0.01 0.24 8.09 -39.17 -0.32 -0.08 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.04 0.53 8.13 -51.93 -0.42 0.10 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.03 0.55 6.33 -51.93 -0.33 0.23 16 31 H 0.11 2.48 5.87 -51.93 -0.31 2.18 16 32 H 0.12 2.81 5.80 -51.93 -0.30 2.51 16 33 H 0.04 0.76 4.93 -51.93 -0.26 0.50 16 34 H 0.27 6.03 8.31 -40.82 -0.34 5.69 16 35 H 0.15 2.56 3.66 -52.49 -0.19 2.37 16 36 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.14 1.48 7.55 -52.49 -0.40 1.08 16 38 H 0.14 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.08 0.86 6.58 -51.93 -0.34 0.52 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.14 2.64 7.56 -52.49 -0.40 2.25 16 LS Contribution 368.58 15.07 5.55 5.55 Total: -1.00 -32.09 368.58 -9.65 -41.73 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -6.26 Total: 6.87 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: -1.63 Total: -22.81 kcal Atomic # 7 Polarization: -31.13 SS G_CDS: 0.09 Total: -31.04 kcal Atomic # 8 Polarization: -45.78 SS G_CDS: -1.88 Total: -47.66 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.03 Total: 14.71 kcal Atomic # 16 Polarization: 33.14 SS G_CDS: -0.50 Total: 32.64 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.09 -9.65 -41.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547453532.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.561 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds