Wall clock time and date at job start Tue Mar 31 2020 22:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.47039 * 2 1 4 4 N 1.46497 * 109.46877 * 185.71814 * 3 2 1 5 5 C 1.36869 * 120.00022 * 278.56280 * 4 3 2 6 6 H 1.08001 * 120.00267 * 180.64436 * 5 4 3 7 7 C 1.39046 * 120.00217 * 0.65246 * 5 4 3 8 8 N 1.31369 * 119.99762 * 9.89062 * 7 5 4 9 9 Si 1.86797 * 120.00595 * 189.89198 * 7 5 4 10 10 H 1.48502 * 109.46815 * 89.99653 * 9 7 5 11 11 H 1.48496 * 109.47486 * 209.99800 * 9 7 5 12 12 H 1.48504 * 109.46839 * 329.99948 * 9 7 5 13 13 C 1.34781 * 120.00331 * 98.57160 * 4 3 2 14 14 O 1.21583 * 120.00320 * 186.35341 * 13 4 3 15 15 C 1.47728 * 119.99529 * 6.35480 * 13 4 3 16 16 C 1.39665 * 120.15311 * 315.12625 * 15 13 4 17 17 C 1.37914 * 119.84457 * 180.02562 * 16 15 13 18 18 C 1.38400 * 120.15394 * 359.72430 * 17 16 15 19 19 C 1.38355 * 120.30161 * 0.55183 * 18 17 16 20 20 S 1.76198 * 119.92126 * 179.72641 * 19 18 17 21 21 O 1.42097 * 104.27700 * 153.65239 * 20 19 18 22 22 O 1.42104 * 104.27969 * 25.79378 * 20 19 18 23 23 C 1.81406 * 104.44663 * 269.72522 * 20 19 18 24 24 C 1.52993 * 109.47175 * 304.99886 * 23 20 19 25 25 C 1.53001 * 109.46723 * 185.00260 * 23 20 19 26 26 C 1.37957 * 120.15292 * 359.44478 * 19 18 17 27 27 H 1.08996 * 109.46894 * 300.00491 * 1 2 3 28 28 H 1.08999 * 109.47029 * 60.00224 * 1 2 3 29 29 H 1.08996 * 109.46399 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47486 * 239.99953 * 2 1 3 31 31 H 1.08999 * 109.47029 * 119.99776 * 2 1 3 32 32 H 1.08996 * 109.46920 * 65.71570 * 3 2 1 33 33 H 1.09001 * 109.46898 * 305.71456 * 3 2 1 34 34 H 0.97001 * 120.00104 * 180.02562 * 8 7 5 35 35 H 1.08000 * 120.07458 * 359.97438 * 16 15 13 36 36 H 1.08002 * 119.92092 * 180.02562 * 17 16 15 37 37 H 1.07995 * 119.84811 * 180.27407 * 18 17 16 38 38 H 1.08993 * 109.47328 * 65.00125 * 23 20 19 39 39 H 1.09006 * 109.47122 * 59.99574 * 24 23 20 40 40 H 1.08999 * 109.47457 * 180.02562 * 24 23 20 41 41 H 1.09005 * 109.47596 * 300.00404 * 24 23 20 42 42 H 1.09000 * 109.46691 * 180.02562 * 25 23 20 43 43 H 1.08998 * 109.47178 * 299.99595 * 25 23 20 44 44 H 1.08993 * 109.47328 * 59.99866 * 25 23 20 45 45 H 1.07997 * 120.07604 * 180.24980 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.4985 1.4448 -0.1376 5 6 4.2897 1.2305 0.9585 6 1 5.3650 1.2425 0.8590 7 6 3.7090 0.9973 2.2002 8 7 2.4151 0.7891 2.2915 9 14 4.7685 0.9798 3.7385 10 1 4.8394 2.3502 4.3062 11 1 4.1724 0.0594 4.7398 12 1 6.1362 0.5160 3.3923 13 6 4.0614 1.6580 -1.3436 14 8 5.2641 1.5459 -1.4815 15 6 3.2168 2.0280 -2.4977 16 6 2.0217 1.3469 -2.7396 17 6 1.2384 1.6972 -3.8192 18 6 1.6313 2.7249 -4.6588 19 6 2.8167 3.4001 -4.4284 20 16 3.3108 4.7021 -5.5079 21 8 4.1322 5.5341 -4.7004 22 8 2.0916 5.1855 -6.0550 23 6 4.3000 3.8791 -6.7865 24 6 5.4295 3.0862 -6.1259 25 6 4.8961 4.9300 -7.7253 26 6 3.6099 3.0601 -3.3521 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.7627 1.9259 0.9367 33 1 1.5955 1.9850 -0.8344 34 1 2.0099 0.6268 3.1577 35 1 1.7122 0.5472 -2.0830 36 1 0.3138 1.1716 -4.0071 37 1 1.0119 2.9981 -5.5003 38 1 3.6652 3.2008 -7.3566 39 1 5.0048 2.3376 -5.4569 40 1 6.0242 2.5920 -6.8941 41 1 6.0644 3.7644 -5.5557 42 1 5.4901 4.4354 -8.4938 43 1 4.0914 5.4948 -8.1960 44 1 5.5308 5.6082 -7.1552 45 1 4.5330 3.5907 -3.1711 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547453532.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:06 Heat of formation + Delta-G solvation = -78.177243 kcal Electronic energy + Delta-G solvation = -28364.853002 eV Core-core repulsion = 24475.013316 eV Total energy + Delta-G solvation = -3889.839685 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.34267 -39.28692 -38.24560 -37.45027 -37.05532 -35.98692 -34.34501 -33.37556 -32.30203 -32.12113 -28.27809 -27.82602 -26.60997 -24.46414 -24.35758 -23.33457 -22.38627 -21.47481 -19.84336 -19.10187 -18.75276 -17.86543 -17.78302 -17.14536 -16.88741 -16.49265 -16.24979 -15.96253 -15.46523 -15.39830 -15.20218 -14.99295 -14.56396 -14.31601 -14.17856 -13.93107 -13.85224 -13.56444 -13.29312 -13.23336 -13.21076 -13.14660 -13.10076 -12.78970 -12.63016 -12.45910 -12.39626 -12.35463 -12.17681 -12.10942 -11.98593 -11.76897 -11.60162 -11.23281 -10.75891 -10.57710 -10.29675 -9.99337 -9.75285 -8.24483 -5.92305 -0.97892 -0.28021 0.05987 1.34839 1.40682 1.51268 1.79125 1.87593 2.21151 2.46013 2.87405 2.91033 3.08019 3.10642 3.56472 3.63025 3.76374 3.83043 3.96276 4.13714 4.17819 4.34118 4.36888 4.53421 4.59004 4.59796 4.63258 4.66695 4.69331 4.79623 4.84304 4.87247 4.96813 5.06597 5.14493 5.17861 5.18934 5.27167 5.29712 5.34493 5.46211 5.64694 5.75228 5.97027 6.03524 6.47934 7.08917 7.37475 7.92396 8.57385 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017514 B = 0.003462 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.347159 B = 8085.761907 C = 8993.573396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.117 4.117 3 C 0.114 3.886 4 N -0.435 5.435 5 C -0.341 4.341 6 H 0.075 0.925 7 C 0.003 3.997 8 N -0.862 5.862 9 Si 0.992 3.008 10 H -0.273 1.273 11 H -0.265 1.265 12 H -0.280 1.280 13 C 0.449 3.551 14 O -0.641 6.641 15 C -0.137 4.137 16 C -0.063 4.063 17 C -0.131 4.131 18 C -0.016 4.016 19 C -0.664 4.664 20 S 2.492 3.508 21 O -0.976 6.976 22 O -0.959 6.959 23 C -0.534 4.534 24 C -0.156 4.156 25 C -0.156 4.156 26 C -0.002 4.002 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.030 0.970 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.056 0.944 34 H 0.275 0.725 35 H 0.150 0.850 36 H 0.179 0.821 37 H 0.177 0.823 38 H 0.177 0.823 39 H 0.062 0.938 40 H 0.107 0.893 41 H 0.065 0.935 42 H 0.112 0.888 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.034 1.330 -17.265 18.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.155 4.155 3 C -0.008 4.008 4 N -0.150 5.150 5 C -0.469 4.469 6 H 0.093 0.907 7 C -0.200 4.200 8 N -0.501 5.501 9 Si 0.816 3.184 10 H -0.199 1.199 11 H -0.189 1.189 12 H -0.205 1.205 13 C 0.239 3.761 14 O -0.531 6.531 15 C -0.141 4.141 16 C -0.081 4.081 17 C -0.149 4.149 18 C -0.035 4.035 19 C -0.750 4.750 20 S 2.676 3.324 21 O -0.974 6.974 22 O -0.956 6.956 23 C -0.648 4.648 24 C -0.214 4.214 25 C -0.215 4.215 26 C -0.022 4.022 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.048 0.952 31 H 0.097 0.903 32 H 0.116 0.884 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.167 0.833 36 H 0.196 0.804 37 H 0.194 0.806 38 H 0.194 0.806 39 H 0.081 0.919 40 H 0.126 0.874 41 H 0.084 0.916 42 H 0.131 0.869 43 H 0.103 0.897 44 H 0.088 0.912 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.873 2.100 -16.960 18.070 hybrid contribution 1.039 -0.852 1.449 1.977 sum -4.833 1.248 -15.510 16.294 Atomic orbital electron populations 1.21561 0.93880 1.01684 1.01674 1.21954 0.96644 0.96215 1.00694 1.22177 0.78082 0.98696 1.01887 1.44009 1.07502 1.57537 1.05947 1.19753 0.91537 1.48834 0.86768 0.90727 1.25958 0.97846 0.95267 1.00915 1.70194 1.10005 1.44107 1.25755 0.84948 0.77854 0.78481 0.77114 1.19859 1.18937 1.20506 1.18524 0.87671 0.86019 0.83848 1.90541 1.16895 1.60729 1.84955 1.20114 0.97237 0.99676 0.97036 1.22449 0.91285 0.97710 0.96701 1.21652 1.01323 0.98181 0.93760 1.21480 0.92132 0.91210 0.98691 1.30516 1.06559 1.23317 1.14561 1.05778 0.75207 0.75151 0.76309 1.93518 1.70523 1.65238 1.68096 1.93510 1.43997 1.78382 1.79715 1.29781 1.11278 1.10983 1.12743 1.21839 0.97186 1.00300 1.02056 1.21892 1.02925 0.97088 0.99556 1.20755 0.97466 0.92728 0.91229 0.93107 0.92019 0.92050 0.95168 0.90283 0.88370 0.92616 0.91411 0.83258 0.80412 0.80600 0.80556 0.91901 0.87434 0.91567 0.86908 0.89694 0.91151 0.85988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.86 9.87 71.98 0.71 -3.15 16 2 C -0.12 -4.61 4.67 30.60 0.14 -4.46 16 3 C 0.11 5.06 4.17 86.38 0.36 5.42 16 4 N -0.44 -23.13 2.64 -638.95 -1.69 -24.82 16 5 C -0.34 -19.43 9.50 84.10 0.80 -18.63 16 6 H 0.07 4.62 7.19 -2.91 -0.02 4.60 16 7 C 0.00 0.13 5.33 84.96 0.45 0.58 16 8 N -0.86 -41.40 7.19 21.68 0.16 -41.24 16 9 Si 0.99 41.58 29.56 68.60 2.03 43.61 16 10 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 11 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 12 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 13 C 0.45 23.86 7.23 86.75 0.63 24.49 16 14 O -0.64 -38.86 16.58 -3.98 -0.07 -38.93 16 15 C -0.14 -5.73 5.13 -20.09 -0.10 -5.83 16 16 C -0.06 -2.09 7.38 22.54 0.17 -1.92 16 17 C -0.13 -3.12 10.03 22.23 0.22 -2.90 16 18 C -0.02 -0.38 9.47 22.34 0.21 -0.17 16 19 C -0.66 -19.31 4.87 22.23 0.11 -19.20 16 20 S 2.49 63.25 4.67 -56.49 -0.26 62.99 16 21 O -0.98 -33.18 17.11 -127.65 -2.18 -35.36 16 22 O -0.96 -26.38 17.11 -127.65 -2.18 -28.56 16 23 C -0.53 -8.26 3.48 30.59 0.11 -8.15 16 24 C -0.16 -2.88 8.89 71.98 0.64 -2.24 16 25 C -0.16 -1.89 9.20 71.98 0.66 -1.23 16 26 C 0.00 -0.06 8.09 22.54 0.18 0.12 16 27 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.06 1.53 8.13 -2.39 -0.02 1.51 16 29 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.03 1.17 6.33 -2.39 -0.02 1.15 16 31 H 0.08 3.62 5.87 -2.39 -0.01 3.61 16 32 H 0.10 4.76 5.80 -2.39 -0.01 4.75 16 33 H 0.06 2.25 4.93 -2.39 -0.01 2.24 16 34 H 0.27 12.31 8.31 -92.71 -0.77 11.54 16 35 H 0.15 4.92 3.66 -2.91 -0.01 4.91 16 36 H 0.18 2.63 8.06 -2.91 -0.02 2.61 16 37 H 0.18 2.80 7.55 -2.91 -0.02 2.78 16 38 H 0.18 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.06 1.38 6.58 -2.38 -0.02 1.36 16 40 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 42 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.12 5.00 7.56 -2.91 -0.02 4.98 16 Total: -1.00 -77.38 368.58 2.09 -75.29 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: 1.01 Total: 24.31 kcal Atomic # 6 Polarization: -42.57 SS G_CDS: 5.29 Total: -37.28 kcal Atomic # 7 Polarization: -64.53 SS G_CDS: -1.53 Total: -66.06 kcal Atomic # 8 Polarization: -98.42 SS G_CDS: -4.43 Total: -102.85 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Atomic # 16 Polarization: 63.25 SS G_CDS: -0.26 Total: 62.99 kcal Total: -77.38 2.09 -75.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547453532.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.892 kcal (2) G-P(sol) polarization free energy of solvation -77.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds