Wall clock time and date at job start Tue Mar 31 2020 22:14:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53010 * 109.47063 * 2 1 4 4 H 1.09000 * 109.46555 * 54.99848 * 3 2 1 5 5 C 1.50701 * 109.46983 * 175.00017 * 3 2 1 6 6 H 1.07993 * 119.99740 * 120.00272 * 5 3 2 7 7 C 1.37876 * 119.99829 * 300.00034 * 5 3 2 8 8 N 1.31516 * 119.99548 * 180.02562 * 7 5 3 9 9 Si 1.86796 * 120.00300 * 359.97438 * 7 5 3 10 10 H 1.48509 * 109.47119 * 90.00163 * 9 7 5 11 11 H 1.48496 * 109.47499 * 210.00288 * 9 7 5 12 12 H 1.48504 * 109.47164 * 330.00477 * 9 7 5 13 13 N 1.46499 * 109.47022 * 295.00107 * 3 2 1 14 14 C 1.34776 * 120.00288 * 84.99618 * 13 3 2 15 15 O 1.21561 * 119.99915 * 0.02562 * 14 13 3 16 16 C 1.47842 * 120.00196 * 179.97438 * 14 13 3 17 17 C 1.39595 * 120.14467 * 0.02562 * 16 14 13 18 18 C 1.37938 * 119.85548 * 179.97438 * 17 16 14 19 19 C 1.38386 * 120.14240 * 359.75773 * 18 17 16 20 20 C 1.38345 * 120.29089 * 0.50061 * 19 18 17 21 21 S 1.76196 * 119.92353 * 179.77049 * 20 19 18 22 22 O 1.42098 * 104.27468 * 153.65835 * 21 20 19 23 23 O 1.42101 * 104.27984 * 25.79659 * 21 20 19 24 24 C 1.81404 * 104.44877 * 269.72461 * 21 20 19 25 25 C 1.53002 * 109.46960 * 305.00383 * 24 21 20 26 26 C 1.53000 * 109.46946 * 185.00453 * 24 21 20 27 27 C 1.37973 * 120.14517 * 359.49638 * 20 19 18 28 28 H 1.08996 * 109.46670 * 300.00101 * 1 2 3 29 29 H 1.09002 * 109.46992 * 59.99950 * 1 2 3 30 30 H 1.08999 * 109.46851 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47366 * 240.00175 * 2 1 3 32 32 H 1.08997 * 109.47432 * 120.00005 * 2 1 3 33 33 H 0.97002 * 119.99796 * 179.97438 * 8 7 5 34 34 H 0.97005 * 119.99876 * 264.99915 * 13 3 2 35 35 H 1.07999 * 120.07299 * 0.02562 * 17 16 14 36 36 H 1.07999 * 119.92708 * 180.02562 * 18 17 16 37 37 H 1.07997 * 119.85428 * 180.27376 * 19 18 17 38 38 H 1.09002 * 109.47124 * 65.00222 * 24 21 20 39 39 H 1.09002 * 109.47075 * 299.99314 * 25 24 21 40 40 H 1.08996 * 109.47407 * 60.00271 * 25 24 21 41 41 H 1.09000 * 109.46986 * 180.02562 * 25 24 21 42 42 H 1.09004 * 109.46724 * 180.02562 * 26 24 21 43 43 H 1.09001 * 109.47194 * 299.99756 * 26 24 21 44 44 H 1.08992 * 109.47399 * 59.99928 * 26 24 21 45 45 H 1.08003 * 120.07629 * 180.22956 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5420 1.4444 0.1238 6 1 4.1472 1.8890 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 5.4540 0.8805 1.3362 9 14 3.0964 0.1102 2.5707 10 1 2.8745 -1.3260 2.2646 11 1 3.7941 0.2361 3.8755 12 1 1.7881 0.8095 2.6395 13 7 1.6525 2.0976 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3411 2.6326 -0.4320 16 6 0.0442 3.3258 -2.6301 17 6 0.9334 3.3646 -3.7055 18 6 0.5623 3.9829 -4.8814 19 6 -0.6903 4.5595 -4.9981 20 6 -1.5743 4.5292 -3.9343 21 16 -3.1644 5.2718 -4.0914 22 8 -3.9764 4.5595 -3.1681 23 8 -3.4334 5.2323 -5.4861 24 6 -2.9219 6.9822 -3.5380 25 6 -2.3134 6.9827 -2.1341 26 6 -4.2700 7.7051 -3.5098 27 6 -1.2155 3.9140 -2.7526 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.8771 0.4827 2.1132 34 1 2.2720 2.1232 -1.9978 35 1 1.9094 2.9108 -3.6174 36 1 1.2491 4.0132 -5.7143 37 1 -0.9777 5.0385 -5.9224 38 1 -2.2491 7.4947 -4.2257 39 1 -2.9862 6.4703 -1.4464 40 1 -1.3530 6.4677 -2.1542 41 1 -2.1681 8.0104 -1.8015 42 1 -4.1242 8.7330 -3.1777 43 1 -4.7035 7.7048 -4.5099 44 1 -4.9427 7.1927 -2.8222 45 1 -1.9078 3.8877 -1.9241 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547779141.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:14 Heat of formation + Delta-G solvation = -82.504585 kcal Electronic energy + Delta-G solvation = -27708.970669 eV Core-core repulsion = 23818.943336 eV Total energy + Delta-G solvation = -3890.027333 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.12631 -38.38759 -37.37644 -36.17706 -35.43371 -35.42084 -32.80124 -32.04205 -31.39760 -30.81046 -27.78217 -27.58015 -24.23138 -23.60831 -22.76427 -22.53392 -21.06246 -19.87917 -19.12850 -18.42837 -17.14450 -16.89641 -16.27764 -16.17727 -15.89139 -15.77615 -15.14240 -14.93067 -14.51654 -14.40976 -14.07854 -13.78317 -13.59267 -13.52976 -13.20684 -12.96166 -12.75582 -12.54764 -12.33227 -12.31524 -12.23588 -11.97436 -11.89638 -11.84572 -11.83055 -11.76404 -11.14534 -11.06767 -10.95988 -10.67655 -10.57984 -9.98018 -9.67232 -9.61715 -9.33256 -9.28376 -9.20259 -8.81691 -8.17769 -6.27000 -4.30221 -0.24441 0.49088 0.87194 2.56391 2.82589 3.20029 3.32219 3.36867 3.53926 3.65108 3.82034 3.84119 4.10152 4.26582 4.27920 4.57939 4.63176 4.64877 4.82637 5.00737 5.04647 5.06758 5.07301 5.19925 5.24108 5.34876 5.40628 5.52789 5.61226 5.72378 5.77262 5.92587 5.98664 5.99616 6.02909 6.14429 6.49033 6.61724 6.66390 6.78395 6.91622 7.16371 7.22484 7.42795 8.04513 8.40850 8.66820 8.78555 9.33313 10.84891 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020813 B = 0.002846 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.992895 B = 9834.772755 C =10137.508396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.139 4.139 3 C 0.242 3.758 4 H 0.052 0.948 5 C -0.537 4.537 6 H 0.080 0.920 7 C 0.080 3.920 8 N -0.891 5.891 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.294 1.294 12 H -0.259 1.259 13 N -0.692 5.692 14 C 0.543 3.457 15 O -0.539 6.539 16 C -0.141 4.141 17 C -0.034 4.034 18 C -0.144 4.144 19 C -0.010 4.010 20 C -0.669 4.669 21 S 2.495 3.505 22 O -0.929 6.929 23 O -0.940 6.940 24 C -0.567 4.567 25 C -0.147 4.147 26 C -0.146 4.146 27 C 0.031 3.969 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.033 0.967 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.268 0.732 34 H 0.394 0.606 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.877 12.669 -13.236 22.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.178 4.178 3 C 0.139 3.861 4 H 0.070 0.930 5 C -0.575 4.575 6 H 0.098 0.902 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.184 1.184 13 N -0.340 5.340 14 C 0.328 3.672 15 O -0.419 6.419 16 C -0.145 4.145 17 C -0.053 4.053 18 C -0.163 4.163 19 C -0.030 4.030 20 C -0.755 4.755 21 S 2.675 3.325 22 O -0.926 6.926 23 O -0.937 6.937 24 C -0.677 4.677 25 C -0.205 4.205 26 C -0.204 4.204 27 C 0.011 3.989 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.228 0.772 35 H 0.157 0.843 36 H 0.157 0.843 37 H 0.160 0.840 38 H 0.158 0.842 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -14.967 12.166 -12.712 23.101 hybrid contribution 0.975 -0.280 0.505 1.133 sum -13.992 11.886 -12.207 22.047 Atomic orbital electron populations 1.21891 0.96833 0.99244 1.02323 1.22298 0.94449 0.99792 1.01239 1.19219 0.95766 0.88597 0.82503 0.93023 1.21011 0.88451 1.40091 1.07977 0.90207 1.24825 0.94882 0.95054 0.97669 1.69863 1.08702 1.44333 1.29847 0.86904 0.80973 0.80018 0.80872 1.20167 1.22103 1.18383 1.46134 1.14396 1.55343 1.18164 1.18083 0.82961 0.79385 0.86753 1.90768 1.51415 1.59965 1.39726 1.20402 0.95665 1.02746 0.95669 1.21799 0.98776 0.92814 0.91897 1.21248 0.96879 0.99898 0.98293 1.21078 0.92134 0.93350 0.96395 1.30462 1.24181 1.19089 1.01798 1.05708 0.74540 0.77361 0.74923 1.93588 1.65107 1.69133 1.64774 1.93557 1.83284 1.86503 1.30326 1.30005 1.06867 1.22028 1.08808 1.21747 1.01745 1.05139 0.91906 1.21689 0.92636 1.02448 1.03654 1.21062 0.94641 0.88015 0.95179 0.92729 0.92971 0.94810 0.92242 0.92618 0.92205 0.77187 0.84318 0.84348 0.83950 0.84232 0.90201 0.90714 0.90036 0.89619 0.90980 0.90479 0.82815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.51 37.16 0.32 -2.61 16 2 C -0.14 -3.04 5.11 -26.72 -0.14 -3.17 16 3 C 0.24 5.57 1.83 -69.08 -0.13 5.44 16 4 H 0.05 1.31 6.63 -51.93 -0.34 0.97 16 5 C -0.54 -14.06 9.31 -34.44 -0.32 -14.38 16 6 H 0.08 2.18 7.98 -52.49 -0.42 1.76 16 7 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 8 N -0.89 -25.84 13.96 55.43 0.77 -25.07 16 9 Si 0.88 21.35 24.41 -169.99 -4.15 17.20 16 10 H -0.27 -6.46 6.83 56.52 0.39 -6.08 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 12 H -0.26 -6.21 6.53 56.52 0.37 -5.84 16 13 N -0.69 -13.16 4.97 -55.87 -0.28 -13.44 16 14 C 0.54 9.98 6.34 -12.33 -0.08 9.90 16 15 O -0.54 -11.50 13.48 5.31 0.07 -11.43 16 16 C -0.14 -2.05 5.87 -104.97 -0.62 -2.66 16 17 C -0.03 -0.39 9.54 -39.19 -0.37 -0.77 16 18 C -0.14 -1.36 10.03 -39.64 -0.40 -1.76 16 19 C -0.01 -0.10 9.47 -39.49 -0.37 -0.48 16 20 C -0.67 -7.54 4.87 -39.64 -0.19 -7.73 16 21 S 2.49 25.92 4.67 -107.50 -0.50 25.42 16 22 O -0.93 -12.67 17.11 -57.54 -0.98 -13.66 16 23 O -0.94 -11.56 17.11 -57.54 -0.98 -12.55 16 24 C -0.57 -3.82 3.48 -26.73 -0.09 -3.91 16 25 C -0.15 -1.07 8.89 37.16 0.33 -0.74 16 26 C -0.15 -0.84 9.20 37.16 0.34 -0.50 16 27 C 0.03 0.42 7.99 -39.19 -0.31 0.11 16 28 H 0.05 1.15 7.84 -51.93 -0.41 0.74 16 29 H 0.05 1.03 5.65 -51.93 -0.29 0.74 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.06 1.28 3.22 -51.93 -0.17 1.11 16 33 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.39 6.45 6.57 -40.82 -0.27 6.18 16 35 H 0.14 1.38 6.41 -52.49 -0.34 1.04 16 36 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.14 1.04 7.55 -52.49 -0.40 0.65 16 38 H 0.14 0.61 8.14 -51.92 -0.42 0.19 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.58 6.58 -51.93 -0.34 0.23 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 45 H 0.15 2.17 7.16 -52.48 -0.38 1.79 16 LS Contribution 369.17 15.07 5.56 5.56 Total: -1.00 -34.82 369.17 -8.96 -43.78 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -6.34 Total: 5.36 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: -2.13 Total: -21.18 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.50 Total: -38.51 kcal Atomic # 8 Polarization: -35.74 SS G_CDS: -1.90 Total: -37.63 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.15 Total: 17.20 kcal Atomic # 16 Polarization: 25.92 SS G_CDS: -0.50 Total: 25.42 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.82 -8.96 -43.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547779141.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.722 kcal (2) G-P(sol) polarization free energy of solvation -34.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds