Wall clock time and date at job start Tue Mar 31 2020 22:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47388 * 2 1 4 4 N 1.46507 * 109.46994 * 119.99775 * 2 1 3 5 5 C 1.46502 * 120.00017 * 300.00298 * 4 2 1 6 6 C 1.50701 * 109.46803 * 269.99536 * 5 4 2 7 7 H 1.08007 * 119.99711 * 0.02562 * 6 5 4 8 8 C 1.37868 * 119.99956 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00422 * 0.02562 * 8 6 5 10 10 Si 1.86811 * 120.00144 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47039 * 59.99795 * 10 8 6 12 12 H 1.48497 * 109.46999 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46795 * 300.00130 * 10 8 6 14 14 C 1.34776 * 119.99890 * 119.99526 * 4 2 1 15 15 O 1.21280 * 119.99824 * 180.02562 * 14 4 2 16 16 C 1.50702 * 119.99914 * 0.02562 * 14 4 2 17 17 C 1.50702 * 109.47027 * 179.97438 * 16 14 4 18 18 C 1.38260 * 119.99950 * 269.01016 * 17 16 14 19 19 C 1.38211 * 120.00073 * 180.02562 * 18 17 16 20 20 C 1.38258 * 120.00058 * 359.96198 * 19 18 17 21 21 C 1.38218 * 119.99697 * 359.97321 * 20 19 18 22 22 C 1.38207 * 120.00234 * 89.18039 * 17 16 14 23 23 S 1.76205 * 119.99832 * 0.04282 * 22 17 16 24 24 C 1.81403 * 104.45071 * 68.45388 * 23 22 17 25 25 O 1.42101 * 104.27463 * 184.52589 * 23 22 17 26 26 O 1.42096 * 104.27819 * 312.38223 * 23 22 17 27 27 H 1.09005 * 109.47147 * 300.00281 * 1 2 3 28 28 H 1.09004 * 109.47183 * 59.99651 * 1 2 3 29 29 H 1.08995 * 109.47347 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47359 * 239.99518 * 2 1 3 31 31 H 1.08996 * 109.47403 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47234 * 299.99835 * 3 2 1 33 33 H 1.09005 * 109.47205 * 59.99755 * 3 2 1 34 34 H 1.08999 * 109.47292 * 29.99358 * 5 4 2 35 35 H 1.08997 * 109.46775 * 149.99888 * 5 4 2 36 36 H 0.96998 * 120.00906 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.47285 * 59.99555 * 16 14 4 38 38 H 1.09000 * 109.47270 * 299.99493 * 16 14 4 39 39 H 1.08003 * 119.99563 * 0.02562 * 18 17 16 40 40 H 1.08001 * 120.00206 * 179.97438 * 19 18 17 41 41 H 1.07993 * 120.00423 * 180.02562 * 20 19 18 42 42 H 1.08007 * 119.99759 * 180.02562 * 21 20 19 43 43 H 1.09001 * 109.46655 * 66.31809 * 24 23 22 44 44 H 1.08995 * 109.47204 * 186.31324 * 24 23 22 45 45 H 1.08999 * 109.46775 * 306.31922 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.6643 -0.1901 2.5268 6 6 2.7031 0.8018 2.9831 7 1 3.5427 1.0362 2.3454 8 6 2.5811 1.4108 4.2140 9 7 1.5584 1.1258 4.9902 10 14 3.8683 2.6409 4.7793 11 1 3.9236 3.7747 3.8219 12 1 3.5096 3.1482 6.1280 13 1 5.1954 1.9770 4.8374 14 6 2.7931 -1.7865 1.0726 15 8 3.1969 -2.3584 2.0629 16 6 3.1575 -2.3011 -0.2961 17 6 4.0242 -3.5261 -0.1578 18 6 5.4002 -3.3981 -0.1147 19 6 6.1952 -4.5217 0.0116 20 6 5.6144 -5.7735 0.0957 21 6 4.2388 -5.9013 0.0539 22 6 3.4438 -4.7779 -0.0776 23 16 1.6904 -4.9415 -0.1381 24 6 1.2511 -4.4796 -1.8365 25 8 1.4602 -6.3270 0.0773 26 8 1.2157 -3.9682 0.7819 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 0.6903 0.2975 2.4844 35 1 1.6237 -1.0226 3.2292 36 1 1.4723 1.5545 5.8560 37 1 3.7027 -1.5303 -0.8408 38 1 2.2493 -2.5579 -0.8414 39 1 5.8538 -2.4202 -0.1798 40 1 7.2700 -4.4218 0.0449 41 1 6.2355 -6.6514 0.1948 42 1 3.7850 -6.8793 0.1200 43 1 1.6545 -5.2178 -2.5296 44 1 0.1661 -4.4443 -1.9343 45 1 1.6688 -3.4993 -2.0660 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000550569528.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:09 Heat of formation + Delta-G solvation = -66.824730 kcal Electronic energy + Delta-G solvation = -28979.622176 eV Core-core repulsion = 25090.274773 eV Total energy + Delta-G solvation = -3889.347403 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.89258 -38.56446 -37.06772 -35.86130 -35.77193 -33.18793 -32.58247 -31.28811 -30.71013 -29.72482 -28.47070 -26.74527 -26.37057 -23.29053 -22.99899 -21.80296 -21.04984 -19.04397 -18.13567 -17.47543 -16.79255 -16.45220 -16.28221 -16.12290 -15.84313 -14.97069 -14.94045 -14.49309 -14.25331 -14.12900 -13.63510 -13.46521 -13.43288 -13.28427 -13.02835 -12.69528 -12.59219 -12.31053 -12.19178 -11.98489 -11.82123 -11.66701 -11.57058 -11.48860 -11.32404 -11.07036 -11.01846 -10.85454 -10.77167 -10.54979 -10.45886 -10.29162 -9.93945 -9.45254 -9.36029 -9.04202 -8.61212 -8.32852 -7.47374 -5.93891 -3.97172 0.01668 0.83245 1.26758 2.84375 3.35212 3.38262 3.40518 3.42937 3.58532 3.83978 4.06087 4.14999 4.48539 4.50874 4.54679 4.65795 4.83078 4.88074 5.05829 5.15736 5.19475 5.32579 5.35945 5.39865 5.41198 5.53428 5.64500 5.71181 5.73505 5.87424 6.04845 6.05742 6.22449 6.25704 6.31653 6.33225 6.41768 6.69058 6.80887 7.00411 7.25844 7.65253 7.73685 8.03862 8.36969 8.60920 9.02823 9.28504 9.66428 11.14035 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013460 B = 0.004223 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.736648 B = 6628.722568 C = 7423.547415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.133 3.867 3 C -0.158 4.158 4 N -0.590 5.590 5 C 0.250 3.750 6 C -0.518 4.518 7 H 0.056 0.944 8 C 0.060 3.940 9 N -0.895 5.895 10 Si 0.893 3.107 11 H -0.278 1.278 12 H -0.287 1.287 13 H -0.278 1.278 14 C 0.530 3.470 15 O -0.523 6.523 16 C -0.138 4.138 17 C 0.042 3.958 18 C -0.125 4.125 19 C -0.064 4.064 20 C -0.146 4.146 21 C -0.023 4.023 22 C -0.646 4.646 23 S 2.486 3.514 24 C -0.663 4.663 25 O -0.944 6.944 26 O -0.904 6.904 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.082 0.918 34 H 0.033 0.967 35 H 0.044 0.956 36 H 0.262 0.738 37 H 0.110 0.890 38 H 0.087 0.913 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.142 0.858 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.685 -9.874 -19.541 22.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.028 3.972 3 C -0.216 4.216 4 N -0.322 5.322 5 C 0.131 3.869 6 C -0.557 4.557 7 H 0.074 0.926 8 C -0.142 4.142 9 N -0.534 5.534 10 Si 0.721 3.279 11 H -0.204 1.204 12 H -0.213 1.213 13 H -0.204 1.204 14 C 0.315 3.685 15 O -0.398 6.398 16 C -0.178 4.178 17 C 0.040 3.960 18 C -0.144 4.144 19 C -0.082 4.082 20 C -0.165 4.165 21 C -0.042 4.042 22 C -0.733 4.733 23 S 2.664 3.336 24 C -0.811 4.811 25 O -0.941 6.941 26 O -0.901 6.901 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.128 0.872 38 H 0.105 0.895 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.160 0.840 43 H 0.150 0.850 44 H 0.152 0.848 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.261 -10.373 -18.137 21.016 hybrid contribution 1.384 1.073 -0.235 1.767 sum 3.645 -9.300 -18.372 20.912 Atomic orbital electron populations 1.22185 0.95613 1.02122 1.02342 1.20971 0.94293 0.93988 0.87978 1.22158 1.01232 0.95833 1.02333 1.48133 1.49337 1.26379 1.08384 1.19199 0.95587 0.94882 0.77272 1.21429 1.08881 1.23347 1.02010 0.92564 1.24917 0.95684 0.97160 0.96405 1.69925 1.29504 1.43312 1.10678 0.86648 0.82152 0.81333 0.77758 1.20370 1.21313 1.20385 1.19341 0.79511 0.80807 0.88795 1.90678 1.53108 1.57188 1.38872 1.21323 0.99578 0.96811 1.00091 1.19005 0.94371 0.91547 0.91049 1.21119 0.92882 0.99267 1.01122 1.21399 1.00079 0.92594 0.94137 1.21225 0.94877 0.97803 1.02595 1.20898 0.93828 0.97379 0.92102 1.30249 1.25480 0.99093 1.18494 1.05692 0.74999 0.75258 0.77630 1.30447 1.12582 1.12949 1.25165 1.93540 1.84416 1.31782 1.84387 1.93748 1.78610 1.61099 1.56619 0.91186 0.92507 0.92497 0.91328 0.92843 0.93386 0.89940 0.94880 0.93830 0.92827 0.87230 0.89506 0.85135 0.85354 0.85290 0.83990 0.84967 0.84783 0.84903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.17 37.16 0.34 -2.11 16 2 C 0.13 2.16 3.17 -67.93 -0.22 1.94 16 3 C -0.16 -2.55 8.47 37.16 0.31 -2.23 16 4 N -0.59 -12.71 2.39 -167.47 -0.40 -13.11 16 5 C 0.25 6.65 4.60 -5.19 -0.02 6.63 16 6 C -0.52 -14.56 7.83 -34.44 -0.27 -14.83 16 7 H 0.06 1.56 7.63 -52.48 -0.40 1.16 16 8 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 10 Si 0.89 22.03 29.54 -169.99 -5.02 17.00 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 14 C 0.53 11.33 5.82 -10.98 -0.06 11.27 16 15 O -0.52 -13.76 15.31 -1.12 -0.02 -13.77 16 16 C -0.14 -2.02 3.40 -29.03 -0.10 -2.12 16 17 C 0.04 0.61 4.36 -104.62 -0.46 0.15 16 18 C -0.13 -1.66 9.70 -39.58 -0.38 -2.05 16 19 C -0.06 -0.73 10.05 -39.58 -0.40 -1.13 16 20 C -0.15 -1.64 10.05 -39.58 -0.40 -2.04 16 21 C -0.02 -0.29 9.50 -39.58 -0.38 -0.67 16 22 C -0.65 -9.07 5.59 -39.59 -0.22 -9.29 16 23 S 2.49 32.97 5.15 -107.50 -0.55 32.42 16 24 C -0.66 -4.86 10.44 101.05 1.05 -3.81 16 25 O -0.94 -14.31 16.75 -57.54 -0.96 -15.28 16 26 O -0.90 -16.39 14.38 -61.87 -0.89 -17.28 16 27 H 0.07 1.20 6.66 -51.93 -0.35 0.86 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.86 5.76 -51.93 -0.30 0.57 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.60 6.92 -51.93 -0.36 1.24 16 34 H 0.03 0.89 6.43 -51.93 -0.33 0.56 16 35 H 0.04 1.35 7.42 -51.93 -0.39 0.97 16 36 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 37 H 0.11 1.27 7.72 -51.93 -0.40 0.87 16 38 H 0.09 1.00 3.57 -51.93 -0.19 0.82 16 39 H 0.13 1.55 8.06 -52.48 -0.42 1.12 16 40 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.14 1.59 7.22 -52.48 -0.38 1.21 16 43 H 0.13 0.66 8.14 -51.92 -0.42 0.24 16 44 H 0.13 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.13 0.80 5.91 -51.92 -0.31 0.49 16 LS Contribution 372.31 15.07 5.61 5.61 Total: -1.00 -39.36 372.31 -9.13 -48.49 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -6.34 Total: 0.85 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: -1.29 Total: -18.66 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.34 Total: -39.38 kcal Atomic # 8 Polarization: -44.46 SS G_CDS: -1.87 Total: -46.33 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 32.97 SS G_CDS: -0.55 Total: 32.42 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -39.36 -9.13 -48.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000550569528.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.337 kcal (2) G-P(sol) polarization free energy of solvation -39.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds