Wall clock time and date at job start Tue Mar 31 2020 22:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47388 * 2 1 4 4 N 1.46507 * 109.46994 * 119.99775 * 2 1 3 5 5 C 1.46502 * 120.00017 * 300.00298 * 4 2 1 6 6 C 1.50701 * 109.46803 * 269.99536 * 5 4 2 7 7 H 1.08007 * 119.99711 * 0.02562 * 6 5 4 8 8 C 1.37868 * 119.99956 * 179.97438 * 6 5 4 9 9 N 1.31511 * 120.00422 * 0.02562 * 8 6 5 10 10 Si 1.86811 * 120.00144 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47039 * 59.99795 * 10 8 6 12 12 H 1.48497 * 109.46999 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46795 * 300.00130 * 10 8 6 14 14 C 1.34776 * 119.99890 * 119.99526 * 4 2 1 15 15 O 1.21280 * 119.99824 * 180.02562 * 14 4 2 16 16 C 1.50702 * 119.99914 * 0.02562 * 14 4 2 17 17 C 1.50702 * 109.47027 * 179.97438 * 16 14 4 18 18 C 1.38260 * 119.99950 * 269.01016 * 17 16 14 19 19 C 1.38211 * 120.00073 * 180.02562 * 18 17 16 20 20 C 1.38258 * 120.00058 * 359.96198 * 19 18 17 21 21 C 1.38218 * 119.99697 * 359.97321 * 20 19 18 22 22 C 1.38207 * 120.00234 * 89.18039 * 17 16 14 23 23 S 1.76205 * 119.99832 * 0.04282 * 22 17 16 24 24 C 1.81403 * 104.45071 * 68.45388 * 23 22 17 25 25 O 1.42101 * 104.27463 * 184.52589 * 23 22 17 26 26 O 1.42096 * 104.27819 * 312.38223 * 23 22 17 27 27 H 1.09005 * 109.47147 * 300.00281 * 1 2 3 28 28 H 1.09004 * 109.47183 * 59.99651 * 1 2 3 29 29 H 1.08995 * 109.47347 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47359 * 239.99518 * 2 1 3 31 31 H 1.08996 * 109.47403 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47234 * 299.99835 * 3 2 1 33 33 H 1.09005 * 109.47205 * 59.99755 * 3 2 1 34 34 H 1.08999 * 109.47292 * 29.99358 * 5 4 2 35 35 H 1.08997 * 109.46775 * 149.99888 * 5 4 2 36 36 H 0.96998 * 120.00906 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.47285 * 59.99555 * 16 14 4 38 38 H 1.09000 * 109.47270 * 299.99493 * 16 14 4 39 39 H 1.08003 * 119.99563 * 0.02562 * 18 17 16 40 40 H 1.08001 * 120.00206 * 179.97438 * 19 18 17 41 41 H 1.07993 * 120.00423 * 180.02562 * 20 19 18 42 42 H 1.08007 * 119.99759 * 180.02562 * 21 20 19 43 43 H 1.09001 * 109.46655 * 66.31809 * 24 23 22 44 44 H 1.08995 * 109.47204 * 186.31324 * 24 23 22 45 45 H 1.08999 * 109.46775 * 306.31922 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.6643 -0.1901 2.5268 6 6 2.7031 0.8018 2.9831 7 1 3.5427 1.0362 2.3454 8 6 2.5811 1.4108 4.2140 9 7 1.5584 1.1258 4.9902 10 14 3.8683 2.6409 4.7793 11 1 3.9236 3.7747 3.8219 12 1 3.5096 3.1482 6.1280 13 1 5.1954 1.9770 4.8374 14 6 2.7931 -1.7865 1.0726 15 8 3.1969 -2.3584 2.0629 16 6 3.1575 -2.3011 -0.2961 17 6 4.0242 -3.5261 -0.1578 18 6 5.4002 -3.3981 -0.1147 19 6 6.1952 -4.5217 0.0116 20 6 5.6144 -5.7735 0.0957 21 6 4.2388 -5.9013 0.0539 22 6 3.4438 -4.7779 -0.0776 23 16 1.6904 -4.9415 -0.1381 24 6 1.2511 -4.4796 -1.8365 25 8 1.4602 -6.3270 0.0773 26 8 1.2157 -3.9682 0.7819 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 0.6903 0.2975 2.4844 35 1 1.6237 -1.0226 3.2292 36 1 1.4723 1.5545 5.8560 37 1 3.7027 -1.5303 -0.8408 38 1 2.2493 -2.5579 -0.8414 39 1 5.8538 -2.4202 -0.1798 40 1 7.2700 -4.4218 0.0449 41 1 6.2355 -6.6514 0.1948 42 1 3.7850 -6.8793 0.1200 43 1 1.6545 -5.2178 -2.5296 44 1 0.1661 -4.4443 -1.9343 45 1 1.6688 -3.4993 -2.0660 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000550569528.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:08 Heat of formation + Delta-G solvation = -95.906873 kcal Electronic energy + Delta-G solvation = -28980.883273 eV Core-core repulsion = 25090.274773 eV Total energy + Delta-G solvation = -3890.608500 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.16466 -39.83480 -38.18264 -37.38245 -36.94925 -34.96700 -34.04395 -32.31820 -32.21197 -30.40213 -30.04896 -28.17304 -27.81864 -24.92225 -24.18579 -23.06400 -22.38618 -20.07499 -19.57932 -18.55169 -18.51297 -18.22363 -17.43571 -17.12654 -16.98567 -16.62165 -16.10626 -15.96047 -15.57693 -15.35000 -14.85852 -14.77499 -14.44957 -14.28996 -14.05578 -13.94967 -13.82462 -13.65210 -13.31881 -13.24614 -13.19231 -13.09548 -12.96891 -12.78942 -12.78786 -12.66123 -12.50330 -12.21055 -12.14692 -12.03692 -11.94341 -11.60065 -11.48584 -11.43923 -10.57813 -10.55666 -10.26621 -9.79399 -9.27534 -8.14642 -6.27587 -0.88253 -0.13170 0.30359 1.35805 1.40751 1.47535 1.88290 2.06093 2.31106 2.42985 2.66986 2.96679 3.14038 3.25197 3.43556 3.69064 3.85688 3.90431 4.05809 4.08089 4.11986 4.21823 4.32076 4.37068 4.44776 4.47812 4.55389 4.78409 4.89120 4.91140 4.91950 4.97801 5.09027 5.12038 5.14477 5.18851 5.33178 5.33631 5.40855 5.51276 5.65160 5.71012 5.91537 5.99714 6.17183 6.80022 6.97863 7.37137 7.68716 8.92453 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013460 B = 0.004223 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.736648 B = 6628.722568 C = 7423.547415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.120 3.880 3 C -0.152 4.152 4 N -0.598 5.598 5 C 0.269 3.731 6 C -0.521 4.521 7 H 0.058 0.942 8 C 0.001 3.999 9 N -0.935 5.935 10 Si 0.964 3.036 11 H -0.257 1.257 12 H -0.283 1.283 13 H -0.279 1.279 14 C 0.519 3.481 15 O -0.588 6.588 16 C -0.128 4.128 17 C 0.017 3.983 18 C -0.140 4.140 19 C -0.067 4.067 20 C -0.144 4.144 21 C -0.043 4.043 22 C -0.657 4.657 23 S 2.467 3.533 24 C -0.626 4.626 25 O -0.980 6.980 26 O -0.969 6.969 27 H 0.033 0.967 28 H 0.102 0.898 29 H 0.056 0.944 30 H 0.120 0.880 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.039 0.961 34 H 0.020 0.980 35 H -0.018 1.018 36 H 0.263 0.737 37 H 0.148 0.852 38 H 0.119 0.881 39 H 0.141 0.859 40 H 0.159 0.841 41 H 0.160 0.840 42 H 0.148 0.852 43 H 0.166 0.834 44 H 0.161 0.839 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.183 -9.215 -23.855 25.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.018 3.982 3 C -0.210 4.210 4 N -0.329 5.329 5 C 0.148 3.852 6 C -0.560 4.560 7 H 0.076 0.924 8 C -0.196 4.196 9 N -0.575 5.575 10 Si 0.788 3.212 11 H -0.181 1.181 12 H -0.208 1.208 13 H -0.205 1.205 14 C 0.308 3.692 15 O -0.468 6.468 16 C -0.167 4.167 17 C 0.015 3.985 18 C -0.159 4.159 19 C -0.085 4.085 20 C -0.162 4.162 21 C -0.061 4.061 22 C -0.744 4.744 23 S 2.652 3.348 24 C -0.780 4.780 25 O -0.977 6.977 26 O -0.966 6.966 27 H 0.052 0.948 28 H 0.120 0.880 29 H 0.075 0.925 30 H 0.138 0.862 31 H 0.067 0.933 32 H 0.111 0.889 33 H 0.059 0.941 34 H 0.038 0.962 35 H 0.000 1.000 36 H 0.072 0.928 37 H 0.165 0.835 38 H 0.137 0.863 39 H 0.159 0.841 40 H 0.177 0.823 41 H 0.178 0.822 42 H 0.166 0.834 43 H 0.185 0.815 44 H 0.179 0.821 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.761 -9.713 -22.462 24.759 hybrid contribution 0.889 0.776 1.019 1.559 sum 4.650 -8.937 -21.442 23.691 Atomic orbital electron populations 1.22176 0.94729 1.02286 1.02752 1.21484 0.95184 0.94221 0.87353 1.22098 1.00854 0.95657 1.02421 1.48182 1.49592 1.27129 1.07998 1.18531 0.95025 0.92162 0.79526 1.21667 1.08901 1.23191 1.02250 0.92369 1.25873 0.97882 0.99316 0.96564 1.70081 1.31610 1.44727 1.11110 0.85532 0.78762 0.79169 0.77714 1.18119 1.20845 1.20493 1.20487 0.78015 0.79701 0.91026 1.90631 1.55427 1.58894 1.41882 1.21311 1.01662 0.97924 0.95849 1.19091 0.95004 0.91493 0.92899 1.21440 0.92826 1.00524 1.01071 1.21803 1.01628 0.92058 0.93029 1.21648 0.94611 0.99078 1.00890 1.21179 0.94803 0.97511 0.92638 1.30317 1.25791 0.99498 1.18827 1.05872 0.74607 0.73990 0.80343 1.30182 1.14658 1.15015 1.18170 1.93485 1.84609 1.33159 1.86452 1.93692 1.79453 1.62046 1.61418 0.94796 0.87971 0.92507 0.86192 0.93346 0.88918 0.94141 0.96172 1.00036 0.92779 0.83471 0.86342 0.84103 0.82294 0.82240 0.83402 0.81539 0.82106 0.82499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.58 9.17 71.98 0.66 -3.92 16 2 C 0.12 3.67 3.17 44.99 0.14 3.82 16 3 C -0.15 -4.62 8.47 71.98 0.61 -4.01 16 4 N -0.60 -26.36 2.39 -802.14 -1.91 -28.28 16 5 C 0.27 15.35 4.60 85.63 0.39 15.75 16 6 C -0.52 -30.58 7.83 25.60 0.20 -30.38 16 7 H 0.06 3.30 7.63 -2.91 -0.02 3.28 16 8 C 0.00 0.09 5.46 84.65 0.46 0.55 16 9 N -0.93 -59.22 13.29 21.44 0.28 -58.94 16 10 Si 0.96 46.13 29.54 68.60 2.03 48.15 16 11 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 13 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 14 C 0.52 22.63 5.82 87.66 0.51 23.14 16 15 O -0.59 -32.88 15.31 3.35 0.05 -32.83 16 16 C -0.13 -3.49 3.40 29.10 0.10 -3.39 16 17 C 0.02 0.46 4.36 -19.87 -0.09 0.38 16 18 C -0.14 -3.50 9.70 22.27 0.22 -3.28 16 19 C -0.07 -1.40 10.05 22.27 0.22 -1.17 16 20 C -0.14 -2.96 10.05 22.27 0.22 -2.74 16 21 C -0.04 -1.06 9.50 22.27 0.21 -0.85 16 22 C -0.66 -18.11 5.59 22.27 0.12 -17.98 16 23 S 2.47 64.77 5.15 -56.49 -0.29 64.48 16 24 C -0.63 -6.38 10.44 113.37 1.18 -5.19 16 25 O -0.98 -30.44 16.75 -127.65 -2.14 -32.58 16 26 O -0.97 -36.82 14.38 -123.51 -1.78 -38.60 16 27 H 0.03 1.19 6.66 -2.38 -0.02 1.17 16 28 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 30 H 0.12 2.44 5.76 -2.39 -0.01 2.43 16 31 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.04 1.56 6.92 -2.38 -0.02 1.55 16 34 H 0.02 1.18 6.43 -2.39 -0.02 1.17 16 35 H -0.02 -1.27 7.42 -2.39 -0.02 -1.29 16 36 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 37 H 0.15 2.80 7.72 -2.39 -0.02 2.78 16 38 H 0.12 2.33 3.57 -2.39 -0.01 2.32 16 39 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 40 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 41 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 42 H 0.15 3.33 7.22 -2.91 -0.02 3.31 16 43 H 0.17 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.16 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.16 0.95 5.91 -2.39 -0.01 0.94 16 Total: -1.00 -97.50 372.31 2.42 -95.09 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: 1.00 Total: 12.80 kcal Atomic # 6 Polarization: -34.47 SS G_CDS: 5.17 Total: -29.29 kcal Atomic # 7 Polarization: -85.58 SS G_CDS: -1.63 Total: -87.21 kcal Atomic # 8 Polarization: -100.15 SS G_CDS: -3.86 Total: -104.01 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.15 kcal Atomic # 16 Polarization: 64.77 SS G_CDS: -0.29 Total: 64.48 kcal Total: -97.50 2.42 -95.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000550569528.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.821 kcal (2) G-P(sol) polarization free energy of solvation -97.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds