Wall clock time and date at job start Tue Mar 31 2020 23:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08997 * 109.57876 * 2 1 4 4 C 1.53092 * 109.52655 * 120.15839 * 2 1 3 5 5 O 1.42902 * 109.41920 * 177.51233 * 4 2 1 6 6 C 1.42905 * 114.09613 * 298.84351 * 5 4 2 7 7 C 1.53093 * 109.41623 * 61.15666 * 6 5 4 8 8 C 1.53171 * 109.16212 * 302.38990 * 7 6 5 9 9 H 1.09003 * 109.54801 * 297.02659 * 8 7 6 10 10 C 1.53004 * 109.54200 * 176.84523 * 8 7 6 11 11 N 1.46499 * 109.46737 * 65.00302 * 10 8 7 12 12 S 1.65600 * 119.99951 * 164.99935 * 11 10 8 13 13 O 1.42095 * 106.40516 * 178.53704 * 12 11 10 14 14 O 1.42107 * 106.40317 * 311.45946 * 12 11 10 15 15 C 1.76201 * 107.21775 * 64.99631 * 12 11 10 16 16 C 1.38657 * 119.87614 * 90.00086 * 15 12 11 17 17 C 1.38612 * 120.50070 * 179.97438 * 16 15 12 18 18 C 1.37635 * 120.25167 * 0.02562 * 17 16 15 19 19 C 1.40694 * 119.74397 * 359.97438 * 18 17 16 20 20 C 1.41393 * 120.24942 * 180.02562 * 19 18 17 21 21 H 1.07994 * 120.00524 * 155.19092 * 20 19 18 22 22 C 1.39945 * 119.99619 * 335.19501 * 20 19 18 23 23 N 1.30819 * 120.00350 * 342.32438 * 22 20 19 24 24 Si 1.86805 * 119.99971 * 162.32083 * 22 20 19 25 25 H 1.48493 * 109.47338 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46929 * 120.00226 * 24 22 20 27 27 H 1.48503 * 109.47221 * 239.99981 * 24 22 20 28 28 C 1.37603 * 119.87857 * 269.72577 * 15 12 11 29 29 H 1.09008 * 109.47231 * 180.15958 * 1 2 3 30 30 H 1.09004 * 109.47362 * 300.15367 * 1 2 3 31 31 H 1.08997 * 109.47463 * 60.15707 * 1 2 3 32 32 H 1.09008 * 109.47937 * 57.53156 * 4 2 1 33 33 H 1.08999 * 109.49303 * 297.50618 * 4 2 1 34 34 H 1.09002 * 109.47974 * 301.16935 * 6 5 4 35 35 H 1.09007 * 109.47690 * 181.13668 * 6 5 4 36 36 H 1.08996 * 109.52323 * 182.48351 * 7 6 5 37 37 H 1.09002 * 109.51956 * 62.29716 * 7 6 5 38 38 H 1.08998 * 109.47320 * 305.00204 * 10 8 7 39 39 H 1.09004 * 109.47032 * 184.99954 * 10 8 7 40 40 H 0.96994 * 120.00368 * 344.99466 * 11 10 8 41 41 H 1.08002 * 119.74930 * 359.95865 * 16 15 12 42 42 H 1.08007 * 119.87393 * 180.02562 * 17 16 15 43 43 H 1.08003 * 120.13102 * 179.97438 * 18 17 16 44 44 H 0.97003 * 120.00627 * 180.02562 * 23 22 20 45 45 H 1.08000 * 120.12408 * 359.97438 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0416 -0.7249 1.2476 5 8 3.4694 -0.7743 1.2162 6 6 4.0043 -1.4816 0.0956 7 6 3.5715 -0.7871 -1.1983 8 6 2.0419 -0.7253 -1.2484 9 1 1.6367 -1.7369 -1.2757 10 6 1.6011 0.0367 -2.4998 11 7 1.9971 -0.7145 -3.6936 12 16 1.3404 -0.3356 -5.1659 13 8 1.9443 -1.2080 -6.1111 14 8 -0.0647 -0.2549 -4.9697 15 6 1.8800 1.2912 -5.5746 16 6 3.0578 1.4705 -6.2838 17 6 3.4941 2.7444 -6.6126 18 6 2.7609 3.8469 -6.2370 19 6 1.5641 3.6771 -5.5171 20 6 0.8021 4.8022 -5.1263 21 1 -0.2582 4.7010 -4.9481 22 6 1.4221 6.0472 -4.9706 23 7 2.7220 6.1192 -4.8425 24 14 0.3933 7.6063 -4.9457 25 1 -1.0406 7.2559 -5.1076 26 1 0.5880 8.3071 -3.6511 27 1 0.8148 8.4953 -6.0581 28 6 1.1279 2.3787 -5.1936 29 1 -0.3634 -1.0277 0.0029 30 1 -0.3634 0.5162 0.8886 31 1 -0.3634 0.5114 -0.8913 32 1 1.6432 -1.7393 1.2676 33 1 1.7159 -0.1888 2.1390 34 1 3.6315 -2.5059 0.1007 35 1 5.0926 -1.4904 0.1570 36 1 3.9415 -1.3500 -2.0552 37 1 3.9780 0.2240 -1.2225 38 1 2.0758 1.0178 -2.5138 39 1 0.5178 0.1573 -2.4891 40 1 2.6439 -1.4337 -3.6217 41 1 3.6399 0.6110 -6.5820 42 1 4.4130 2.8723 -7.1657 43 1 3.1028 4.8387 -6.4939 44 1 3.1517 6.9821 -4.7342 45 1 0.2083 2.2366 -4.6455 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586774194.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:39 Heat of formation + Delta-G solvation = -124.397978 kcal Electronic energy + Delta-G solvation = -27937.675042 eV Core-core repulsion = 24045.831075 eV Total energy + Delta-G solvation = -3891.843967 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -39.87143 -37.66225 -36.73316 -36.23790 -35.31557 -33.87038 -33.69832 -31.84773 -30.09870 -29.81447 -27.36872 -26.66316 -25.50439 -22.85805 -22.36630 -21.91001 -21.00922 -20.13064 -19.07664 -17.97427 -17.11446 -16.45327 -16.06863 -15.93920 -15.84722 -15.27468 -15.01750 -14.74195 -14.62167 -14.44550 -13.84927 -13.69894 -13.42325 -13.37682 -12.81800 -12.59899 -12.31165 -12.13658 -12.09410 -11.92137 -11.64057 -11.56637 -11.52900 -11.40092 -11.38178 -11.22527 -11.04815 -11.00880 -10.92531 -10.61738 -10.59340 -10.36638 -9.79892 -9.68107 -9.55837 -9.38070 -9.13969 -8.06444 -7.72519 -6.95079 -4.55952 1.01823 2.17346 2.60454 2.98999 3.02667 3.05676 3.55715 3.73026 3.81243 4.22072 4.41079 4.49860 4.54167 4.56348 4.75382 5.00223 5.04593 5.18942 5.25882 5.30800 5.38489 5.39954 5.44038 5.51663 5.61366 5.64186 5.76708 5.86557 5.94124 5.99960 6.02638 6.11968 6.15999 6.18081 6.32639 6.62540 6.73458 6.82659 7.01248 7.03297 7.16792 7.22328 7.36087 7.70674 7.78755 7.91874 8.38178 8.64869 8.69559 10.00467 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009891 B = 0.003905 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2830.254896 B = 7168.627974 C = 8599.046201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 H 0.086 0.914 4 C 0.068 3.932 5 O -0.384 6.384 6 C 0.061 3.939 7 C -0.155 4.155 8 C -0.089 4.089 9 H 0.079 0.921 10 C 0.121 3.879 11 N -1.121 6.121 12 S 2.690 3.310 13 O -0.978 6.978 14 O -0.972 6.972 15 C -0.631 4.631 16 C -0.146 4.146 17 C -0.121 4.121 18 C -0.117 4.117 19 C 0.092 3.908 20 C -0.460 4.460 21 H 0.083 0.917 22 C 0.076 3.924 23 N -0.794 5.794 24 Si 0.910 3.090 25 H -0.258 1.258 26 H -0.273 1.273 27 H -0.271 1.271 28 C -0.127 4.127 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.048 0.952 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.410 0.590 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.124 0.876 44 H 0.283 0.717 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.053 -9.790 9.728 13.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.142 4.142 3 H 0.105 0.895 4 C -0.009 4.009 5 O -0.302 6.302 6 C -0.015 4.015 7 C -0.193 4.193 8 C -0.109 4.109 9 H 0.097 0.903 10 C -0.005 4.005 11 N -0.879 5.879 12 S 2.785 3.215 13 O -0.968 6.968 14 O -0.962 6.962 15 C -0.723 4.723 16 C -0.167 4.167 17 C -0.141 4.141 18 C -0.137 4.137 19 C 0.089 3.911 20 C -0.490 4.490 21 H 0.101 0.899 22 C -0.142 4.142 23 N -0.419 5.419 24 Si 0.734 3.266 25 H -0.182 1.182 26 H -0.198 1.198 27 H -0.196 1.196 28 C -0.149 4.149 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.066 0.934 35 H 0.111 0.889 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.244 0.756 41 H 0.124 0.876 42 H 0.116 0.884 43 H 0.142 0.858 44 H 0.094 0.906 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.654 -9.958 9.420 13.723 hybrid contribution 0.265 1.114 -0.127 1.152 sum 0.918 -8.844 9.293 12.862 Atomic orbital electron populations 1.21859 0.94109 1.02197 1.02830 1.21791 0.96659 1.01175 0.94594 0.89519 1.22644 0.80923 0.99495 0.97861 1.87934 1.20398 1.76463 1.45451 1.22584 0.99025 0.94355 0.85571 1.22298 0.95701 1.02977 0.98276 1.21426 0.95592 0.99965 0.93943 0.90313 1.21395 1.00821 0.94963 0.83290 1.55559 1.60982 1.47554 1.23824 1.01615 0.73468 0.74555 0.71812 1.93518 1.78290 1.65395 1.59600 1.93523 1.29810 1.87564 1.85344 1.29729 1.07510 1.19579 1.15496 1.20074 0.95919 0.96908 1.03831 1.20814 0.99067 0.93085 1.01098 1.21637 0.96585 0.97880 0.97612 1.17680 0.92138 0.91708 0.89605 1.19645 0.96528 0.92121 1.40661 0.89871 1.25926 0.95100 1.01172 0.92040 1.69781 1.10391 1.27620 1.34126 0.86226 0.81235 0.80481 0.78675 1.18192 1.19841 1.19591 1.20777 0.99349 0.92086 1.02649 0.92509 0.92276 0.91254 0.93281 0.88861 0.93352 0.88913 0.90596 0.90231 0.90894 0.89863 0.75586 0.87641 0.88399 0.85792 0.90621 0.87080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.93 37.15 0.33 -1.09 16 2 C -0.12 -1.23 2.41 -90.48 -0.22 -1.45 16 3 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 4 C 0.07 0.63 6.13 37.20 0.23 0.86 16 5 O -0.38 -4.31 10.77 -35.23 -0.38 -4.69 16 6 C 0.06 0.57 6.84 37.21 0.25 0.83 16 7 C -0.15 -1.55 5.25 -26.60 -0.14 -1.69 16 8 C -0.09 -0.94 1.87 -90.43 -0.17 -1.11 16 9 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 10 C 0.12 1.61 5.45 -4.04 -0.02 1.58 16 11 N -1.12 -15.64 5.88 -10.61 -0.06 -15.71 16 12 S 2.69 49.42 5.74 -107.50 -0.62 48.80 16 13 O -0.98 -19.64 17.27 -57.17 -0.99 -20.63 16 14 O -0.97 -20.02 16.73 -57.17 -0.96 -20.97 16 15 C -0.63 -13.55 5.94 -39.66 -0.24 -13.78 16 16 C -0.15 -3.16 9.53 -39.29 -0.37 -3.53 16 17 C -0.12 -2.71 10.02 -39.66 -0.40 -3.10 16 18 C -0.12 -2.89 8.70 -38.87 -0.34 -3.23 16 19 C 0.09 2.34 5.57 -106.83 -0.60 1.74 16 20 C -0.46 -11.59 9.05 -37.74 -0.34 -11.93 16 21 H 0.08 2.02 7.91 -52.49 -0.41 1.61 16 22 C 0.08 1.80 5.14 -17.34 -0.09 1.71 16 23 N -0.79 -19.33 10.97 55.55 0.61 -18.72 16 24 Si 0.91 17.80 29.59 -169.99 -5.03 12.77 16 25 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 26 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 27 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 28 C -0.13 -2.98 9.26 -38.87 -0.36 -3.34 16 29 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.72 6.43 -51.93 -0.33 0.39 16 32 H 0.05 0.41 8.14 -51.92 -0.42 -0.02 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.68 6.99 -51.93 -0.36 0.32 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 38 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.08 1.13 5.92 -51.93 -0.31 0.82 16 40 H 0.41 4.67 7.45 -34.46 -0.26 4.41 16 41 H 0.11 2.06 7.60 -52.49 -0.40 1.67 16 42 H 0.10 1.91 8.06 -52.48 -0.42 1.49 16 43 H 0.12 3.11 6.18 -52.48 -0.32 2.78 16 44 H 0.28 6.24 8.30 -40.82 -0.34 5.90 16 45 H 0.11 2.48 7.60 -52.49 -0.40 2.08 16 LS Contribution 372.23 15.07 5.61 5.61 Total: -1.00 -30.32 372.23 -10.86 -41.19 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -6.58 Total: 9.89 kcal Atomic # 6 Polarization: -35.07 SS G_CDS: -2.47 Total: -37.53 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.55 Total: -34.43 kcal Atomic # 8 Polarization: -43.97 SS G_CDS: -2.32 Total: -46.29 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Atomic # 16 Polarization: 49.42 SS G_CDS: -0.62 Total: 48.80 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.32 -10.86 -41.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586774194.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.211 kcal (2) G-P(sol) polarization free energy of solvation -30.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds