Wall clock time and date at job start Tue Mar 31 2020 23:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.57211 * 2 1 4 4 C 1.53089 * 109.52366 * 120.15300 * 2 1 3 5 5 O 1.42913 * 109.40914 * 62.30083 * 4 2 1 6 6 C 1.42900 * 114.09679 * 61.15964 * 5 4 2 7 7 C 1.53096 * 109.41355 * 298.83690 * 6 5 4 8 8 C 1.53173 * 109.52240 * 239.84405 * 2 1 3 9 9 H 1.09006 * 109.54211 * 177.20444 * 8 2 1 10 10 C 1.52999 * 109.62094 * 56.98446 * 8 2 1 11 11 N 1.46504 * 109.47598 * 175.39975 * 10 8 2 12 12 S 1.65591 * 120.00196 * 165.00150 * 11 10 8 13 13 O 1.42100 * 106.40490 * 178.54090 * 12 11 10 14 14 O 1.42102 * 106.40358 * 311.45983 * 12 11 10 15 15 C 1.76200 * 107.22248 * 64.99665 * 12 11 10 16 16 C 1.38667 * 119.87215 * 89.99835 * 15 12 11 17 17 C 1.38612 * 120.49854 * 179.97438 * 16 15 12 18 18 C 1.37637 * 120.24769 * 359.97438 * 17 16 15 19 19 C 1.40692 * 119.74724 * 0.02562 * 18 17 16 20 20 C 1.41404 * 120.24647 * 180.02562 * 19 18 17 21 21 H 1.07998 * 119.99896 * 150.24126 * 20 19 18 22 22 C 1.39948 * 119.99672 * 330.24203 * 20 19 18 23 23 N 1.30825 * 119.99575 * 161.71825 * 22 20 19 24 24 Si 1.86796 * 120.00094 * 341.71571 * 22 20 19 25 25 H 1.48504 * 109.47060 * 95.41253 * 24 22 20 26 26 H 1.48499 * 109.47174 * 215.40894 * 24 22 20 27 27 H 1.48496 * 109.47351 * 335.41582 * 24 22 20 28 28 C 1.37592 * 119.87834 * 269.72673 * 15 12 11 29 29 H 1.09000 * 109.47101 * 180.15674 * 1 2 3 30 30 H 1.09000 * 109.47427 * 300.15966 * 1 2 3 31 31 H 1.09008 * 109.47086 * 60.15949 * 1 2 3 32 32 H 1.08994 * 109.48361 * 302.32210 * 4 2 1 33 33 H 1.08994 * 109.47952 * 182.27812 * 4 2 1 34 34 H 1.09000 * 109.48088 * 58.82386 * 6 5 4 35 35 H 1.09000 * 109.47712 * 178.85834 * 6 5 4 36 36 H 1.09004 * 109.51960 * 177.51794 * 7 6 5 37 37 H 1.08998 * 109.52004 * 297.70672 * 7 6 5 38 38 H 1.09005 * 109.47266 * 295.40033 * 10 8 2 39 39 H 1.09004 * 109.46937 * 55.39722 * 10 8 2 40 40 H 0.97000 * 119.99645 * 344.99577 * 11 10 8 41 41 H 1.07992 * 119.74669 * 359.95868 * 16 15 12 42 42 H 1.08001 * 119.87408 * 179.97438 * 17 16 15 43 43 H 1.08007 * 120.12770 * 180.02562 * 18 17 16 44 44 H 0.96996 * 119.99651 * 179.97438 * 23 22 20 45 45 H 1.07997 * 120.12809 * 0.02562 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0271 0.0000 4 6 2.0416 -0.7248 1.2476 5 8 1.6098 -2.0867 1.2163 6 6 2.0971 -2.8276 0.0957 7 6 1.5877 -2.1872 -1.1982 8 6 2.0419 -0.7252 -1.2483 9 1 3.1308 -0.6823 -1.2741 10 6 1.4735 -0.0554 -2.5009 11 7 2.0503 -0.6807 -3.6937 12 16 1.3598 -0.4278 -5.1773 13 8 2.1605 -1.1305 -6.1177 14 8 -0.0331 -0.6587 -5.0163 15 6 1.5401 1.2846 -5.5515 16 6 2.6660 1.7288 -6.2281 17 6 2.8209 3.0729 -6.5296 18 6 1.8558 3.9820 -6.1600 19 6 0.7093 3.5426 -5.4732 20 6 -0.2890 4.4675 -5.0890 21 1 -1.3192 4.1512 -5.0170 22 6 0.0579 5.7925 -4.8020 23 7 -0.8614 6.7233 -4.7986 24 14 1.8336 6.2321 -4.4238 25 1 2.5003 6.7080 -5.6625 26 1 1.8702 7.3056 -3.3984 27 1 2.5420 5.0324 -3.9102 28 6 0.5605 2.1750 -5.1764 29 1 -0.3633 -1.0277 0.0028 30 1 -0.3634 0.5163 0.8885 31 1 -0.3634 0.5114 -0.8915 32 1 1.6453 -0.2383 2.1388 33 1 3.1308 -0.6892 1.2677 34 1 3.1871 -2.8195 0.1008 35 1 1.7408 -3.8559 0.1571 36 1 1.9942 -2.7245 -2.0551 37 1 0.4989 -2.2315 -1.2224 38 1 0.3900 -0.1740 -2.5165 39 1 1.7227 1.0057 -2.4904 40 1 2.8369 -1.2428 -3.6142 41 1 3.4281 1.0224 -6.5220 42 1 3.7021 3.4079 -7.0565 43 1 1.9783 5.0288 -6.3963 44 1 -0.6210 7.6416 -4.5993 45 1 -0.3175 1.8263 -4.6531 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586774195.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:43 Heat of formation + Delta-G solvation = -119.283383 kcal Electronic energy + Delta-G solvation = -28097.417683 eV Core-core repulsion = 24205.795502 eV Total energy + Delta-G solvation = -3891.622181 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.08036 -37.96810 -36.84086 -36.26759 -35.42674 -33.83231 -33.55512 -31.72342 -30.76924 -30.21579 -27.45048 -26.76887 -25.42843 -23.34342 -22.75892 -22.42069 -20.95961 -19.50528 -18.93170 -18.08946 -17.20974 -16.47133 -16.35955 -16.08459 -16.02985 -15.49355 -15.25320 -14.94826 -14.85212 -14.54520 -14.03296 -13.75967 -13.26041 -13.20157 -12.94006 -12.89926 -12.80392 -12.29545 -12.04663 -11.91672 -11.78998 -11.75834 -11.68211 -11.59597 -11.50618 -11.34353 -11.09021 -11.02068 -10.87840 -10.60759 -10.35651 -10.33358 -10.06181 -9.81917 -9.62509 -9.47294 -9.17718 -8.32663 -7.92843 -7.13317 -4.68847 0.87662 1.85746 2.36838 2.94288 3.05447 3.12498 3.41350 3.69106 3.79070 4.06271 4.26000 4.45273 4.47318 4.56312 4.76969 4.88153 4.95401 5.10004 5.11668 5.19989 5.32400 5.39212 5.45201 5.47970 5.56520 5.65116 5.69414 5.77141 5.82705 5.90868 5.97223 6.01952 6.07056 6.13212 6.16101 6.33352 6.40737 6.53482 6.81827 6.99519 7.00083 7.11964 7.14931 7.34773 7.57363 7.72964 8.14121 8.37955 8.56801 9.88610 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011376 B = 0.004030 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.817165 B = 6945.792185 C = 8451.375251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 H 0.085 0.915 4 C 0.067 3.933 5 O -0.381 6.381 6 C 0.061 3.939 7 C -0.155 4.155 8 C -0.089 4.089 9 H 0.078 0.922 10 C 0.120 3.880 11 N -1.120 6.120 12 S 2.690 3.310 13 O -0.974 6.974 14 O -0.967 6.967 15 C -0.625 4.625 16 C -0.157 4.157 17 C -0.092 4.092 18 C -0.198 4.198 19 C 0.074 3.926 20 C -0.443 4.443 21 H 0.096 0.904 22 C 0.084 3.916 23 N -0.799 5.799 24 Si 0.908 3.092 25 H -0.269 1.269 26 H -0.287 1.287 27 H -0.244 1.244 28 C -0.105 4.105 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.412 0.588 41 H 0.111 0.889 42 H 0.103 0.897 43 H 0.106 0.894 44 H 0.288 0.712 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.624 -11.254 10.364 17.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.142 4.142 3 H 0.104 0.896 4 C -0.010 4.010 5 O -0.300 6.300 6 C -0.016 4.016 7 C -0.193 4.193 8 C -0.109 4.109 9 H 0.096 0.904 10 C -0.006 4.006 11 N -0.879 5.879 12 S 2.785 3.215 13 O -0.964 6.964 14 O -0.957 6.957 15 C -0.716 4.716 16 C -0.178 4.178 17 C -0.111 4.111 18 C -0.217 4.217 19 C 0.070 3.930 20 C -0.471 4.471 21 H 0.114 0.886 22 C -0.136 4.136 23 N -0.422 5.422 24 Si 0.734 3.266 25 H -0.195 1.195 26 H -0.214 1.214 27 H -0.168 1.168 28 C -0.127 4.127 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.110 0.890 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.090 0.910 40 H 0.245 0.755 41 H 0.129 0.871 42 H 0.121 0.879 43 H 0.124 0.876 44 H 0.098 0.902 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 6.768 -11.615 10.023 16.768 hybrid contribution 1.491 1.232 -0.069 1.936 sum 8.259 -10.383 9.954 16.586 Atomic orbital electron populations 1.21900 0.93975 1.02711 1.02276 1.21771 0.97716 1.00161 0.94565 0.89641 1.22608 0.98155 0.82323 0.97917 1.87926 1.74183 1.22503 1.45367 1.22582 0.97833 0.95545 0.85639 1.22320 1.03006 0.95670 0.98294 1.21386 1.00525 0.95091 0.93892 0.90360 1.21430 0.98810 0.96976 0.83369 1.55551 1.44827 1.64122 1.23353 1.01681 0.73287 0.74679 0.71862 1.93531 1.70530 1.72639 1.59725 1.93545 1.31461 1.85167 1.85528 1.29964 1.04448 1.22599 1.14570 1.20053 0.97031 0.95764 1.04914 1.20709 0.97834 0.93403 0.99203 1.21301 0.97819 0.98450 1.04175 1.17791 0.92096 0.92442 0.90692 1.19539 0.96288 0.92350 1.38954 0.88599 1.26166 0.99998 0.95550 0.91912 1.69684 1.36399 1.02563 1.33541 0.86359 0.82220 0.79285 0.78765 1.19453 1.21369 1.16765 1.20879 0.97215 0.93458 1.01105 0.91726 0.92566 0.91753 0.88789 0.93306 0.93374 0.88984 0.90633 0.90142 0.89691 0.90965 0.75452 0.87092 0.87904 0.87619 0.90158 0.86258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 8.36 37.16 0.31 -1.23 16 2 C -0.12 -1.14 2.79 -90.48 -0.25 -1.40 16 3 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 4 C 0.07 0.58 6.25 37.20 0.23 0.81 16 5 O -0.38 -3.90 10.19 -35.23 -0.36 -4.26 16 6 C 0.06 0.51 6.84 37.21 0.25 0.77 16 7 C -0.16 -1.43 4.90 -26.59 -0.13 -1.56 16 8 C -0.09 -0.86 2.08 -90.44 -0.19 -1.05 16 9 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 10 C 0.12 1.47 5.05 -4.04 -0.02 1.45 16 11 N -1.12 -14.38 5.57 -10.61 -0.06 -14.44 16 12 S 2.69 46.61 5.73 -107.50 -0.62 45.99 16 13 O -0.97 -18.55 17.27 -57.17 -0.99 -19.54 16 14 O -0.97 -19.07 16.73 -57.17 -0.96 -20.03 16 15 C -0.62 -12.62 5.94 -39.66 -0.24 -12.85 16 16 C -0.16 -3.15 9.53 -39.29 -0.37 -3.52 16 17 C -0.09 -1.90 10.02 -39.66 -0.40 -2.30 16 18 C -0.20 -4.53 7.18 -38.87 -0.28 -4.81 16 19 C 0.07 1.78 5.11 -106.82 -0.55 1.24 16 20 C -0.44 -11.38 9.57 -37.74 -0.36 -11.74 16 21 H 0.10 2.58 8.06 -52.49 -0.42 2.16 16 22 C 0.08 2.08 5.40 -17.34 -0.09 1.98 16 23 N -0.80 -20.24 13.93 55.55 0.77 -19.46 16 24 Si 0.91 19.37 24.52 -169.99 -4.17 15.21 16 25 H -0.27 -5.57 6.71 56.52 0.38 -5.19 16 26 H -0.29 -5.89 7.11 56.52 0.40 -5.49 16 27 H -0.24 -5.27 6.86 56.52 0.39 -4.88 16 28 C -0.11 -2.34 9.26 -38.87 -0.36 -2.70 16 29 H 0.06 0.68 6.14 -51.93 -0.32 0.36 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.70 6.50 -51.92 -0.34 0.37 16 32 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.64 7.64 -51.93 -0.40 0.24 16 37 H 0.08 0.82 6.63 -51.93 -0.34 0.47 16 38 H 0.08 1.10 6.28 -51.93 -0.33 0.77 16 39 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.41 4.19 8.39 -34.46 -0.29 3.90 16 41 H 0.11 2.00 7.60 -52.49 -0.40 1.60 16 42 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 43 H 0.11 2.38 4.73 -52.48 -0.25 2.13 16 44 H 0.29 6.57 8.30 -40.82 -0.34 6.23 16 45 H 0.12 2.53 7.60 -52.49 -0.40 2.13 16 LS Contribution 363.94 15.07 5.48 5.48 Total: -1.00 -30.34 363.94 -9.78 -40.12 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -6.46 Total: 7.83 kcal Atomic # 6 Polarization: -34.46 SS G_CDS: -2.44 Total: -36.90 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.71 Total: -33.90 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -2.30 Total: -43.82 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.17 Total: 15.21 kcal Atomic # 16 Polarization: 46.61 SS G_CDS: -0.62 Total: 45.99 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.34 -9.78 -40.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586774195.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.161 kcal (2) G-P(sol) polarization free energy of solvation -30.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds