Wall clock time and date at job start Tue Mar 31 2020 23:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.57682 * 2 1 4 4 C 1.53110 * 109.59682 * 239.88967 * 2 1 3 5 5 O 1.42902 * 109.48826 * 182.58159 * 4 2 1 6 6 C 1.42898 * 114.09974 * 61.10266 * 5 4 2 7 7 C 1.53085 * 109.41776 * 298.84479 * 6 5 4 8 8 C 1.53172 * 109.52379 * 120.16354 * 2 1 3 9 9 H 1.09003 * 109.54866 * 56.93127 * 8 2 1 10 10 C 1.52997 * 109.54462 * 296.74951 * 8 2 1 11 11 N 1.46498 * 109.47154 * 175.17875 * 10 8 2 12 12 S 1.65605 * 120.00101 * 165.00471 * 11 10 8 13 13 O 1.42100 * 106.39770 * 311.45361 * 12 11 10 14 14 O 1.42097 * 106.40214 * 178.54083 * 12 11 10 15 15 C 1.76196 * 107.21832 * 64.99679 * 12 11 10 16 16 C 1.38655 * 119.87552 * 90.00249 * 15 12 11 17 17 C 1.38618 * 120.49863 * 179.97438 * 16 15 12 18 18 C 1.37636 * 120.25095 * 0.02562 * 17 16 15 19 19 C 1.40705 * 119.74340 * 0.02562 * 18 17 16 20 20 C 1.41389 * 120.24258 * 179.97438 * 19 18 17 21 21 H 1.08000 * 120.00285 * 150.24130 * 20 19 18 22 22 C 1.39944 * 120.00470 * 330.24858 * 20 19 18 23 23 N 1.30817 * 120.00398 * 161.71131 * 22 20 19 24 24 Si 1.86806 * 119.99583 * 341.71163 * 22 20 19 25 25 H 1.48503 * 109.47327 * 95.41390 * 24 22 20 26 26 H 1.48502 * 109.46913 * 215.41554 * 24 22 20 27 27 H 1.48499 * 109.47052 * 335.41088 * 24 22 20 28 28 C 1.37599 * 119.87223 * 269.72244 * 15 12 11 29 29 H 1.09006 * 109.46899 * 299.83977 * 1 2 3 30 30 H 1.09002 * 109.47238 * 59.83530 * 1 2 3 31 31 H 1.08999 * 109.47362 * 179.83870 * 1 2 3 32 32 H 1.08993 * 109.48103 * 62.54445 * 4 2 1 33 33 H 1.09003 * 109.41304 * 302.56213 * 4 2 1 34 34 H 1.09005 * 109.47746 * 178.85633 * 6 5 4 35 35 H 1.09001 * 109.47820 * 58.83448 * 6 5 4 36 36 H 1.08994 * 109.52511 * 297.70004 * 7 6 5 37 37 H 1.09007 * 109.52042 * 177.51378 * 7 6 5 38 38 H 1.08999 * 109.47160 * 55.17990 * 10 8 2 39 39 H 1.09000 * 109.46926 * 295.17749 * 10 8 2 40 40 H 0.97004 * 120.00580 * 344.99585 * 11 10 8 41 41 H 1.07997 * 119.74879 * 359.97438 * 16 15 12 42 42 H 1.08001 * 119.87370 * 180.02562 * 17 16 15 43 43 H 1.07994 * 120.12903 * 180.02562 * 18 17 16 44 44 H 0.97005 * 120.00100 * 179.97438 * 23 22 20 45 45 H 1.07994 * 120.13333 * 0.02562 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0435 -0.7236 -1.2478 5 8 3.4712 -0.7750 -1.2154 6 6 4.0043 -1.4835 -0.0948 7 6 3.5716 -0.7892 1.1991 8 6 2.0419 -0.7254 1.2482 9 1 1.6355 -1.7365 1.2748 10 6 1.6013 0.0364 2.4997 11 7 1.9917 -0.7179 3.6933 12 16 1.9842 0.0177 5.1770 13 8 2.6735 1.2500 5.0173 14 8 2.3724 -0.9735 6.1183 15 6 0.3111 0.4277 5.5474 16 6 -0.4895 -0.4812 6.2222 17 6 -1.8074 -0.1718 6.5207 18 6 -2.3357 1.0434 6.1488 19 6 -1.5328 1.9731 5.4626 20 6 -2.0648 3.2244 5.0751 21 1 -1.4190 4.0871 5.0035 22 6 -3.4284 3.3453 4.7844 23 7 -3.9938 4.5250 4.7778 24 14 -4.4413 1.8220 4.4059 25 1 -5.1178 1.3572 5.6435 26 1 -5.4612 2.1488 3.3772 27 1 -3.5501 0.7492 3.8960 28 6 -0.1942 1.6509 5.1709 29 1 -0.3633 0.5114 0.8915 30 1 -0.3634 0.5164 -0.8885 31 1 -0.3634 -1.0276 -0.0029 32 1 1.7191 -0.1863 -2.1389 33 1 1.6437 -1.7375 -1.2689 34 1 5.0927 -1.4937 -0.1555 35 1 3.6303 -2.5073 -0.1007 36 1 3.9793 0.2213 1.2242 37 1 3.9403 -1.3531 2.0560 38 1 0.5185 0.1611 2.4868 39 1 2.0797 1.0157 2.5162 40 1 2.2546 -1.6484 3.6147 41 1 -0.0834 -1.4373 6.5175 42 1 -2.4219 -0.8872 7.0471 43 1 -3.3626 1.2826 6.3827 44 1 -4.9389 4.6088 4.5759 45 1 0.4324 2.3590 4.6491 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586774196.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:47 Heat of formation + Delta-G solvation = -121.953602 kcal Electronic energy + Delta-G solvation = -28064.001147 eV Core-core repulsion = 24172.263176 eV Total energy + Delta-G solvation = -3891.737971 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.91995 -37.96970 -36.84525 -36.31015 -35.42928 -33.83890 -33.75186 -31.92661 -30.77234 -30.21709 -27.42047 -26.69897 -25.43108 -22.91238 -22.45193 -22.37880 -20.96941 -20.28911 -19.16656 -18.07640 -17.18217 -16.54010 -16.36901 -16.10296 -15.79684 -15.53440 -15.14065 -14.90745 -14.71204 -14.57463 -14.00817 -13.75779 -13.57554 -13.22893 -12.93501 -12.82545 -12.46102 -12.28497 -12.17815 -12.11265 -11.90980 -11.78897 -11.68794 -11.61552 -11.50693 -11.26487 -11.09367 -11.04734 -10.88448 -10.67425 -10.42794 -10.35354 -10.06565 -9.83105 -9.68759 -9.44254 -9.15044 -8.32827 -7.93080 -7.13552 -4.69095 0.87462 1.85554 2.36633 2.94050 3.05161 3.12065 3.41087 3.67908 3.78710 4.06136 4.26046 4.43854 4.48909 4.50427 4.70554 4.87999 4.99672 5.09979 5.13295 5.21476 5.28917 5.32935 5.40790 5.47220 5.56111 5.62156 5.68092 5.77045 5.78690 5.89552 5.95069 5.96977 6.03754 6.15318 6.16443 6.26733 6.40688 6.53281 6.81556 6.98303 6.99319 7.11728 7.14772 7.34648 7.57166 7.72772 8.13933 8.37786 8.56523 9.88320 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011177 B = 0.004129 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.540955 B = 6779.392524 C = 8400.535796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 H 0.085 0.915 4 C 0.067 3.933 5 O -0.384 6.384 6 C 0.061 3.939 7 C -0.154 4.154 8 C -0.089 4.089 9 H 0.079 0.921 10 C 0.120 3.880 11 N -1.120 6.120 12 S 2.690 3.310 13 O -0.967 6.967 14 O -0.974 6.974 15 C -0.625 4.625 16 C -0.157 4.157 17 C -0.092 4.092 18 C -0.198 4.198 19 C 0.074 3.926 20 C -0.443 4.443 21 H 0.096 0.904 22 C 0.084 3.916 23 N -0.799 5.799 24 Si 0.907 3.093 25 H -0.269 1.269 26 H -0.287 1.287 27 H -0.244 1.244 28 C -0.106 4.106 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.049 0.951 34 H 0.093 0.907 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.412 0.588 41 H 0.111 0.889 42 H 0.103 0.897 43 H 0.106 0.894 44 H 0.288 0.712 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.396 -11.369 -10.294 17.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.141 4.141 3 H 0.104 0.896 4 C -0.010 4.010 5 O -0.303 6.303 6 C -0.016 4.016 7 C -0.192 4.192 8 C -0.109 4.109 9 H 0.097 0.903 10 C -0.006 4.006 11 N -0.878 5.878 12 S 2.785 3.215 13 O -0.957 6.957 14 O -0.964 6.964 15 C -0.716 4.716 16 C -0.178 4.178 17 C -0.111 4.111 18 C -0.217 4.217 19 C 0.070 3.930 20 C -0.471 4.471 21 H 0.114 0.886 22 C -0.136 4.136 23 N -0.422 5.422 24 Si 0.733 3.267 25 H -0.195 1.195 26 H -0.214 1.214 27 H -0.167 1.167 28 C -0.127 4.127 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.112 0.888 33 H 0.068 0.932 34 H 0.111 0.889 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.246 0.754 41 H 0.129 0.871 42 H 0.121 0.879 43 H 0.124 0.876 44 H 0.098 0.902 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.023 -10.688 -9.952 16.663 hybrid contribution -1.618 -0.955 0.071 1.880 sum 6.405 -11.643 -9.882 16.560 Atomic orbital electron populations 1.21871 0.93928 1.02290 1.03037 1.21789 0.96741 1.01046 0.94558 0.89626 1.22650 0.80848 0.99581 0.97876 1.87929 1.20460 1.76400 1.45483 1.22590 0.99029 0.94413 0.85576 1.22294 0.95659 1.02879 0.98334 1.21427 0.95604 0.99986 0.93906 0.90286 1.21427 1.00680 0.95188 0.83353 1.55541 1.84962 1.24032 1.23290 1.01685 0.74864 0.73109 0.71866 1.93545 1.71864 1.44770 1.85534 1.93531 1.82728 1.60495 1.59662 1.29958 1.22860 1.04169 1.14571 1.20051 0.94372 0.98403 1.04927 1.20709 0.94964 0.96271 0.99196 1.21300 0.99925 0.96341 1.04179 1.17788 0.91771 0.92742 0.90701 1.19535 0.93746 0.94976 1.38865 0.88605 1.26164 0.97937 0.97590 0.91926 1.69681 1.13559 1.25425 1.33503 0.86364 0.79269 0.82268 0.78761 1.19456 1.21368 1.16739 1.20881 0.96799 0.93872 1.01145 0.91100 0.92218 0.92502 0.88804 0.93250 0.88930 0.93321 0.90402 0.90498 0.90649 0.89988 0.75438 0.87093 0.87910 0.87624 0.90154 0.86259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 8.93 37.16 0.33 -1.12 16 2 C -0.12 -1.15 2.42 -90.48 -0.22 -1.37 16 3 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 4 C 0.07 0.59 6.13 37.21 0.23 0.82 16 5 O -0.38 -4.05 10.77 -35.23 -0.38 -4.43 16 6 C 0.06 0.52 6.84 37.20 0.25 0.78 16 7 C -0.15 -1.43 5.27 -26.59 -0.14 -1.57 16 8 C -0.09 -0.87 1.79 -90.44 -0.16 -1.03 16 9 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 10 C 0.12 1.46 5.46 -4.04 -0.02 1.44 16 11 N -1.12 -14.37 5.58 -10.62 -0.06 -14.43 16 12 S 2.69 46.59 5.73 -107.50 -0.62 45.98 16 13 O -0.97 -19.13 16.73 -57.17 -0.96 -20.09 16 14 O -0.97 -18.53 17.27 -57.17 -0.99 -19.52 16 15 C -0.62 -12.58 5.94 -39.66 -0.24 -12.82 16 16 C -0.16 -3.14 9.53 -39.29 -0.37 -3.51 16 17 C -0.09 -1.89 10.02 -39.66 -0.40 -2.29 16 18 C -0.20 -4.51 7.18 -38.87 -0.28 -4.79 16 19 C 0.07 1.78 5.11 -106.82 -0.55 1.24 16 20 C -0.44 -11.35 9.57 -37.75 -0.36 -11.71 16 21 H 0.10 2.57 8.06 -52.49 -0.42 2.15 16 22 C 0.08 2.07 5.40 -17.35 -0.09 1.98 16 23 N -0.80 -20.19 13.93 55.55 0.77 -19.42 16 24 Si 0.91 19.29 24.52 -169.99 -4.17 15.12 16 25 H -0.27 -5.56 6.71 56.52 0.38 -5.18 16 26 H -0.29 -5.87 7.11 56.52 0.40 -5.47 16 27 H -0.24 -5.23 6.86 56.52 0.39 -4.84 16 28 C -0.11 -2.35 9.26 -38.87 -0.36 -2.71 16 29 H 0.07 0.77 6.43 -51.93 -0.33 0.43 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.65 7.65 -51.92 -0.40 0.26 16 38 H 0.08 0.96 6.30 -51.93 -0.33 0.63 16 39 H 0.08 1.06 7.75 -51.93 -0.40 0.66 16 40 H 0.41 4.19 8.40 -34.47 -0.29 3.90 16 41 H 0.11 1.99 7.60 -52.49 -0.40 1.59 16 42 H 0.10 1.80 8.06 -52.49 -0.42 1.37 16 43 H 0.11 2.37 4.73 -52.49 -0.25 2.12 16 44 H 0.29 6.56 8.30 -40.82 -0.34 6.22 16 45 H 0.12 2.53 7.60 -52.49 -0.40 2.13 16 LS Contribution 368.20 15.07 5.55 5.55 Total: -1.00 -30.33 368.20 -9.84 -40.16 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -6.62 Total: 7.72 kcal Atomic # 6 Polarization: -34.27 SS G_CDS: -2.37 Total: -36.65 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 0.71 Total: -33.85 kcal Atomic # 8 Polarization: -41.72 SS G_CDS: -2.32 Total: -44.04 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.17 Total: 15.12 kcal Atomic # 16 Polarization: 46.59 SS G_CDS: -0.62 Total: 45.98 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.33 -9.84 -40.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586774196.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.791 kcal (2) G-P(sol) polarization free energy of solvation -30.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds